Number of items: 50.
Article
Campoy, A. N. ORCID: https://orcid.org/0000-0002-6434-4326, Rivadeneira, M. M., Hernández, C. E. ORCID: https://orcid.org/0000-0002-9811-2881, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355
(2023)
Deep-sea origin and depth colonization associated with phenotypic innovations in scleractinian corals.
Nature Communications, 14.
7458.
ISSN 2041-1723
doi: https://doi.org/10.1038/s41467-023-43287-y
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865, O’Donovan, C. ORCID: https://orcid.org/0000-0003-4770-4227 and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2022)
General statistical model shows that macroevolutionary patterns and processes are consistent with Darwinian gradualism.
Nature Communications, 13 (1).
1113.
ISSN 2041-1723
doi: https://doi.org/10.1038/s41467-022-28595-z
Johnston, A. S. A. ORCID: https://orcid.org/0000-0001-8781-4039, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Ardö, J. ORCID: https://orcid.org/0000-0002-9318-0973, Arriga, N. ORCID: https://orcid.org/0000-0001-5321-3497, Black, A., Blanken, P. D. ORCID: https://orcid.org/0000-0002-7405-2220, Bonal, D. ORCID: https://orcid.org/0000-0001-9602-8603, Brümmer, C. ORCID: https://orcid.org/0000-0001-6621-5010, Cescatti, A., Dušek, J. ORCID: https://orcid.org/0000-0001-6119-0838, Graf, A. ORCID: https://orcid.org/0000-0003-4870-7622, Gioli, B. ORCID: https://orcid.org/0000-0001-7631-2623, Goded, I. ORCID: https://orcid.org/0000-0002-1912-325X, Gough, C. M. ORCID: https://orcid.org/0000-0002-1227-7731, Ikawa, H., Jassal, R. ORCID: https://orcid.org/0000-0002-6727-5215, Kobayashi, H. ORCID: https://orcid.org/0000-0001-9319-0621, Magliulo, V. ORCID: https://orcid.org/0000-0001-5505-6552, Manca, G. ORCID: https://orcid.org/0000-0002-9376-0310, Montagnani, L. ORCID: https://orcid.org/0000-0003-2957-9071, Moyano, F. E. ORCID: https://orcid.org/0000-0002-4090-5838, Olesen, J. E. ORCID: https://orcid.org/0000-0002-6639-1273, Sachs, T. ORCID: https://orcid.org/0000-0002-9959-4771, Shao, C., Tagesson, T. ORCID: https://orcid.org/0000-0003-3011-1775, Wohlfahrt, G. ORCID: https://orcid.org/0000-0003-3080-6702, Wolf, S. ORCID: https://orcid.org/0000-0001-7717-6993, Woodgate, W., Varlagin, A. ORCID: https://orcid.org/0000-0002-2549-5236 and Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355
(2021)
Temperature thresholds of ecosystem respiration at a global scale.
Nature Ecology & Evolution, 5.
pp. 487-494.
ISSN 2397-334X
doi: https://doi.org/10.1038/s41559-021-01398-z
Baker, J. ORCID: https://orcid.org/0000-0003-4904-6934, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355
(2021)
Nothing wrong with the analysis of clades in comparative evolutionary studies.
Systematic Biology, 70 (1).
pp. 197-201.
ISSN 1063-5157
doi: https://doi.org/10.1093/sysbio/syaa067
Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355, Baker, J. ORCID: https://orcid.org/0000-0003-4904-6934, Benton, M. J. ORCID: https://orcid.org/0000-0002-4323-1824, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Humphries, S. ORCID: https://orcid.org/0000-0001-9766-6404
(2020)
150 million years of sustained increase in pterosaur flight efficiency.
Nature, 587.
pp. 83-86.
ISSN 0028-0836
doi: https://doi.org/10.1038/s41586-020-2858-8
Wang, S. ORCID: https://orcid.org/0000-0002-7220-7305, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Lam, H.-M. and Luo, H. ORCID: https://orcid.org/0000-0001-8452-6066
(2020)
Evolutionary timeline and genomic plasticity underlying the lifestyle diversity in rhizobiales.
mSystems, 5 (4).
00438-20.
ISSN 2379-5077
doi: https://doi.org/10.1128/mSystems.00438-20
Baker, J. ORCID: https://orcid.org/0000-0003-4904-6934, Humphries, S., Ferguson-Gow, H., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355
(2020)
Rapid decreases in relative testes mass among monogamous birds but not in other vertebrates.
Ecology Letters, 23 (2).
pp. 283-292.
ISSN 1461-0248
doi: https://doi.org/10.1111/ele.13431
Campoy, A. N., Addamo, A. M., Machordom, A., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Rivadeneira, M. M., Hernández, C. E. and Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355
(2020)
The origin and correlated evolution of symbiosis and coloniality in Scleractinian corals.
Frontiers in Marine Science, 7.
p. 461.
ISSN 2296-7745
doi: https://doi.org/10.3389/fmars.2020.00461
Yu, H. Y., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Liu, S. J.
(2019)
Phylogeny of Clostridium spp. based on conservative genes and comparisons with other trees.
Microbiology, 88 (4).
pp. 469-478.
ISSN 1608-3237
doi: https://doi.org/10.1134/S002626171904012X
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865, Beaumont, M. A., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Verkerk, A. and Calude, A.
(2019)
Dominant words rise to the top by positive frequency-dependent selection.
Proceedings of the National Academy of Sciences of the United States of America, 116 (15).
pp. 7397-7402.
ISSN 1091-6490
doi: https://doi.org/10.1073/pnas.1816994116
Kubo, T., Sakamoto, M., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355
(2019)
Transitions between foot postures are associated with elevated rates of body size evolution in mammals.
Proceedings of the National Academy of Sciences of the United States of America, 116 (7).
pp. 2618-2623.
ISSN 0027-8424
doi: https://doi.org/10.1073/pnas.1814329116
Gougoulias, C., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Shaw, L.
(2018)
Apportioning bacterial carbon source utilization in soil using 14C isotope analysis of FISH-targeted bacterial populations sorted by Fluorescence Activated Cell Sorting (FACS): 14C-FISH-FACS.
Environmental Microbiology Reports, 10 (3).
pp. 245-254.
ISSN 1758-2229
doi: https://doi.org/10.1111/1758-2229.12631
O’Donovan, C., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355
(2018)
Dinosaurs reveal the geographical signature of an evolutionary radiation.
Nature Ecology & Evolution, 2 (3).
pp. 452-458.
ISSN 2397-334X
doi: https://doi.org/10.1038/s41559-017-0454-6
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2018)
The deep history of the number words.
Philosophical Transactions of the Royal Society B-Biological Sciences, 373 (1740).
0517.
ISSN 0962-8436
doi: https://doi.org/10.1098/rstb.2016.0517
Tobias, J. A., Sheard, C., Seddon, N., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Cotton, A. J. and Nakagawa, S.
(2016)
Territoriality, social bonds, and the evolution of communal signaling in birds.
Frontiers in ecology and evolution, 4.
74.
ISSN 2296-701X
doi: https://doi.org/10.3389/fevo.2016.00074
Baker, J. ORCID: https://orcid.org/0000-0003-4904-6934, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355
(2016)
Positive phenotypic selection inferred from phylogenies.
Biological Journal of the Linnean Society, 118 (1).
pp. 95-115.
ISSN 0024-4066
doi: https://doi.org/10.1111/bij.12649
Cooper, N., Thomas, G. H., Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Freckleton, R. P.
(2016)
A cautionary note on the use of Ornstein Uhlenbeck models in macroevolutionary studies.
Biological Journal of the Linnean Society, 118 (1).
pp. 64-77.
ISSN 0024-4066
doi: https://doi.org/10.1111/bij.12701
Grollemund, R., Branford, S., Bostoen, K., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2015)
Bantu expansion shows that habitat alters the route and pace of human dispersals.
Proceedings of the National Academy of Sciences of the United States of America, 112 (43).
pp. 13296-13301.
ISSN 0027-8424
doi: https://doi.org/10.1073/pnas.1503793112
Baker, J. ORCID: https://orcid.org/0000-0003-4904-6934, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355
(2015)
Adaptive evolution toward larger size in mammals.
Proceedings of the National Academy of Sciences of the United States of America, 112 (16).
pp. 5093-5098.
ISSN 0027-8424
doi: https://doi.org/10.1073/pnas.1419823112
Hruschka, D. J., Branford, S., Smith, E. D., Wilkins, J., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Bhattacharya, T.
(2015)
Detecting regular sound changes in linguistics as events of concerted evolution.
Current Biology, 25 (1).
pp. 1-9.
ISSN 0960-9822
doi: https://doi.org/10.1016/j.cub.2014.10.064
Currie, T. E., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Guillon, M. and Mace, R.
(2013)
Cultural phylogeography of the Bantu Languages of sub-Saharan Africa.
Proceedings of the Royal Society B-Biological Sciences, 280 (1762).
20130695.
ISSN 1471-2954
doi: https://doi.org/10.1098/rspb.2013.0695
Altschuler, E. L., Calude, A., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2013)
Linguistic evidence supports date for Homeric epics.
Bioessays, 35 (5).
pp. 417-420.
ISSN 0265-9247
doi: https://doi.org/10.1002/bies.201200165
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865, Atkinson, Q. D., Calude, A. and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2013)
Ultraconserved words point to deep language ancestry across Eurasia.
Proceedings of the National Academy of Sciences of the United States of America, 110 (21).
pp. 8471-8476.
ISSN 0027-8424
doi: https://doi.org/10.1073/pnas.1218726110
Hernández, C. E., Rodríguez-Serrano, E., Avaria-Llautureo, J., Inostroza-Michael, O., Morales-Pallero, B., Boric-Bargetto, D., Canales-Aguirre, C. B., Marquet, P. A. and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2013)
Using phylogenetic information and the comparative method to evaluate hypotheses in macroecology.
Methods in Ecology and Evolution, 4 (5).
pp. 401-415.
ISSN 2041-210X
doi: https://doi.org/10.1111/2041-210X.12033
Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2011)
Multiple routes to mammalian diversity.
Nature, 479.
pp. 393-396.
ISSN 0028-0836
doi: https://doi.org/10.1038/nature10516
Greenhill, S. J., Atkinson, Q. D., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Gray, R. D.
(2010)
The shape and tempo of language evolution.
Proceedings of the Royal Society B-Biological Sciences, 277 (1693).
pp. 2443-2450.
ISSN 1471-2954
doi: https://doi.org/10.1098/rspb.2010.0051
Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2010)
Phylogenies reveal new interpretation of speciation and the Red Queen.
Nature, 463 (7379).
pp. 349-352.
ISSN 0028-0836
doi: https://doi.org/10.1038/nature08630
Organ, C. L., Janes, D. E., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2009)
Genotypic sex determination enabled adaptive radiations of extinct marine reptiles.
Nature, 461 (7262).
pp. 389-392.
ISSN 0028-0836
doi: https://doi.org/10.1038/nature08350
Atkinson, Q. D., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355, Greenhill, S. J. and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2008)
Languages evolve in punctuational bursts.
Science, 319 (5863).
p. 588.
ISSN 0036-8075
doi: https://doi.org/10.1126/science.1149683
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2008)
Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo.
Philosophical Transactions of the Royal Society B-Biological Sciences, 363 (1512).
pp. 3955-3964.
ISSN 0962-8436
doi: https://doi.org/10.1098/rstb.2008.0178
Atkinson, Q. D., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355, Greenhill, S. J. and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2008)
Parsing the evolution of language - Response.
Science, 320 (5875).
p. 446.
ISSN 0036-8075
Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2008)
Phylogenetic mixture models can reduce node-density artifacts.
Systematic Biology, 57 (2).
pp. 286-293.
ISSN 1063-5157
doi: https://doi.org/10.1080/10635150802044045
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Scott, D.
(2007)
Assembly rules for protein networks derived from phylogenetic-statistical analysis of whole genomes.
Bmc Evolutionary Biology, 7.
p. 11.
ISSN 1471-2148
doi: https://doi.org/10.1186/1471-2148-7-s1-s16
Barker, D., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2007)
Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes.
Bioinformatics, 23 (1).
pp. 14-20.
ISSN 1367-4803
doi: https://doi.org/10.1093/bioinformatics/btl558
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865, Atkinson, Q. D. and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2007)
Frequency of word-use predicts rates of lexical evolution throughout Indo-European history.
Nature, 449 (7163).
717-U7.
ISSN 0028-0836
doi: https://doi.org/10.1038/nature06176
Organ, C. L., Shedlock, A. M., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Edwards, S. V.
(2007)
Origin of avian genome size and structure in non-avian dinosaurs.
Nature, 446 (7132).
pp. 180-184.
ISSN 0028-0836
doi: https://doi.org/10.1038/nature05621
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2006)
Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo.
American Naturalist, 167 (6).
pp. 808-825.
ISSN 0003-0147
doi: https://doi.org/10.1086/503444
Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2006)
Detecting the node-density artifact in phylogeny reconstruction.
Systematic Biology, 55 (4).
pp. 637-643.
ISSN 1063-5157
doi: https://doi.org/10.1080/10635150600865567
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865, Venditti, C. ORCID: https://orcid.org/0000-0002-6776-2355 and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2006)
Large punctuational contribution of speciation to evolutionary divergence at the molecular level.
Science, 314 (5796).
pp. 119-121.
ISSN 0036-8075
doi: https://doi.org/10.1126/science.1129647
Lester, L., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2006)
The slow road to the eukaryotic genome.
Bioessays, 28 (1).
pp. 57-64.
ISSN 0265-9247
doi: https://doi.org/10.1002/bies.20344
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Barker, D.
(2004)
Bayesian estimation of ancestral character states on phylogenies.
Systematic Biology, 53 (5).
pp. 673-684.
ISSN 1063-5157
doi: https://doi.org/10.1080/10635150490522232
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2004)
A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data.
Systematic Biology, 53 (4).
pp. 571-581.
ISSN 1063-5157
doi: https://doi.org/10.1080/10635150490468675
Sibly, R. M. ORCID: https://orcid.org/0000-0001-6828-3543, Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Boxall, N., Wilkinson, M. J., Corne, D. W. and Whittaker, J. C.
(2003)
The structure of interrupted human AC microsatellites.
Molecular Biology and Evolution, 20 (3).
pp. 453-459.
ISSN 0737-4038
doi: https://doi.org/10.1093/molbev/msg056
Book or Report Section
Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2022)
Ancestral state reconstruction using Bayes traits.
In: Luo, H. (ed.)
Environmental Microbial Evolution: Methods and Protocols.
Methods in Molecular Biology.
Humana, New York, pp. 255-266, XI, 362.
ISBN 9781071626900
doi: https://doi.org/10.1007/978-1-0716-2691-7_12
Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865
(2008)
A phylogenetic mixture model for heterotachy.
In: Pontarotti, P. (ed.)
Evolutionary Biology from Concept to Application.
Springer Verlag, Heidelberg, pp. 29-41.
ISBN 9783642009518
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2006)
Estimating rates of lexical replacement on phylogenetic trees of languages.
In: Forster, P. and Renfrew, C. (eds.)
Phylogenetic methods and the prehistory of languages.
McDonald institute Monographs, pp. 173-182.
ISBN 9781902937335
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2005)
Bayesian estimation of correlated evolution across cultures: a case study of marriage systems and wealth transfer at marriage.
In: Mace, R., Holden, C.J. and Shennan, S. (eds.)
The Evolution of Cultural Diversity: a phylogenetic approach.
University College London Press, London, pp. 235-256.
ISBN 9781844720651
Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865 and Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711
(2005)
Mixture models in phylogenetic inference.
In: Gascuel, O. (ed.)
Mathematics of Evolution and Phylogeny.
Oxford University Press, pp. 121-142.
ISBN 9780198566106
Conference or Workshop Item
Manjunathaiah, M., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Thavarajan, R., Protopapas, P. and Dave, R.
(2019)
Big data scalability of bayesPhylogenies on Harvard’s ozone 12k cores.
In: The 12th International Joint Conference on Biomedical Engineering Systems and Technologies, 22-24 Feb 2019, Prague, Czech Republic, pp. 143-148.
Johnson, D., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Alexandrov, V. N.
(2009)
A lightweight supercomputing web portal for inferring phylogenetic trees.
In: 5th IEEE International Conference on e-Science Workshops, 2009, Oxford, UK.
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