Koutsos, A., Griffin, B. A., Antoni, R., Ozen, E. ORCID: https://orcid.org/0000-0001-6203-7018, Sellem, L., Wong, G., Ayyad, H., Fielding, B. A., Robertson, M. D., Swann, J., Jackson, K. G. ORCID: https://orcid.org/0000-0002-0070-3203 and Lovegrove, J. A. ORCID: https://orcid.org/0000-0001-7633-9455 (2024) Variation of LDL-cholesterol in response to the replacement of saturated with unsaturated fatty acids: a non-randomised, sequential dietary intervention study (RISSCI-1). American Journal of Clinical Nutrition. ISSN 1938-3207 doi: https://doi.org/10.1016/j.ajcnut.2024.07.032

Osman, A., Zuffa, S., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Fagbodun, E., Zanos, P., Georgiou, P., Kitchen, I., Swann, J. and Bailey, A. (2021) Post-weaning A1/A2 b-casein milk intake modulates depressive-like behavior, brain mopioid receptors, and the metabolome of rats. iScience, 24 (9). ISSN 2589-0042 doi: https://doi.org/10.1016/j.isci.2021.103048

Leng, J., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J., Darby, A., La Ragione, R. and Proudman, C. (2020) "Bowel-on-the-bench:" proof-of-concept of a three stage, in vitro, fermentation model of the equine large intestine. Applied and Environmental Microbiology, 86 (1). e02093-19. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.02093-19

Giallourou, N. S., Rowland, I. R., Rothwell, S. D., Packham, G., Commane, D. M. and Swann, J. R. (2019) Metabolic targets of watercress and PEITC in MCF-7 and MCF-10A cells explain differential sensitisation responses to ionising radiation. European Journal of Nutrition, 58 (6). pp. 2377-2391. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-018-1789-8

Brierley, D. I., Harman, J. R., Giallourou, N., Leishman, E., Roashan, A. E., Mellows, B. A. D., Bradshaw, H. B., Swann, J. R., Patel, K., Whalley, B. J. and Williams, C. M. ORCID: https://orcid.org/0000-0003-4452-671X (2019) Chemotherapy-induced cachexia dysregulates hypothalamic and systemic lipoamines and is attenuated by cannabigerol. Journal of Cachexia, Sarcopenia and Muscle, 10 (4). pp. 844-859. ISSN 2190-6009 doi: https://doi.org/10.1002/jcsm.12426

Sfyri, P. P., Yuldasheva, N. Y., Tzimou, A., Giallourou, N., Crispi, V., Aburima, A., Beltran-Alvarez, P., Patel, K., Mougios, V., Swann, J. R., Kearney, M. T. and Matsakas, A. (2018) Attenuation of oxidative stress-induced lesions in skeletal muscle in a mouse model of obesity-independent hyperlipidaemia and atherosclerosis through the inhibition of Nox2 activity. Free Radical Biology & Medicine, 129. pp. 504-519. ISSN 0891-5849 doi: https://doi.org/10.1016/j.freeradbiomed.2018.10.422

Grimaldi, R., Cela, D., Swann, J. R., Vulevic, J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Tzortzis, G. and Costabile, A. (2017) In vitro fermentation of B-GOS: impact on faecal bacterial populations and metabolic activity in autistic and non-autistic children. FEMS Microbiology Ecology, 93 (2). fiw233. ISSN 1574-6941 doi: https://doi.org/10.1093/femsec/fiw233

Farshim, P., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Chakrabarti, B. ORCID: https://orcid.org/0000-0002-6649-7895, Givens, I. ORCID: https://orcid.org/0000-0002-6754-6935, Saddy, D. ORCID: https://orcid.org/0000-0001-8501-6076, Kitchen, I., Swann, J. R. and Bailey, A. (2016) Maternal weaning modulates emotional behavior and regulates the gut-brain axis. Scientific Reports, 6. 21958. ISSN 2045-2322 doi: https://doi.org/10.1038/srep21958

Grimaldi, R., Swann, J. R., Vulevic, J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Costabile, A. (2016) Fermentation properties and potential prebiotic activity of Bimuno® galacto-oligosaccharide (65 % galacto-oligosaccharide content) on in vitro gut microbiota parameters. British Journal of Nutrition, 116 (3). pp. 480-486. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114516002269

Matsakas, A., Prosdocimo, D. A., Mitchell, R., Collins-Hooper, H., Giallourou, N., Swann, J. R., Potter, P., Epting, T., Jain, M. K. and Patel, K. (2015) Investigating mechanisms underpinning the detrimental impact of a high-fat diet in the developing and adult hypermuscular myostatin null mouse. Skeletal Muscle, 5. 38. ISSN 2044-5040 doi: https://doi.org/10.1186/s13395-015-0063-5

Escalona, E. E., Leng, J., Dona, A. C., Merrifield, C. A., Holmes, E., Proudman, C. J. and Swann, J. R. (2015) Dominant components of the Thoroughbred metabolome characterised by 1H‐NMR spectroscopy: a metabolite atlas of common biofluids. Equine Veterinary Journal, 47 (6). pp. 721-730. ISSN 2042-3306 doi: https://doi.org/10.1111/evj.12333

Blatchford, P., Stoklosinski, H., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Gearry, R. and Ansell, J. (2015) Kiwifruit fermentation drives positive gut microbial and metabolic changes irrespective of initial microbiota composition. Bioactive Carbohydrates and Dietary Fibre, 6 (1). pp. 37-45. ISSN 2212-6198 doi: https://doi.org/10.1016/j.bcdf.2015.07.001

Reid, G., Brigidi, P., Burton, J. P., Contractor, N., Duncan, S., Fargier, E., Hill, C., Lebeer, S., Martin, R., McBain, A. J., Mor, G., O'Neill, C., Rodriguez, J. M., Swann, J., Hemert, S. v. and Ansell, J. (2015) Microbes central to human reproduction. American Journal of Reproductive Immunology, 73 (1). pp. 1-11. ISSN 1600-0897 doi: https://doi.org/10.1111/aji.12319

Musaro, A., Collins-Hooper, H., Sartori, R., Giallourou, N., Matsakas, A., Mitchell, R., Mararenkova, H., Flasskamp, H., Macharia, R., Ray, S., Swann, J. R., Sandri, M. and Patel, K. (2015) Symmorphosis through dietary regulation: a combinatorial role for proteolysis, autophagy and protein synthesis in normalising muscle metabolism and function of hypertrophic mice after acute starvation. PLoS ONE, 10 (3). e0120524. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0120524

Frost, G. S., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J. R., Psichas, A., Costabile, A., Johnson, L. P., Sponheimer, M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Barraclough, T. G. (2014) Impacts of plant-based foods in ancestral hominin diets on the metabolism and function of gut microbiota in vitro. mBio, 5. e00853-14. ISSN 2150-7511 doi: https://doi.org/10.1128/mbio.00853-14

Frost, G., Sleeth, M. L., Sahuri-Arisoylu, M., Lizarbe, B., Cerdan, S., Brody, L., Anastasovska, J., Ghourab, S., Hankir, M., Zhang, S., Carling, D., Swann, J. R., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Viardot, A., Morrison, D., Thomas, E. L. and Bell, J. D. (2014) The short-chain fatty acid acetate reduces appetite via a central homeostatic mechanism. Nature Communications, 5 (3611). ISSN 2041-1723 doi: https://doi.org/10.1038/ncomms4611

Swann, J. R., Reid, G., Nduti, N., Sybesma, W., Kort, R., Kollmann, T. R., Adam, R., Boga, H., Brown, E. M., Einerhand, A., El-Nezami, H., Gloor, G. B., Kavere, I. I., Lindahl, J., Manges, A., Mamo, W., Martin, R., McMillan, A., Obiero, J., Ochieng, P. A., Onyango, A., Rulisa, S., Salminen, E., Salminen, S., Sije, A., van Treuren, W., Waweru, D. and Kemp, S. J. (2014) Harnessing microbiome and probiotic research in sub-Saharan Africa: recommendations from an African workshop. Microbiome, 2 (12). pp. 1-13. ISSN 2049-2618 doi: https://doi.org/10.1186/2049-2618-2-12

Kok, M. G.M., Swann, J. R., Wilson, I. D., Somsen, G. W. and de Jong, G. J. (2014) Hydrophilic interaction chromatography–mass spectrometry for anionic metabolic profiling of urine from antibiotic-treated rats. Journal of Pharmaceutical and Biomedical Analysis, 92. pp. 98-104. ISSN 0731-7085 doi: https://doi.org/10.1016/j.jpba.2014.01.008

Swann, J. R. and Claus, S. P. (2014) Nutrimetabonomics: nutritional applications of metabolic profiling. Science Progress, 97 (1). pp. 41-47. ISSN 0036-8504 doi: https://doi.org/10.3184/003685014X13898807933527

Gan, X. T., Ettinger, G., Huang, C. X., Burton, J. P., Haist, J. V., Rajapurohitam, V., Sidaway, J. E., Martin, G., Gloor, G. B., Swann, J. R., Reid, G. and Karmazyn, M. (2014) Probiotic administration attenuates myocardial hypertrophy and heart failure following myocardial infarction in the rat. Circulation : heart failure, 7 (3). pp. 491-499. ISSN 1941-3289 doi: https://doi.org/10.1161/​CIRCHEARTFAILURE.113.000978

Lees, H., Swann, J., Poucher, S. M., Nicholson, J. K., Holmes, E., Wilson, I. D. and Marchesi, J. R. (2014) Age and microenvironment outweigh genetic influence on the Zucker rat microbiome. PLoS ONE, 9 (9). e100916. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0100916

Bodinham, C. L., Smith, L., Thomas, E. L., Bell, J. D., Swann, J. R., Costabile, A., Russell-Jones, D., Umpleby, A. M. and Robertson, M. D. (2014) Efficacy of increased resistant starch consumption in human type 2 diabetes. Endocrine connections, 3 (2). pp. 75-84. ISSN 2049-3614 doi: https://doi.org/10.1530/EC-14-0036

Daud, N. M., Ismail, N. A., Thomas, E. L., Fitzpatrick, J. A., Bell, J. D., Swann, J. R., Costabile, A., Childs, C. E., Pedersen, C., Goldstone, A. P. and Frost, G. S. (2014) The impact of oligofructose on stimulation of gut hormones, appetite regulation, and adiposity. Obesity, 22 (6). pp. 1430-1438. ISSN 1930-739X doi: https://doi.org/10.1002/oby.20754

Claus, S. P. and Swann, J. R. (2013) Nutrimetabonomics: applications for nutritional sciences, with specific reference to gut microbial interactions. Annual Review of Food Science and Technology, 4. pp. 381-399. ISSN 1941-1413 doi: https://doi.org/10.1146/annurev-food-030212-182612

Kok, M. G. M., Ruijken, M. A., Swann, J. R., Wilson, I. D., Somsen, G. W. and de Jong, G. J. (2013) Anionic metabolic profiling of urine from antibiotic-treated rats by capillary electrophoresis–mass spectrometry. Analytical and Bioanalytical Chemistry, 405 (8). pp. 2585-2594. ISSN 1618-2650 doi: https://doi.org/10.1007/s00216-012-6701-4

Lees, H. J., Swann, J. R., Wilson, I. D., Nicholson, J. K. and Holmes, E. (2013) Hippurate: the natural history of a mammalian-microbial co-metabolite. Journal of Proteome Research, 12 (4). pp. 1527-1546. ISSN 1535-3907 doi: https://doi.org/10.1021/pr300900b

Swann, J. R., Spagou, K., Lewis, M., Nicholson, J. K., Glei, D. A., Seeman, T. E., Coe, C. L., Goldman, N., Ryff, C. D., Weinstein, M. and Holmes, E. (2013) Microbial−mammalian cometabolites dominate the age-associated urinary metabolic phenotype in Taiwanese and American populations. Journal of Proteome Research, 12 (7). pp. 3166-3180. ISSN 1535-3907 doi: https://doi.org/10.1021/pr4000152

Arora, T., Loo, R. L., Anastasovska, J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Tuohy, K. M., Sharma, R. K., Swann, J. R., Deaville, E. R., Sleeth, M. J., Thomas, E. L., Holmes, E., Bell, J. D. and Frost, G. (2012) Differential effects of two fermentable carbohydrates on central appetite regulation and body composition. PLoS ONE, 7. e43263. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0043263

Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J. E. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2012) Prebiotics for gut microbiota modulation through diet. In: Rosenberg, E., DeLong, E. F., Lory, S. and Stackebrandt, E. (eds.) The Prokaryotes: A Handbook on the Biology of Bacteria 4th Edition. Springer, pp. 25-43, Volume 5 (Human Microbiology). ISBN 9780387334882

Swann, J. R., Tuohy, K. M., Lindfors, P., Brown, D. T., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Wilson, I. D., Sidaway, J., Nicholson, J. K. and Holmes, E. (2011) Variation in antibiotic-induced microbial recolonization impacts on the host metabolic phenotypes of rats. Journal of Proteome Research, 10 (8). pp. 3590-3603. ISSN 1535-3907 doi: https://doi.org/10.1021/pr200243t

Swann, J. R., Want, E. J., Geier, F. M., Spagou, K., Wilson, I. D. , Sidaway, J. E., Nicholson, J. K. and Holmes, E. (2011) Systemic gut microbial modulation of bile acid metabolism in host tissue compartments. Proceedings of the National Academy of Sciences, 108 (Supplement). pp. 4523-4530. ISSN 1091-6490 doi: https://doi.org/10.1073/pnas.1006734107 (Microbes and Health Sackler Colloquium)

Saric, J., Li, J. V., Swann, J., Utzinger, J., Calvert, G., Nicholson, J. K., Dirnhofer, S., Dallman, M. J., Bictash, M. and Holmes, E. (2010) Integrated cytokine and metabolic analysis of pathological responses to parasite exposure in rodents. Journal of Proteome Research, 9 (5). pp. 2255-2264. ISSN 1535-3893 doi: https://doi.org/10.1021/pr901019z

Swann, J., Wang, Y., Abecia, L., Costabile, A., Tuohy, K., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Roberts, D., Sidaway, J., Jones, H., Wilson, I. D., Nicholson, J. and Holmes, E. (2009) Gut microbiome modulates the toxicity of hydrazine: a metabonomic study. Molecular Biosystems, 5. pp. 351-355. ISSN 1742-206X

Duarte, I. F., Legido-Quigley, C., Parker, D. A., Swann, J., Spraul, M., Braumann, U., Gil, A. M., Holmes, E., Nicholson, J. K., Murphy, G. M., Vilca-Melendez, H., Heaton, N. and Lindon, J. C. (2009) Identification of metabolites in human hepatic bile using 800 MHz 1H NMR spectroscopy, HPLC-NMR/MS and UPLC-MS. Molecular Biosystems, 5. pp. 180-190. ISSN 1742-206X doi: https://doi.org/10.1039/B814426E