Article

Oderberg, D. ORCID: https://orcid.org/0000-0001-9585-0515, Hill, J., Austin, C., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Cinotti, F. ORCID: https://orcid.org/0000-0003-2921-0901 and Gibbins, J. ORCID: https://orcid.org/0000-0002-0372-5352 (2024) Biological mistake theory and the question of function. Philosophy of Science. ISSN 1539-767X (In Press)

Zheng, Y. ORCID: https://orcid.org/0000-0001-7472-6427, Kang, S., O'Neill, J. and Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2024) Spontaneous slow wave oscillations in extracellular field potential recordings reflect the alternating dominance of excitation and inhibition. Journal of Physiology. ISSN 1469-7793 doi: https://doi.org/10.1113/JP284587

Oderberg, D. ORCID: https://orcid.org/0000-0001-9585-0515, Hill, J., Austin, C., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Cinotti, F. ORCID: https://orcid.org/0000-0003-2921-0901 and Gibbins, J. ORCID: https://orcid.org/0000-0002-0372-5352 (2023) Biological mistakes: what they are and what they mean for the experimental biologist. British Journal for the Philosophy of Science. ISSN 1464-3537 doi: https://doi.org/10.1086/724444 (In Press)

Hill, J., Oderberg, D. ORCID: https://orcid.org/0000-0001-9585-0515, Gibbins, J. ORCID: https://orcid.org/0000-0002-0372-5352 and Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2022) Mistake-making: a theoretical framework for generating research questions in biology, with illustrative application to blood clotting. Quarterly Review of Biology, 97 (1). ISSN 0033-5770 doi: https://doi.org/10.1086/718736

Ross, J., Margetts, M., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Nicks, R., Avitabile, D. and Coombes, S. (2020) A brain-wave equation incorporating axo-dendritic connectivity. Physical Review E, 101 (2). 022411. ISSN 2470-0045 doi: https://doi.org/10.1103/PhysRevE.101.022411

Alswaihli, J., Potthast, R. ORCID: https://orcid.org/0000-0001-6794-2500, Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Saddy, D. ORCID: https://orcid.org/0000-0001-8501-6076 and Hutt, A. (2018) Kernel reconstruction for delayed neural field equations. The Journal of Mathematical Neuroscience, 8. 3. ISSN 2190-8567 doi: https://doi.org/10.1186/s13408-018-0058-8

Staiger, J. F., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Miceli, S. and Schubert, D. (2015) A gradual depth-dependent change of connectivity features of supragranular pyramidal cells in rat barrel cortex. Brain Structure and Function, 220 (3). pp. 1317-1337. ISSN 1863-2661 doi: https://doi.org/10.1007/s00429-014-0726-8

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Stoyanov, Z. and Liley, D. (2015) Emergence of spatially heterogeneous burst suppression in a neural field model of electrocortical activity. Frontiers in Systems Neuroscience, 9. 18. ISSN 1662-5137 doi: https://doi.org/10.3389/fnsys.2015.00018

Dahlem, M. A., Schmidt, B., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Boie, S., Kneer, F., Hadjikhani, N. and Kurths, J. (2015) Cortical hot spots and labyrinths: why cortical neuromodulation for episodic migraine with aura should be personalized. Frontiers in Computational Neuroscience, 9. 29. ISSN 1662-5188 doi: https://doi.org/10.3389/fncom.2015.00029

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Day, H. C. and Liley, D. T. J. (2013) Ketamine, propofol, and the EEG: A neural field analysis of HCN1-mediated interactions. Frontiers in Computational Neuroscience, 7. Article 22. ISSN 1662-5188 doi: https://doi.org/10.3389/fncom.2013.00022

Trong, M. N., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Knösche, T. R. (2013) Associating spontaneous with evoked activity in a neural mass model of cat visual cortex. NeuroImage, 66. pp. 80-87. ISSN 1053-8119 doi: https://doi.org/10.1016/j.neuroimage.2012.10.024

Viriyopase, A., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Zeitler, M. and Gielen, S. (2012) When long-range zero-lag synchronization is feasible in cortical networks. Frontiers in Computational Neuroscience, 6. Article 49. ISSN 1662-5188 doi: https://doi.org/10.3389/fncom.2012.00049

Coombes, S., Schmidt, H. and Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2012) Interface dynamics in planar neural field models. The Journal of Mathematical Neuroscience, 2 (1). 9. ISSN 2190-8567 doi: https://doi.org/10.1186/2190-8567-2-9

Frascoli, F., van Veen, L., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Liley, D. T.J. (2011) Metabifurcation analysis of a mean field model of the cortex. Physica D: Nonlinear Phenomena, 240 (11). pp. 949-962. ISSN 0167-2789 doi: https://doi.org/10.1016/j.physd.2011.02.002

Scheeringa, R., Mazaheri, A., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Norris, D. G. N. and Kleinschmidt, A. (2011) Modulation of visually evoked cortical fMRI responses by phase of ongoing occipital alpha oscillations. Journal of Neuroscience, 31 (10). pp. 3813-3820. ISSN 1529-2401 doi: https://doi.org/10.1523/JNEUROSCI.4697-10.2011

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Oostendorp, T. F., Reid, A. T. and Kotter, R. (2011) Towards a model-based integration of co-registered electroencephalography/functional magnetic resonance imaging data with realistic neural population meshes. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 369 (1952). pp. 3785-3801. ISSN 1364-503X doi: https://doi.org/10.1098/rsta.2011.0080

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Liley, D. (2010) Axonal velocity distributions in neural feld equations. PLoS Computational Biology, 6 (1). pp. 1-25. ISSN 1553-734X doi: https://doi.org/10.1371/journal.pcbi.1000653

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Oostendorp, T. F., Reid, A. T. and Kotter, R. (2010) Connecting mean field models of neural activity to EEG and fMRI data. Brain Topography, 23 (2). pp. 139-149. ISSN 1573-6792 doi: https://doi.org/10.1007/s10548-010-0140-3

Bakker, R., Schubert, D., Levels, K., Bezgin, G., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Kötter, R. (2009) Classification of cortical microcircuits based on micro-electrode-array data from slices of rat barrel cortex. Neural Networks, 22 (8). pp. 1159-1168. ISSN 0893-6080 doi: https://doi.org/10.1016/j.neunet.2009.07.014

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Oostendorp, T. F., Reid, A. T. and Kötter, R. (2009) Realistic mean field forward predictions for the integration of co-registered EEG/fMRI. BMC Neuroscience, 10 (Suppl 1). L2. ISSN 1471-2202 doi: https://doi.org/10.1186/1471-2202-10-S1-L2

Foster, B. L., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Liley, D. T. J. (2008) Population based models of cortical drug response: insights from anaesthesia. Cognitive Neurodynamics, 2 (4). pp. 283-296. ISSN 1871-4099 doi: https://doi.org/10.1007/s11571-008-9063-z

Coombes, S., Venkov, N., Shiau, L., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Liley, D. and Laing, C. (2007) Modeling electrocortical activity through improved local approximations of integral neural field equations. Physical Review E, 76 (5). 051901. ISSN 1539-3755 doi: https://doi.org/10.1103/PhysRevE.76.051901

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Liley, D. T. J. (2007) Self-organized 40Hz synchronization in a physiological theory of EEG. Neurocomputing, 70 (10-12). pp. 2085-2090. ISSN 0925-2312 doi: https://doi.org/10.1016/j.neucom.2006.10.087

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Liley, D. (2005) Modeling the effects of anesthesia on the electroencephalogram. Physical Review E, 71 (4). 041902. ISSN 1539-3755 doi: https://doi.org/10.1103/PhysRevE.71.041902

Liley, D.T.J. and Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2005) Understanding the transition to seizure by modeling the epileptiform activity of general anesthetic agents. Journal of Clinical Neurophysiology, 22 (5). pp. 300-313. ISSN 1537-1603

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Liley, D.T.J., Cadusch, P.J. and Cheng, K. (2004) Electrorhythmogenesis and anaesthesia in a physiological mean field theory. Neurocomputing, 58-60. pp. 1197-1202. ISSN 0925-2312 doi: https://doi.org/10.1016/j.neucom.2004.01.185

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Stratmann, M. (2003) Next-to-leading order QCD corrections to the polarized hadroproduction of heavy flavors. Physical Review D, 67 (3). 034010. ISSN 1550-2368 doi: https://doi.org/10.1103/PhysRevD.67.034010

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2003) Polarized hadro- and photoproduction of heavy quarks in NLO QCD. International Journal of Modern Physics A, 18 (08). pp. 1477-1480. ISSN 0217-751X doi: https://doi.org/10.1142/S0217751X03014940

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Stratmann, M. (2000) Erratum to: “Photoproduction of heavy quarks in next-to-leading order QCD with longitudinally polarized initial states” [Nucl. Phys. B 540 (1999) 345]. Nuclear Physics B, 569 (1-3). p. 694. ISSN 0550-3213 doi: https://doi.org/10.1016/S0550-3213(99)00769-5

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Stratmann, M. (1999) Photoproduction of heavy quarks in next-to-leading order QCD with longitudinally polarized initial states. Nuclear Physics B, 540 (1-2). pp. 345-381. ISSN 0550-3213 doi: https://doi.org/10.1016/S0550-3213(98)00751-2

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (1999) Towards polarized hadroproduction of heavy quarks. Nuclear Physics B: Proceedings Supplements, 79 (1-3). pp. 599-601. ISSN 0920-5632 doi: https://doi.org/10.1016/S0920-5632(99)00794-X

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Stratmann, M. (1998) Next-to-leading order QCD corrections to the polarized photoproduction of heavy flavors. Physics Letters B, 433 (3-4). pp. 411-418. ISSN 0370-2693 doi: https://doi.org/10.1016/S0370-2693(98)00723-0

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Ernst, M. (1997) Limitations of small x resummation methods from F2data. Nuclear Physics B, 508 (3). pp. 731-752. ISSN 0550-3213 doi: https://doi.org/10.1016/S0550-3213(97)00656-1

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Ernst, M. (1997) Small x resummations confronted with F2(x, Q2) data. Physics Letters B, 397 (3-4). pp. 296-304. ISSN 0370-2693 doi: https://doi.org/10.1016/S0370-2693(97)00177-9

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Ernst, M. (1996) Balitskiǐ-Fadin-Kuraev-Lipatov equation versus data from DESY HERA. Physical Review D, 53 (1). pp. 80-88. ISSN 1550-2368 doi: https://doi.org/10.1103/PhysRevD.53.80

Book or Report Section

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Breakspear, M. (2014) Neuroimaging, neural population models for. In: Encyclopedia of Computational Neuroscience. Springer, pp. 1-29. ISBN 9781461473206 doi: https://doi.org/10.1007/978-1-4614-7320-6_70-1

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2014) Gamma rhythm, neural population models of the. In: Jaeger, D. and Jung, R. (eds.) Encyclopedia of Computational Neuroscience. Springer-Verlag Berlin Heidelberg, pp. 1-10. ISBN 9781461473206 doi: https://doi.org/10.1007/978-1-4614-7320-6_61-1

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2014) Neural population models and cortical field theory: overview. In: Encyclopedia of Computational Neuroscience. Springer, pp. 1-3. ISBN 9781461473206 doi: https://doi.org/10.1007/978-1-4614-7320-6_759-1

Liley, D. T. J., Foster, B. L. and Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2012) Co-operative populations of neurons: mean field models of mesoscopic brain activity. In: Le Nov`ere, N. (ed.) Computational Systems Neurobiology. Springer, Dordrecht, pp. 317-364. ISBN 9789400738577 doi: https://doi.org/10.1007/978-94-007-3858-4_11

Liley, D. T. J., Foster, B. L. and Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2011) A mesoscopic modelling approach to anaesthetic action on brain electrical activity. In: Hutt, A. (ed.) Sleep and Anesthesia: Neural Correlates in Theory and Experiment. Springer Series in Computational Neuroscience (15). Springer, New York, pp. 139-166. ISBN 9781461401728 doi: https://doi.org/10.1007/978-1-4614-0173-5_7

Liley, D.T.J., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Dafilis, M.P., van Veen, L., Frascoli, F. and Foster, B.L. (2009) Bifurcations and state changes in the human alpha rhythm: Theory and experiment. In: Steyn-Ross, A. D. and Steyn-Ross, M. (eds.) Modeling Phase Transitions in the Brain. Springer Series in Computational Neuroscience (4). Springer, New York, pp. 117-145. ISBN 9781441907950 doi: https://doi.org/10.1007/978-1-4419-0796-7_6

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Makdisi, Y.I. and Luccio, A.U. (2003) Polarized hadroproduction of open heavy quarks in NLO QCD at JHF and RHIC. In: Makdisi, Y.I., Luccio, A.U. and MacKay, W.W. (eds.) SPIN 2002: 15th international spin physics symposium and workshop on polarized electron sources and polarimeters. American Institute of Physics, New York, pp. 338-342. ISBN 0735401365 doi: https://doi.org/10.1063/1.1607155

Conference or Workshop Item

Maybank, P. ORCID: https://orcid.org/0000-0001-8427-2449, Peltzer, P., Naumann, U. and Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2020) MCMC for Bayesian uncertainty quantification from time-series data. In: International Conference on Computational Science 2020, 3-5 Jun 2020, Amsterdam, Netherlands, pp. 707-718. doi: https://doi.org/10.1007/978-3-030-50436-6_52

Foster, B. L., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Liley, D. T. J. (2011) Understanding the effects of anesthetic agents on the EEG through neural field theory. In: 33rd Annual International Conference of the IEEE EMBS, 30 Aug - 03 Sep 2011, Boston, Massachusetts, pp. 4709-4712.

Frascoli, F., Dafilis, M. P., van Veen, L., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Liley, D. T. J. (2008) Dynamical complexity in a mean-field model of human EEG. In: Biomedical Applications of Micro- and Nanoengineering IV and Complex Systems, 09 Dec 2008, Melbourne, Australia. doi: https://doi.org/10.1117/12.813966 (72700V)

Book

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Linster, C., eds. (2021) 30th Annual Computational Neuroscience Meeting: CNS*2021 – meeting abstracts. Springer, pp. 3-208. doi: https://doi.org/10.1007/s10827-021-00801-9 (Journal of Computational Neuroscience - Supplement Issue)

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Nowotny, T., eds. (2020) 29th Annual Computational Neuroscience Meeting: CNS*2020. Springer Nature. doi: https://doi.org/10.1186/s12868-020-00593-1 (BMC Neuroscience)

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Nowotny, T., eds. (2019) 28th Annual Computational Neuroscience Meeting: CNS*2019. BMC Neuroscience, pp190. doi: https://doi.org/10.1186/s12868-019-0538-0

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Nowotny, T., eds. (2018) 27th Annual Computational Neuroscience Meeting (CNS*2018): Part One. BMC Neuroscience, pp98. doi: https://doi.org/10.1186/s12868-018-0452-x

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Nowotny, T., eds. (2018) 27th Annual Computational Neuroscience Meeting (CNS*2018): Part Two. BMC Neuroscience, pp140. doi: https://doi.org/10.1186/s12868-018-0451-y

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Burkitt, A., eds. (2017) 26th annual computational neuroscience meeting (CNS*2017): part 1. BMC Neuroscience, pp14. doi: https://doi.org/10.1186/s12868-017-0370-3

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Burkitt, A., eds. (2017) 26th annual computational neuroscience meeting (CNS*2017): part 2. BMC Neuroscience, pp93. doi: https://doi.org/10.1186/s12868-017-0371-2

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Burkitt, A., eds. (2017) 26th annual computational neuroscience meeting (CNS*2017): part 3. BMC Neuroscience, pp176. doi: https://doi.org/10.1186/s12868-017-0372-1

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Burkitt, A., eds. (2016) 25th annual computational neuroscience meeting: CNS*2016. BMC Neuroscience, pp112. doi: https://doi.org/10.1186/s12868-016-0283-6

Thesis

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2000) NLO QCD Corrections to the Polarized Photo- and Hadroproduction of Heavy Quarks. PhD thesis, University of Dortmund.