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Adiyaman, R. and McGuffin, L. J. ORCID: https://orcid.org/0000-0003-4501-4767 (2023) Using local protein model quality estimates to guide a molecular dynamics-based refinement strategy. In: Filipek, S. (ed.) Homology Modeling: Methods and Protocols. Methods in Molecular Biology. Springer Nature, New York, pp. 119-140. ISBN 9781071629734 doi: https://doi.org/10.1007/978-1-0716-2974-1_7

Adiyaman, R., Edmunds, N. S., Genc, A. G., Alharbi, S. M. A. and McGuffin, L. ORCID: https://orcid.org/0000-0003-4501-4767 (2023) Improvement of protein tertiary and quaternary structure predictions using the ReFOLD refinement method and the AlphaFold2 recycling process. Bioinformatics Advances, 3 (1). vbad078. ISSN 2635-0041 doi: https://doi.org/10.1093/bioadv/vbad078

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Aldaghmi, A. S. M. (2023) Understanding the mechanisms of the regulation of platelet function by thiol isomerase enzymes. PhD thesis, University of Reading. doi: https://doi.org/10.48683/1926.00119425

Alharbi, S. M. A. and McGuffin, L. J. ORCID: https://orcid.org/0000-0003-4501-4767 (2023) Machine learning methods for predicting protein contacts. In: Kurgan, L. (ed.) Machine Learning in Bioinformatics of Protein Sequences: Algorithms, Databases and Resources for Modern Protein Bioinformatics. World Scientific, pp. 155-181. ISBN 9789811258572 doi: https://doi.org/10.1142/9789811258589_0006

B

Bye, A. P. ORCID: https://orcid.org/0000-0002-2061-2253, Kriek, N., Sage, T., Rawlings, S. J., Prodger, C., Kesavan, M., Lees, C., Booth, S., Cowen, L. G., Shefferd, K., Desborough, M. J., Gibbins, J. M. ORCID: https://orcid.org/0000-0002-0372-5352 and Eyre, T. A. (2023) Pirtobrutinib results in reversible platelet dysfunction compared to ibrutinib and acalabrutinib. Haematologica, 108 (5). ISSN 1592-8721 doi: https://doi.org/10.3324/haematol.2022.281402

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Cheung, H. Y. F., Zou, J., Tantiwong, C., Fernandez, D. I., Huang, J., Ahrends, R., Roest, M., Cavill, R., Gibbins, J. ORCID: https://orcid.org/0000-0002-0372-5352 and Heemskerk, J. W. M. (2023) High-throughput assessment identifying major platelet Ca2+ entry pathways via tyrosine kinase-linked and G protein-coupled receptors. Cell Calcium, 112. 102738. ISSN 0143-4160 doi: https://doi.org/10.1016/j.ceca.2023.102738

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De Simone, I. (2023) Novel mechanisms of platelet activation and sustained signalling through GPVI and PAR1. PhD thesis, University of Reading. doi: https://doi.org/10.48683/1926.00112631

Dodd, J., Sweby, P. K. ORCID: https://orcid.org/0009-0003-8488-0251, Mayes, S., Murchie, E. H., Karunaratne, A. S., Massawe, F. and Tindall, M. J. (2023) A multiscale mathematical model describing the growth and development of bambara groundnut. Journal of Theoretical Biology, 560. 111373. ISSN 0022-5193 doi: https://doi.org/10.1016/j.jtbi.2022.111373

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Edmunds, N. S., Alharbi, S. M.A., Genc, A. G., Adiyaman, R. and McGuffin, L. J. ORCID: https://orcid.org/0000-0003-4501-4767 (2023) Estimation of model accuracy in CASP15 using the ModFOLDdock server. Proteins: Structure, Function, and Bioinformatics, 91 (12). pp. 1871-1878. ISSN 1097-0134 doi: https://doi.org/10.1002/prot.26532

G

Gelzinis, J. A., Szahaj, M. K., Bekendam, R. H., Wurl, S. E., Pantos, M. M., Verbetsky, C. A., Dufresne, A., Shea, M., Howard, K. C., Tsodikov, O. V., Garneau‐Tsodikova, S., Zwicker, J. I. and Kennedy, D. R. ORCID: https://orcid.org/0000-0002-4359-6911 (2023) Targeting thiol isomerase activity with zafirlukast to treat ovarian cancer from the bench to clinic. The FASEB Journal, 37 (5). e22914. ISSN 1530-6860 doi: https://doi.org/10.1096/fj.202201952r

Gerencer, M. and McGuffin, L. J. ORCID: https://orcid.org/0000-0003-4501-4767 (2023) Are the integrin binding motifs within SARS CoV-2 spike protein and MHC class II alleles playing the key role in COVID-19? Frontiers in Immunology, 14. ISSN 1664-3224 doi: https://doi.org/10.3389/fimmu.2023.1177691

Gibbins, J. M. ORCID: https://orcid.org/0000-0002-0372-5352 (2023) Adding fuel to the flames in pre-eclampsia: the platelet connection. Journal of Thrombosis and Haemostasis, 21 (7). pp. 1750-1752. ISSN 1538-7933 doi: https://doi.org/10.1016/j.jtha.2023.03.031

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Kuravi, S. J., Ahmed, N. S., Taylor, K. A. ORCID: https://orcid.org/0000-0002-4599-7727, Capes, E. M., Bye, A. ORCID: https://orcid.org/0000-0002-2061-2253, Unsworth, A. J., Gibbins, J. M. ORCID: https://orcid.org/0000-0002-0372-5352 and Pugh, N. (2023) Delineating zinc influx mechanisms during platelet activation. International Journal of Molecular Sciences, 24 (14). 11689. ISSN 1422-0067 doi: https://doi.org/10.3390/ijms241411689

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Lovegrove, J. A. ORCID: https://orcid.org/0000-0001-7633-9455, O'Sullivan, D. M. ORCID: https://orcid.org/0000-0003-4889-056X, Tosi, P. ORCID: https://orcid.org/0000-0003-4171-6120, Millan, E. ORCID: https://orcid.org/0000-0002-2421-2855, Todman, L. C. ORCID: https://orcid.org/0000-0003-1232-294X, Bishop, J. ORCID: https://orcid.org/0000-0003-2114-230X, Chatzifragkou, A. ORCID: https://orcid.org/0000-0002-9255-7871, Clegg, M. E., Hammond, J. ORCID: https://orcid.org/0000-0002-6241-3551, Jackson, K. G. ORCID: https://orcid.org/0000-0002-0070-3203, Jones, P. J. ORCID: https://orcid.org/0000-0003-3464-5424, Lignou, S. ORCID: https://orcid.org/0000-0001-6971-2258, Macready, A. L. ORCID: https://orcid.org/0000-0003-0368-9336, McMeel, Y., Parker, J. ORCID: https://orcid.org/0000-0003-4121-5481, Rodriguez-Garcia, J. ORCID: https://orcid.org/0000-0002-4986-3144, Sharp, P., Shaw, L. J., Smith, L. G. ORCID: https://orcid.org/0000-0002-9898-9288 and Tebbit, M. (2023) 'Raising the pulse': the environmental, nutritional and health benefits of pulse-enhanced foods. Nutrition Bulletin, 48 (1). pp. 134-143. ISSN 1471-9827 doi: https://doi.org/10.1111/nbu.12601

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Maghrabi, A. H. A., Aldowsari, F. M. F. and McGuffin, L. J. ORCID: https://orcid.org/0000-0003-4501-4767 (2023) Quality estimates for 3D protein models. In: Filipek, S. (ed.) Homology Modeling: Methods and Protocols. Methods in Molecular Biology, 2627. Springer Nature, New York, pp. 101-118. ISBN 9781071629734 doi: https://doi.org/10.1007/978-1-0716-2974-1_6

Markey, O., Garcimartín, A., Vasilopoulou, D., Kliem, K. E. ORCID: https://orcid.org/0000-0002-0058-8225, Fagan, C. C. ORCID: https://orcid.org/0000-0002-2101-8694, Humphries, D. J., Todd, S. ORCID: https://orcid.org/0000-0002-9981-923X, Givens, D. I. ORCID: https://orcid.org/0000-0002-6754-6935, Lovegrove, J. A. ORCID: https://orcid.org/0000-0001-7633-9455 and Jackson, K. G. ORCID: https://orcid.org/0000-0002-0070-3203 (2023) Impact of dairy fat manipulation on endothelial function and lipid regulation in human aortic endothelial cells exposed to human plasma samples: an in vitro investigation from the RESET study. European Journal of Nutrition. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-023-03284-9

McGuffin, L. J. ORCID: https://orcid.org/0000-0003-4501-4767, Edmunds, N. S., Genc, A. G., Alharbi, S. M. A., Salehe, B. R. and Adiyaman, R. (2023) Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers. Nucleic Acids Research, 51 (W1). W274-W280. ISSN 1362-4962 doi: https://doi.org/10.1093/nar/gkad297

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N

Nelson, M. R., Gibbins, J. M. ORCID: https://orcid.org/0000-0002-0372-5352 and Dunster, J. L. ORCID: https://orcid.org/0000-0001-8986-4902 (2023) Platelet-driven routes to chaos in a model of hepatitis. Chaos, Solitons & Fractals, 170. 113338. ISSN 1873-2887 doi: https://doi.org/10.1016/j.chaos.2023.113338

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Provenzale, I. (2023) The modulatory roles of collagen and endothelial cells on platelet function. PhD thesis, University of Reading. doi: https://doi.org/10.48683/1926.00118921

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Ranjbar, J., Njoroge, W. ORCID: https://orcid.org/0009-0003-1365-5129, Gibbins, J. M. ORCID: https://orcid.org/0000-0002-0372-5352, Roach, P. ORCID: https://orcid.org/0000-0003-4135-9733, Yang, Y. ORCID: https://orcid.org/0000-0002-1362-6040 and Harper, A. G. S. ORCID: https://orcid.org/0000-0003-2413-4823 (2023) Developing biomimetic hydrogels of the arterial wall as a prothrombotic substrate for in vitro human thrombosis models. Gels, 9 (6). 477. ISSN 2310-2861 doi: https://doi.org/10.3390/gels9060477

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Sellem, L., Eichelmann, F., Jackson, K. G. ORCID: https://orcid.org/0000-0002-0070-3203, Wittenbecher, C., Schultze, M. and Lovegrove, J. A. ORCID: https://orcid.org/0000-0001-7633-9455 (2023) Replacement of dietary saturated with unsaturated fatty acids is associated with beneficial effects on lipidome metabolites: a secondary analysis of a randomized trial. American Journal of Clinical Nutrition, 117 (6). pp. 1248-1261. ISSN 0002-9165 doi: https://doi.org/10.1016/j.ajcnut.2023.03.024

Stowell, J. D., Mela, D. J., Coppens, P., Lovegrove, J. A. ORCID: https://orcid.org/0000-0001-7633-9455, McArdle, H. J., van der Sman, F. J. P., Verhagen, H., Young, H. A. and Young, I. S. (2023) Dietary supplements, 'functional' and 'super' foods: Science, regulations and roles in the diet”. Royal Society of Medicine, London, 29 November 2022. In: Meeting on “Dietary supplements, 'functional' and 'super' foods: Science, regulations and roles in the diet”, 29 November 2022, Royal Society of Medicine, London. doi: https://doi.org/10.31219/osf.io/9z3x2

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Tantiwong, C., Dunster, J. L. ORCID: https://orcid.org/0000-0001-8986-4902, Cavill, R., Tomlinson, M. G., Wierling, C., Heemskerk, J. W. M. and Gibbins, J. M. ORCID: https://orcid.org/0000-0002-0372-5352 (2023) An agent-based approach for modelling and simulation of glycoprotein VI receptor diffusion, localisation and dimerisation in platelet lipid rafts. Scientific Reports, 13. 3906. ISSN 2045-2322 doi: https://doi.org/10.1038/s41598-023-30884-6

Thienel, M., Müller-Reif, J. B., Zhang, Z., Ehreiser, V., Huth, J., Shchurovska, K., Kilani, B., Schweizer, L., Geyer, P. E., Zweibel, M., Novotny, J., Lüsebrink, E., Little, G., Orban, M., Nicolai, L., El Nemr, S., Titova, A., Spannagl, M., Kindberg, J., Evans, A. L., Mach, O., Vogel, M., Tiedt, S., Ormanns, S., Kessler, B., Dueck, A., Friebe, A., Godsk Jørgensen, P., Majzoub-Altweck, M., Blutke, A., Polzin, A., Stark, K., Kääb, S., Maier, D., Gibbins, J. M. ORCID: https://orcid.org/0000-0002-0372-5352, Limper, U., Frobert, O., Mann, M., Massberg, S. and Petzold, T. (2023) Immobility-associated thromboprotection is conserved across mammalian species from bear to human. Science, 380 (6641). pp. 178-187. ISSN 1095-9203 doi: https://doi.org/10.1126/science.abo5044

Tindall, M. J. ORCID: https://orcid.org/0000-0001-6069-5260, Cucurull-Sanchez, L., Mistry, H. and Yates, J. W.T. (2023) Quantitative systems pharmacology and machine learning: a match made in heaven or hell? The Journal of Pharmacology and Experimental Therapeutics, 387 (1). pp. 92-99. ISSN 1521-0103 doi: https://doi.org/10.1124/jpet.122.001551

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