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Influences of space, soil, nematodes and plants on microbial community composition of chalk grassland soils

Yergeau, E., Bezemer, T. M., Hedlund, K., Mortimer, S. R., Kowalchuk, G. A. and van der Putten, W. H. (2010) Influences of space, soil, nematodes and plants on microbial community composition of chalk grassland soils. Environmental Microbiology, 12 (8). pp. 2096-2106. ISSN 1462-2912

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To link to this article DOI: 10.1111/j.1462-2920.2009.02053.x

Abstract/Summary

Microbial communities respond to a variety of environmental factors related to resources (e.g. plant and soil organic matter), habitat (e.g. soil characteristics) and predation (e.g. nematodes, protozoa and viruses). However, the relative contribution of these factors on microbial community composition is poorly understood. Here, we sampled soils from 30 chalk grassland fields located in three different chalk hill ridges of Southern England, using a spatially explicit sampling scheme. We assessed microbial communities via phospholipid fatty acid (PLFA) analyses and PCR-denaturing gradient gel electrophoresis (DGGE) and measured soil characteristics, as well as nematode and plant community composition. The relative influences of space, soil, vegetation and nematodes on soil microorganisms were contrasted using variation partitioning and path analysis. Results indicate that soil characteristics and plant community composition, representing habitat and resources, shape soil microbial community composition, whereas the influence of nematodes, a potential predation factor, appears to be relatively small. Spatial variation in microbial community structure was detected at broad (between fields) and fine (within fields) scales, suggesting that microbial communities exhibit biogeographic patterns at different scales. Although our analysis included several relevant explanatory data sets, a large part of the variation in microbial communities remained unexplained (up to 92% in some analyses). However, in several analyses, significant parts of the variation in microbial community structure could be explained. The results of this study contribute to our understanding of the relative importance of different environmental and spatial factors in driving the composition of soil-borne microbial communities.

Item Type:Article
Refereed:Yes
Divisions:Faculty of Life Sciences > School of Agriculture, Policy and Development > Biodiversity, Crops and Agroecosystems Division > Centre for Agri-environmental Research (CAER)
Interdisciplinary centres and themes > Soil Research Centre
ID Code:4633
Uncontrolled Keywords:microbial communities, chalk grasslands, soil nematodes, spatial patterns, 19 variation partitioning, biogeography
Publisher:Wiley-Blackwell

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