Article

Oderberg, D. ORCID: https://orcid.org/0000-0001-9585-0515, Hill, J., Austin, C., Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502, Cinotti, F. and Gibbins, J. ORCID: https://orcid.org/0000-0002-0372-5352 (2022) Biological mistakes: what they are and what they mean for the experimental biologist. British Journal for the Philosophy of Science. ISSN 1464-3537 (In Press)

Hill, J., Oderberg, D. ORCID: https://orcid.org/0000-0001-9585-0515, Gibbins, J. ORCID: https://orcid.org/0000-0002-0372-5352 and Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2022) Mistake-making: a theoretical framework for generating research questions in biology, with illustrative application to blood clotting. Quarterly Review of Biology, 97 (1). ISSN 0033-5770 doi: https://doi.org/10.1086/718736

Ross, J., Margetts, M., Bojak, I., Nicks, R., Avitabile, D. and Coombes, S. (2020) A brain-wave equation incorporating axo-dendritic connectivity. Physical Review E, 101 (2). 022411. ISSN 2470-0045 doi: https://doi.org/10.1103/PhysRevE.101.022411

Alswaihli, J., Potthast, R., Bojak, I., Saddy, D. and Hutt, A. (2018) Kernel reconstruction for delayed neural field equations. The Journal of Mathematical Neuroscience, 8. 3. ISSN 2190-8567 doi: https://doi.org/10.1186/s13408-018-0058-8

Staiger, J. F., Bojak, I., Miceli, S. and Schubert, D. (2015) A gradual depth-dependent change of connectivity features of supragranular pyramidal cells in rat barrel cortex. Brain Structure and Function, 220 (3). pp. 1317-1337. ISSN 1863-2661 doi: https://doi.org/10.1007/s00429-014-0726-8

Bojak, I., Stoyanov, Z. and Liley, D. (2015) Emergence of spatially heterogeneous burst suppression in a neural field model of electrocortical activity. Frontiers in Systems Neuroscience, 9. 18. ISSN 1662-5137 doi: https://doi.org/10.3389/fnsys.2015.00018

Dahlem, M. A., Schmidt, B., Bojak, I., Boie, S., Kneer, F., Hadjikhani, N. and Kurths, J. (2015) Cortical hot spots and labyrinths: why cortical neuromodulation for episodic migraine with aura should be personalized. Frontiers in Computational Neuroscience, 9. 29. ISSN 1662-5188 doi: https://doi.org/10.3389/fncom.2015.00029

Bojak, I., Day, H. C. and Liley, D. T. J. (2013) Ketamine, propofol, and the EEG: A neural field analysis of HCN1-mediated interactions. Frontiers in Computational Neuroscience, 7. Article 22. ISSN 1662-5188 doi: https://doi.org/10.3389/fncom.2013.00022

Trong, M. N., Bojak, I. and Knösche, T. R. (2013) Associating spontaneous with evoked activity in a neural mass model of cat visual cortex. NeuroImage, 66. pp. 80-87. ISSN 1053-8119 doi: https://doi.org/10.1016/j.neuroimage.2012.10.024

Viriyopase, A., Bojak, I., Zeitler, M. and Gielen, S. (2012) When long-range zero-lag synchronization is feasible in cortical networks. Frontiers in Computational Neuroscience, 6. Article 49. ISSN 1662-5188 doi: https://doi.org/10.3389/fncom.2012.00049

Coombes, S., Schmidt, H. and Bojak, I. (2012) Interface dynamics in planar neural field models. The Journal of Mathematical Neuroscience, 2 (1). 9. ISSN 2190-8567 doi: https://doi.org/10.1186/2190-8567-2-9

Frascoli, F., van Veen, L., Bojak, I. and Liley, D. T.J. (2011) Metabifurcation analysis of a mean field model of the cortex. Physica D: Nonlinear Phenomena, 240 (11). pp. 949-962. ISSN 0167-2789 doi: https://doi.org/10.1016/j.physd.2011.02.002

Scheeringa, R., Mazaheri, A., Bojak, I., Norris, D. G. N. and Kleinschmidt, A. (2011) Modulation of visually evoked cortical fMRI responses by phase of ongoing occipital alpha oscillations. Journal of Neuroscience, 31 (10). pp. 3813-3820. ISSN 1529-2401 doi: https://doi.org/10.1523/JNEUROSCI.4697-10.2011

Bojak, I., Oostendorp, T. F., Reid, A. T. and Kotter, R. (2011) Towards a model-based integration of co-registered electroencephalography/functional magnetic resonance imaging data with realistic neural population meshes. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 369 (1952). pp. 3785-3801. ISSN 1364-503X doi: https://doi.org/10.1098/rsta.2011.0080

Bojak, I. and Liley, D. (2010) Axonal velocity distributions in neural feld equations. PLoS Computational Biology, 6 (1). pp. 1-25. ISSN 1553-734X doi: https://doi.org/10.1371/journal.pcbi.1000653

Bojak, I., Oostendorp, T. F., Reid, A. T. and Kotter, R. (2010) Connecting mean field models of neural activity to EEG and fMRI data. Brain Topography, 23 (2). pp. 139-149. ISSN 1573-6792 doi: https://doi.org/10.1007/s10548-010-0140-3

Bakker, R., Schubert, D., Levels, K., Bezgin, G., Bojak, I. and Kötter, R. (2009) Classification of cortical microcircuits based on micro-electrode-array data from slices of rat barrel cortex. Neural Networks, 22 (8). pp. 1159-1168. ISSN 0893-6080 doi: https://doi.org/10.1016/j.neunet.2009.07.014

Bojak, I., Oostendorp, T. F., Reid, A. T. and Kötter, R. (2009) Realistic mean field forward predictions for the integration of co-registered EEG/fMRI. BMC Neuroscience, 10 (Suppl 1). L2. ISSN 1471-2202 doi: https://doi.org/10.1186/1471-2202-10-S1-L2

Foster, B. L., Bojak, I. and Liley, D. T. J. (2008) Population based models of cortical drug response: insights from anaesthesia. Cognitive Neurodynamics, 2 (4). pp. 283-296. ISSN 1871-4099 doi: https://doi.org/10.1007/s11571-008-9063-z

Coombes, S., Venkov, N., Shiau, L., Bojak, I., Liley, D. and Laing, C. (2007) Modeling electrocortical activity through improved local approximations of integral neural field equations. Physical Review E, 76 (5). 051901. ISSN 1539-3755 doi: https://doi.org/10.1103/PhysRevE.76.051901

Bojak, I. and Liley, D. T. J. (2007) Self-organized 40Hz synchronization in a physiological theory of EEG. Neurocomputing, 70 (10-12). pp. 2085-2090. ISSN 0925-2312 doi: https://doi.org/10.1016/j.neucom.2006.10.087

Bojak, I. and Liley, D. (2005) Modeling the effects of anesthesia on the electroencephalogram. Physical Review E, 71 (4). 041902. ISSN 1539-3755 doi: https://doi.org/10.1103/PhysRevE.71.041902

Liley, D.T.J. and Bojak, I. (2005) Understanding the transition to seizure by modeling the epileptiform activity of general anesthetic agents. Journal of Clinical Neurophysiology, 22 (5). pp. 300-313. ISSN 1537-1603

Bojak, I., Liley, D.T.J., Cadusch, P.J. and Cheng, K. (2004) Electrorhythmogenesis and anaesthesia in a physiological mean field theory. Neurocomputing, 58-60. pp. 1197-1202. ISSN 0925-2312 doi: https://doi.org/10.1016/j.neucom.2004.01.185

Bojak, I. and Stratmann, M. (2003) Next-to-leading order QCD corrections to the polarized hadroproduction of heavy flavors. Physical Review D, 67 (3). 034010. ISSN 1550-2368 doi: https://doi.org/10.1103/PhysRevD.67.034010

Bojak, I. (2003) Polarized hadro- and photoproduction of heavy quarks in NLO QCD. International Journal of Modern Physics A, 18 (08). pp. 1477-1480. ISSN 0217-751X doi: https://doi.org/10.1142/S0217751X03014940

Bojak, I. and Stratmann, M. (2000) Erratum to: “Photoproduction of heavy quarks in next-to-leading order QCD with longitudinally polarized initial states” [Nucl. Phys. B 540 (1999) 345]. Nuclear Physics B, 569 (1-3). p. 694. ISSN 0550-3213 doi: https://doi.org/10.1016/S0550-3213(99)00769-5

Bojak, I. and Stratmann, M. (1999) Photoproduction of heavy quarks in next-to-leading order QCD with longitudinally polarized initial states. Nuclear Physics B, 540 (1-2). pp. 345-381. ISSN 0550-3213 doi: https://doi.org/10.1016/S0550-3213(98)00751-2

Bojak, I. (1999) Towards polarized hadroproduction of heavy quarks. Nuclear Physics B: Proceedings Supplements, 79 (1-3). pp. 599-601. ISSN 0920-5632 doi: https://doi.org/10.1016/S0920-5632(99)00794-X

Bojak, I. and Stratmann, M. (1998) Next-to-leading order QCD corrections to the polarized photoproduction of heavy flavors. Physics Letters B, 433 (3-4). pp. 411-418. ISSN 0370-2693 doi: https://doi.org/10.1016/S0370-2693(98)00723-0

Bojak, I. and Ernst, M. (1997) Limitations of small x resummation methods from F2data. Nuclear Physics B, 508 (3). pp. 731-752. ISSN 0550-3213 doi: https://doi.org/10.1016/S0550-3213(97)00656-1

Bojak, I. and Ernst, M. (1997) Small x resummations confronted with F2(x, Q2) data. Physics Letters B, 397 (3-4). pp. 296-304. ISSN 0370-2693 doi: https://doi.org/10.1016/S0370-2693(97)00177-9

Bojak, I. and Ernst, M. (1996) Balitskiǐ-Fadin-Kuraev-Lipatov equation versus data from DESY HERA. Physical Review D, 53 (1). pp. 80-88. ISSN 1550-2368 doi: https://doi.org/10.1103/PhysRevD.53.80

Book or Report Section

Bojak, I. and Breakspear, M. (2014) Neuroimaging, neural population models for. In: Encyclopedia of Computational Neuroscience. Springer, pp. 1-29. ISBN 9781461473206 doi: https://doi.org/10.1007/978-1-4614-7320-6_70-1

Bojak, I. (2014) Gamma rhythm, neural population models of the. In: Jaeger, D. and Jung, R. (eds.) Encyclopedia of Computational Neuroscience. Springer-Verlag Berlin Heidelberg, pp. 1-10. ISBN 9781461473206 doi: https://doi.org/10.1007/978-1-4614-7320-6_61-1

Bojak, I. (2014) Neural population models and cortical field theory: overview. In: Encyclopedia of Computational Neuroscience. Springer, pp. 1-3. ISBN 9781461473206 doi: https://doi.org/10.1007/978-1-4614-7320-6_759-1

Liley, D. T. J., Foster, B. L. and Bojak, I. (2012) Co-operative populations of neurons: mean field models of mesoscopic brain activity. In: Le Nov`ere, N. (ed.) Computational Systems Neurobiology. Springer, Dordrecht, pp. 317-364. ISBN 9789400738577 doi: https://doi.org/10.1007/978-94-007-3858-4_11

Liley, D. T. J., Foster, B. L. and Bojak, I. (2011) A mesoscopic modelling approach to anaesthetic action on brain electrical activity. In: Hutt, A. (ed.) Sleep and Anesthesia: Neural Correlates in Theory and Experiment. Springer Series in Computational Neuroscience (15). Springer, New York, pp. 139-166. ISBN 9781461401728 doi: https://doi.org/10.1007/978-1-4614-0173-5_7

Liley, D.T.J., Bojak, I., Dafilis, M.P., van Veen, L., Frascoli, F. and Foster, B.L. (2009) Bifurcations and state changes in the human alpha rhythm: Theory and experiment. In: Steyn-Ross, A. D. and Steyn-Ross, M. (eds.) Modeling Phase Transitions in the Brain. Springer Series in Computational Neuroscience (4). Springer, New York, pp. 117-145. ISBN 9781441907950 doi: https://doi.org/10.1007/978-1-4419-0796-7_6

Bojak, I., Makdisi, Y.I. and Luccio, A.U. (2003) Polarized hadroproduction of open heavy quarks in NLO QCD at JHF and RHIC. In: Makdisi, Y.I., Luccio, A.U. and MacKay, W.W. (eds.) SPIN 2002: 15th international spin physics symposium and workshop on polarized electron sources and polarimeters. American Institute of Physics, New York, pp. 338-342. ISBN 0735401365 doi: https://doi.org/10.1063/1.1607155

Conference or Workshop Item

Maybank, P. ORCID: https://orcid.org/0000-0001-8427-2449, Peltzer, P., Naumann, U. and Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 (2020) MCMC for Bayesian uncertainty quantification from time-series data. In: International Conference on Computational Science 2020, 3-5 Jun 2020, Amsterdam, Netherlands, pp. 707-718. doi: https://doi.org/10.1007/978-3-030-50436-6_52

Foster, B. L., Bojak, I. and Liley, D. T. J. (2011) Understanding the effects of anesthetic agents on the EEG through neural field theory. In: 33rd Annual International Conference of the IEEE EMBS, 30 Aug - 03 Sep 2011, Boston, Massachusetts, pp. 4709-4712.

Frascoli, F., Dafilis, M. P., van Veen, L., Bojak, I. and Liley, D. T. J. (2008) Dynamical complexity in a mean-field model of human EEG. In: Biomedical Applications of Micro- and Nanoengineering IV and Complex Systems, 09 Dec 2008, Melbourne, Australia. doi: https://doi.org/10.1117/12.813966 (72700V)

Book

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Linster, C., eds. (2021) 30th Annual Computational Neuroscience Meeting: CNS*2021 – meeting abstracts. Springer, pp. 3-208. doi: https://doi.org/10.1007/s10827-021-00801-9 (Journal of Computational Neuroscience - Supplement Issue)

Bojak, I. ORCID: https://orcid.org/0000-0003-1765-3502 and Nowotny, T., eds. (2020) 29th Annual Computational Neuroscience Meeting: CNS*2020. Springer Nature. doi: https://doi.org/10.1186/s12868-020-00593-1 (BMC Neuroscience)

Bojak, I. and Nowotny, T., eds. (2019) 28th Annual Computational Neuroscience Meeting: CNS*2019. BMC Neuroscience, pp190. doi: https://doi.org/10.1186/s12868-019-0538-0

Bojak, I. and Nowotny, T., eds. (2018) 27th Annual Computational Neuroscience Meeting (CNS*2018): Part One. BMC Neuroscience, pp98. doi: https://doi.org/10.1186/s12868-018-0452-x

Bojak, I. and Nowotny, T., eds. (2018) 27th Annual Computational Neuroscience Meeting (CNS*2018): Part Two. BMC Neuroscience, pp140. doi: https://doi.org/10.1186/s12868-018-0451-y

Bojak, I. and Burkitt, A., eds. (2017) 26th annual computational neuroscience meeting (CNS*2017): part 1. BMC Neuroscience, pp14. doi: https://doi.org/10.1186/s12868-017-0370-3

Bojak, I. and Burkitt, A., eds. (2017) 26th annual computational neuroscience meeting (CNS*2017): part 2. BMC Neuroscience, pp93. doi: https://doi.org/10.1186/s12868-017-0371-2

Bojak, I. and Burkitt, A., eds. (2017) 26th annual computational neuroscience meeting (CNS*2017): part 3. BMC Neuroscience, pp176. doi: https://doi.org/10.1186/s12868-017-0372-1

Bojak, I. and Burkitt, A., eds. (2016) 25th annual computational neuroscience meeting: CNS*2016. BMC Neuroscience, pp112. doi: https://doi.org/10.1186/s12868-016-0283-6

Thesis

Bojak, I. (2000) NLO QCD Corrections to the Polarized Photo- and Hadroproduction of Heavy Quarks. PhD thesis, University of Dortmund.