A

Al-Zeyara, S. A., Jarvis, B. and Mackey, B. M. (2011) The inhibitory effect of natural microflora of food on growth of Listeria monocytogenes in enrichment broths. International Journal of Food Microbiology, 145 (1). pp. 98-105. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2010.11.036

Anjum, M. F., Choudhary, S., Morrison, V., Snow, L. C., Mafura, M., Slickers, P., Ehricht, R. and Woodward, M. J. (2011) Identifying antimicrobial resistance genes of human clinical relevance within Salmonella isolated from food animals in Great Britain. Journal of Antimicrobial Chemotherapy, 66 (3). pp. 550-559. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkq498

Arroyo, C., Cebrián, G., Mackey, B. M., Condón, S. and Pagán, R. (2011) Environmental factors influencing the inactivation of Cronobacter sakazakii by high hydrostatic pressure. International Journal of Food Microbiology, 147 (2). pp. 134-143. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2011.03.018

B

Brouwer, A., Hill, A. and Woodward, M. J. (2011) What makes a Salmonella strain epidemic? An expert opinion workshop. Veterinary Record, 168 (4). 98. ISSN 2042-7670 doi: https://doi.org/10.1136/vr.c5429

C

Chapman, C. M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Rowland, I. (2011) Health benefits of probiotics: are mixtures more effective than single strains? European Journal of Nutrition, 50 (1). pp. 1-17. ISSN 1436-6207 doi: https://doi.org/10.1007/s00394-010-0166-z

Charoenwong, D., Andrews, S. ORCID: https://orcid.org/0000-0003-4295-2686 and Mackey, B. (2011) Role of rpoS in the Development of Cell Envelope Resilience and Pressure Resistance in Stationary-Phase Escherichia coli. Applied and Environmental Microbiology, 77 (15). pp. 5220-5229. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.00648-11

Claus, S. P., Ellero, S. L., Berger, B., Krause, L., Bruttin, A., Molina, J., Paris, A., Want, E. J., de Waziers, I., Cloarec, O., Richards, S. E., Wang, Y., Dumas, M.-E., Ross, A., Rezzi, S., Kochhar, S., Van Bladeren, P., Lindon, J. C., Holmes, E. and Nicholson, J. K. (2011) Colonization-induced host-gut microbial metabolic interaction. mBio, 2 (2). e00271-10. ISSN 2150-7511 doi: https://doi.org/10.1128/mBio.00271-10

Costabile, A., Sanghi, S., Martin-Palaez, S., Mueller-Harvey, I., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A. and Klinder, A. (2011) Inhibition of Salmonella Typhimurium by tannins in vitro. Journal of Food, Agriculture & Environment, 9 (1). pp. 119-124. ISSN 1459-0263

Cottell, J. L., Webber, M. A., Coldham, N. G., Taylor, D. L., Cerdeno-Tarraga, A. M., Hauser, H., Thomson, N. R., Woodward, M. and Piddock, L. J. V. (2011) Complete sequence and molecular epidemiology of IncK epidemic plasmid encoding bla(CTX-M-14). Emerging Infectious Diseases, 17 (4). pp. 645-652. ISSN 1080-6040 doi: https://doi.org/10.3201/eid1704.101009

Cysneiros, D., Banks, C. J., Heaven, S. and Karatzas, K.-A. G. (2011) The role of phase separation and feed cycle length in leach beds coupled to methanogenic reactors for digestion of a solid substrate (Part 2): Hydrolysis, acidification and methanogenesis in a two-phase system. Bioresource Technology, 102 (16). pp. 7393-7400. ISSN 0960-8524 doi: https://doi.org/10.1016/j.biortech.2011.05.042

D

Drakoularakou, A., Rastall, R. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2011) Functional foods for the gut: probiotics, prebiotics and synbiotics. In: Saarela, M. (ed.) Functional foods: concept to product. Second edition. Woodhead publishing series in food science, technology and nutrition (205). Woodhead Publishing Ltd, pp. 449-470. ISBN 9781845696900

E

Ellero-Simatos, S., Claus, S. P., Benelli, C., Forest, C., Letourneur, F., Cagnard, N., Beaune, P. H. and de Waziers, I. (2011) Combined transcriptomic-(1)H NMR metabonomic study reveals yhat monoethylhexyl phthalate stimulates adipogenesis and glyceroneogenesis in human adipocytes. Journal of Proteome Research, 10 (12). pp. 5493-5502. ISSN 1535-3907 doi: https://doi.org/10.1021/pr200765v

F

Falchero, L., Brown, R., Hanley, S., Karp, A., Shield, I. and Mueller-Harvey, I. (2011) The structural diversity of condensed tannins in willows (salix spp.): a frist screening to improve the nutritional quality of ruminant products. Advances in Animal Biosciences, 2 (2). p. 410. ISSN 2040-4719

Fogliano, V., Corollaro, M. L., Vitaglione, P., Napolitano, A., Ferracane, R., Travaglia, F., Arlorio, M., Costabile, A., Klinder, A. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2011) In vitro bioaccessibility and gut biotransformation of polyphenols present in the water-insoluble cocoa fraction. Molecular Nutrition & Food Research, 55 (Supplement). pp. 44-55. ISSN 1613-4125 doi: https://doi.org/10.1002/mnfr.201000360

G

Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, (2011) Probiotics and prebiotics. The Biomedical & Life Sciences Collection, Henry Stewart Talks Ltd, London.

Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Brummer, R. J., Isolauri, E., Lochs, H., Morelli, L., Ockhuizen, T., Rowland, I. R., Schrenzenmeir, J., Stanton, C. and Verbeke, K. (2011) The design of probiotic studies to substantiate health claims. Gut Microbes, 2 (5). pp. 299-305. ISSN 1949-0984 doi: https://doi.org/10.4161/gmic.2.5.18002

Givens, D. I. ORCID: https://orcid.org/0000-0002-6754-6935, Gibbs, R. A. ORCID: https://orcid.org/0000-0001-5017-7283, Rymer, C. ORCID: https://orcid.org/0000-0002-3535-4330 and Brown, R. H. (2011) Effect of intensive vs. free range production on the fat and fatty acid composition of whole birds and edible portions of retail chickens in the UK. Food Chemistry, 127 (4). pp. 1549-1554. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2011.02.016

Guarner, F., Sanders, M. E., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Klaenhammer, T., Cabana, M., Scott, K., Reid, G., Delzenne, N. M., Fahey, G. and Hill, C. (2011) Probiotic and prebiotics claims in Europe: Seeking a clear roadmap. British Journal of Nutrition, 106 (11). pp. 1765-1767. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114511002248

H

Hatew, B., Pellikaan, W. F., Hendriks, W. H., Mueller-Harvey, I. and Stringano, E. (2011) Effects of condensed tannin extracts from sainfoin (Onobrychis viciifolia Scop) on rumen in vitro methane production and fermentation characteristics. Advances in Animal Biosciences, 2 (2). p. 526. ISSN 2040-4719 doi: http://journals.cambridge.org/action/displayIssue?decade=2010&jid=ABS&volumeId=2&issueId=02&iid=8351771

Heath, P. and Claus, S. (2011) Assessing hepatic metabolic changes during progressive colonization of germ-free mouse by 1H NMR spectroscopy. Journal of Visualized Experiments, 58. ISSN 1940-087X doi: https://doi.org/10.3791/3642

Heath, P. and Claus, S. (2011) Assessing hepatic metabolic changes during progressive colonization of germ-free mouse by 1H NMR spectroscopy. [Video]

Honda, H., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Farmer, S., Keller, D. and McCartney, A. L. (2011) Use of a continuous culture fermentation system to investigate the effect of GanedenBC30 (Bacillus coagulans GBI-30, 6086) supplementation on pathogen survival in the human gut microbiota. Anaerobe, 17 (1). pp. 36-42. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2010.12.006

Honda, H., Hoyles, L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Farmer, S., Keller, D. and McCartney, A. L. (2011) Impact of GanedenBC30 (Bacillus coagulans GBI-30, 6086) on population dynamics of the human gut microbiota in a continuous culture fermentation system. International Journal of Probiotics and Prebiotics, 6 (1). pp. 65-72. ISSN 1555-1431

I

Inness, V. L., Khoo, C., Gross, K. L., Hoyles, L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and McCartney, A. L. (2011) Use of static batch culture systems to investigate the fermentation effects of selected oligosaccharides and fibres by the canine faecal microbiota. International Journal of Probiotics and Prebiotics, 6 (1). pp. 57-64. ISSN 1555-1431

J

Jia, J., Frantz, N., Khoo, C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A. and McCartney, A. L. (2011) Investigation of the faecal microbiota of geriatric cats. Letters in Applied Microbiology, 53 (3). pp. 288-293. ISSN 1472-765X doi: https://doi.org/10.1111/j.1472-765X.2011.03105.x

Jia, J., Frantz, N., Khoo, C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A. and McCartney, A. L. (2011) Investigation of the faecal microbiota of kittens: monitoring bacterial succession and effect of diet. FEMS Microbiology Ecology, 78 (2). pp. 395-404. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2011.01172.x

K

Kolida, S. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2011) Synbiotics in health and disease. Food Science and Technology, 2. pp. 373-393.

L

Le, T. M. V., AbuOun, M., Morrison, V., Thomson, N., James, I. C., Woodward, M. J., Nguyen, V. V. C., Jeremy, F., Constance, S. and Stephen, B. (2011) Differential phenotypic and genotypic characteristics of qnrS1-harboring plasmids carried by hospital and community commensal enterobacteria. Antimicrobial Agents and Chemotherapy, 55 (4). pp. 1798-1802. ISSN 1098-6596 doi: https://doi.org/10.1128/aac.01200-10

M

Manolaraki, F., Smith, L., Hayot, C., Pelikaan, W., Halbwrith, H., Stich, K., Treutter, D., Regos, I., Mueller-Harvey, I., Stringano, E. and Hoste, H. (2011) Differences in anthelmintic activity of sainfoin (Onobrychis viciifoliae) depend on varieties: possible relationships with flavonoid composition. Advances in Animal Biosciences, 2 (2). p. 345. ISSN 2040-4719

Mappley, L. J., Tchorzewska, M. A., Cooley, W. A., Woodward, M. J. and La Ragione, R. M. (2011) Lactobacilli antagonize the growth, motility, and adherence of brachyspira pilosicoli: a potential intervention against avian intestinal spirochetosis. Applied and Environmental Microbiology, 77 (15). pp. 5402-5411. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.00185-11

Merrifield, C. A., Lewis, M., Claus, S. P., Beckonert, O. P., Dumas, M.-E., Duncker, S., Kochhar, S., Rezzi, S., Lindon, J. C., Bailey, M., Holmes, E. and Nicholson, J. K. (2011) A metabolic system-wide characterisation of the pig: a model for human physiology. Molecular Biosystems, 7 (9). pp. 2577-2588. ISSN 1742-206X doi: https://doi.org/10.1039/c1mb05023k

Mueller-Harvey, I., Martin-Lorenzo , M., Stringano, E., Barnes, R. J., Oliver, J., Theodoridou, K., Aufrere, J., Bayissa, C., Pellikaan, W., Manolaraki, F., Hoste, F., Hayot Carbonero, C. and Smith, L. (2011) NIR spectroscopy for predicting the nutritional, anthelminitic and environmental effects of sainfoin. Advances in Animal Biosciences, 2 (2). p. 265. ISSN 2040-4719

Mulder, I., Schmidt, B., Lewis, M., Delday, M., Stokes, C., Bailey, M., Aminov, R., Gill, B., Pluske, J., Mayer, C.-D. and Kelly, D. (2011) Restricting microbial exposure in early life negates the immune benefits associated with gut colonization in environments of high microbial diversity. PLoS ONE, 6 (12). e28279. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0028279

O

O'Byrne, C.P. , Feehily, C. , Ham, R. and Karatzas, K.-A. G. (2011) A modified rapid enzymatic microtiter plate assay for the quantification of intracellular γ-aminobutyric acid and succinate semialdehyde in bacterial cells. Journal of Microbiological Methods, 84 (1). pp. 137-139. ISSN 0167-7012 doi: https://doi.org/10.1016/j.mimet.2010.10.017

Ogué-Bon, E., Khoo, C., Hoyles, L., McCartney, A. L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Rastall, R. A. (2011) In vitro fermentation of rice bran combined with Lactobacillus acidophilus 14 150B or Bifidobacterium longum 05 by the canine faecal microbiota. FEMS microbiology ecology, 75 (3). pp. 365-376. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2010.01014.x

P

Patil, S., Valdramidis, V. P., Karatzas, K. A. G., Cullen, P. J. and Bourke, P. (2011) Assessing the microbial oxidative stress mechanism of ozone treatment through the responses of Escherichia coli mutants. Journal of Applied Microbiology, 111 (1). pp. 136-144. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2011.05021.x

Pellikaan, W. F., Stringano, E., Leenaars, J., Bongers, D. J. G. M., Van Laar-Van Schuppen, S., Plant, J. and Mueller-Harvey, I. (2011) Evaluating the effects of tannins on the extent and rate of in vitro measured gas and methane production using the Automated Pressure Evaluation System (APES). Animal Feed Science and Technology, 166-167. pp. 377-390. ISSN 0377-8401 doi: https://doi.org/10.1016/j.anifeedsci.2011.04.072

S

Saunders, M. P., Wu, G., Abuoun, M., Pan, Z., Anjum, M. and Woodward, M. J. (2011) Optical genetic mapping defines regions of chromosomal variation in serovars of S. enterica subsp enterica of concern for human and animal health. Epidemiology and Infection, 139 (7). pp. 1065-1074. ISSN 0950-2688 doi: https://doi.org/10.1017/s0950268810002086

Schmidt, B., Mulder, I., Musk, C., Aminov, R., Lewis, M., Stokes, C., Bailey, M., Prosser, J., Gill, B., Plusk, J. and Kelly, D. (2011) Establishment of normal gut microbiota is compromised under excessive hygiene conditions. PLoS ONE, 6 (12). e28284. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0028284

Senior, N. J., Bagnall, M. C., Champion, O. L., Reynolds, S. E., La Ragione, R. M., Woodward, M. J., Salguero, F. J. and Titball, R. W. (2011) Galleria mellonella as an infection model for Campylobacter jejuni virulence. Journal of Medical Microbiology, 60 (5). pp. 661-669. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.026658-0

Shen, Q., Tuohy, K. M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Ward, R. E. (2011) In vitro measurement of the impact of human milk oligosaccharides on the faecal microbiota of weaned formula-fed infants compared to a mixture of prebiotic fructooligosaccharides and galactooligosaccharides. Letters in Applied Microbiology, 52 (4). pp. 337-343. ISSN 0266-8254 doi: https://doi.org/10.1111/j.1472-765X.2011.03005.x

Stringano, E., Cramer, R. ORCID: https://orcid.org/0000-0002-8037-2511, Hayes, W. ORCID: https://orcid.org/0000-0003-0047-2991, Smith, C., Gibson, T. and Mueller-Harvey, I. (2011) Deciphering the complexity of sainfoin (Onobrychis viciifolia) proanthocyanidins by MALDI-TOF mass spectrometry with a judicious choice of isotope patterns and matrixes. Analytical Chemistry, 83 (11). pp. 4147-4153. ISSN 0003-2700 doi: https://doi.org/10.1021/ac2003856

Stringano, E., Gea , A., Salminen, J.-P. and Mueller-Harvey, I. (2011) Simple solution for a complex problem: Proanthocyanidins, galloyl glucoses and ellagitannins fit on a single calibration curve in high performance-gel permeation chromatography. Journal of Chromatography A, 1218 (43). pp. 7804-7812. ISSN 0021-9673 doi: https://doi.org/10.1016/j.chroma.2011.08.082

Swann, J. R., Tuohy, K. M., Lindfors, P., Brown, D. T., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Wilson, I. D., Sidaway, J., Nicholson, J. K. and Holmes, E. (2011) Variation in antibiotic-induced microbial recolonization impacts on the host metabolic phenotypes of rats. Journal of Proteome Research, 10 (8). pp. 3590-3603. ISSN 1535-3907 doi: https://doi.org/10.1021/pr200243t

Swann, J. R., Want, E. J., Geier, F. M., Spagou, K., Wilson, I. D. , Sidaway, J. E., Nicholson, J. K. and Holmes, E. (2011) Systemic gut microbial modulation of bile acid metabolism in host tissue compartments. Proceedings of the National Academy of Sciences, 108 (Supplement). pp. 4523-4530. ISSN 1091-6490 doi: https://doi.org/10.1073/pnas.1006734107 (Microbes and Health Sackler Colloquium)

T

Tree, J. J., Roe, A. J., Flockhart, A., McAteer, S. P., Xu, X. F., Shaw, D., Mahajan, A., Beatson, S. A., Best, A., Lotz, S., Woodward, M. J., La Ragione, R., Murphy, K. C., Leong, J. M. and Gally, D. L. (2011) Transcriptional regulators of the GAD acid stress island are carried by effector protein-encoding prophages and indirectly control type III secretion in enterohemorrhagic Escherichia coli O157:H7. Molecular Microbiology, 80 (5). pp. 1349-1365. ISSN 0950-382X doi: https://doi.org/10.1111/j.1365-2958.2011.07650.x

Tzounis, X., Rodriguez Mateos, A., Vulevic, J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Kwik-Uribe, C. and Spencer, J. P. E. ORCID: https://orcid.org/0000-0003-2931-7274 (2011) Prebiotic evaluation of cocoa-derived flavanols in healthy humans by using a randomized, controlled, double-blind, crossover intervention study. American Journal of Clinical Nutrition, 93 (1). pp. 62-72. ISSN 1938-3207 doi: https://doi.org/10.3945/ajcn.110.000075

V

Veereman-Wauters, G., Staelens, S., Van de Broek, H., Plaskie, K., Wesling, F., Roger, L. C., McCartney, A. L. and Assam, P. (2011) Physiological and bifidogenic effects of prebiotic supplements in infant formulae. Journal of Pediatric Gastroenterology and Nutrition, 52 (6). pp. 763-771. ISSN 0277-2116 doi: https://doi.org/10.1097/MPG.0b013e3182139f39

W

Wallace, T. C., Guarner, F., Madsen, K., Cabana, M., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Hentges, E. and Sanders, M. E. (2011) Human gut microbiota and its relationship to health and disease. Nutrition Reviews, 69 (7). pp. 392-403. ISSN 1753-4887 doi: https://doi.org/10.1111/j.1753-4887.2011.00402.x