A

Anastasovska, J., Arora, T., Sanchez Canon, G. J., Parkinson, J. R. C., Tuohy, K., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Nadkarni, N. A., So, P. W., Thomas, E. L., Hankir, M. K., Van Loo, J., Modi, N., Bell, J. D. and Frost, G. (2012) Fermentable carbohydrate alters hypothalamic neuronal activity and protects against the obesogenic environment. Obesity, 20. pp. 1016-1023. ISSN 1930-739X doi: https://doi.org/10.1038/oby.2012.6

Arora, T., Loo, R. L., Anastasovska, J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Tuohy, K. M., Sharma, R. K., Swann, J. R., Deaville, E. R., Sleeth, M. J., Thomas, E. L., Holmes, E., Bell, J. D. and Frost, G. (2012) Differential effects of two fermentable carbohydrates on central appetite regulation and body composition. PLoS ONE, 7. e43263. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0043263

B

Bailey, M., Christoforidou, Z. and Lewis, M. (2012) Evolution of immune systems: specificity and autoreactivity. Autoimmunity Reviews, 12 (6). pp. 643-647. ISSN 1568-9972 doi: https://doi.org/10.1016/j.autrev.2012.10.007

Bailey, M., Christoforidou, Z. and Lewis, M. C. (2012) The evolutionary basis for differences between the immune systems of man, mouse, pig and ruminants. Veterinary Immunology and Immunopathology, 152 (1-2). pp. 13-19. ISSN 0165-2427 doi: https://doi.org/10.1016/j.vetimm.2012.09.022

Brownawell, A. M., Caers, W., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Kendall, C. W.C., Lewis, K. D., Ringel, Y. and Slavin, J. L. (2012) Prebiotics and the health benefits of fiber: current regulatory status, future research, and goals. Journal of Nutrition, 142 (5). pp. 962-974. ISSN 1541-6100 doi: https://doi.org/10.3945/jn.112.158147

C

Costabile, A., Fava, F., Roytio, H., Forssten, S. D., Olli, K., Klievink, J., Rowland, I. R., Ouwehand, A. C., Rastall, R. A., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 (2012) Impact of polydextrose on the faecal microbiota: a double-blind, crossover, placebo-controlled feeding study in healthy human subjects. British Journal of Nutrition, 108 (3). pp. 471-481. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114511005782

Cox, R., Su, T., Clough, H., Woodward, M. J. and Sherlock, C. (2012) Spatial and temporal patterns in antimicrobial resistance of Salmonella Typhimurium in cattle in England and Wales. Epidemiology and Infection, 140 (11). pp. 2062-2073. ISSN 1469-4409 doi: https://doi.org/10.1017/S0950268811002755

Cunningham, K., Claus, S. P., Lindon, J. C., Holmes, E., Everett, J. R., Nicholson, J. K. and Coen, M. (2012) Pharmacometabonomic characterization of xenobiotic and endogenous metabolic phenotypes that account for inter-individual variation in isoniazid-induced toxicological response. Journal of Proteome Research, 11 (9). pp. 4630-4642. ISSN 1535-3907 doi: https://doi.org/10.1021/pr300430u

Cysneiros, D., Banks, C. J., Heaven, S. and Karatzas, K.-A. (2012) The effect of pH control and ‘hydraulic flush’ on hydrolysis and Volatile Fatty Acids (VFA) production and profile in anaerobic leach bed reactors digesting a high solids content substrate. Bioresource Technology. ISSN 0960-8524

Cysneiros, D., Banks, C. J., Heaven, S. and Karatzas, K.-A. G. (2012) The role of phase separation and feed cycle length in leach beds coupled to methanogenic reactors for digestion of a solid substrate (Part 1): Optimisation of reactors’ performance. Bioresource Technology, 103 (1). pp. 56-63. ISSN 0960-8524 doi: https://doi.org/10.1016/j.biortech.2011.09.094

D

Dadkhah, H., Bassami, M. R., Hashemi, S., Shahraz, F., Hosseini, H., Karatzas, K. A. G. and Khaksar, R. (2012) Evaluation and comparison of SYBR Green I Real-Time PCR and TaqMan Real-Time PCR methods for quantitative assay of Listeria monocytogenes in nutrient broth and milk. African Journal of Microbiology Research, 6 (9). pp. 1908-1917. ISSN 1996-0808 doi: https://doi.org/10.5897/AJMR11.889

Donovan, S. M., Schneeman, B., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Sanders, M. E. (2012) Establishing and evaluating health claims for probiotics. Advances in Nutrition, 3 (5). pp. 723-725. ISSN 2156-5376 doi: https://doi.org/10.3945/an.112.002592

F

Feehily, C. and Karatzas, K. A. G. (2012) Role of glutamate metabolism in bacterial responses towards acid and other stresses. Journal of Applied Microbiology, 114 (1). pp. 11-24. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2012.05434

Foster, G., Wragg, P., Koylass, M. S., Whatmore, A. M. and Hoyles, L. (2012) Isolation of Actinomyces hyovaginalis from sheep and comparison with isolates obtained from pigs. Veterinary Microbiology, 157 (3-4). pp. 471-475. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2012.01.003

H

Hidalgo, M., Oruna-Concha, M. J. ORCID: https://orcid.org/0000-0001-7916-1592, Kolida, S., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Kallithraka, S., Spencer, J. P. E. ORCID: https://orcid.org/0000-0003-2931-7274, Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and de Pascual-Teresa, S. (2012) Metabolism of anthocyanins by human gut microflora and their influence on gut bacterial growth. Journal of Agricultural and Food Chemistry, 60 (15). pp. 3882-3890. ISSN 0021-8561 doi: https://doi.org/10.1021/jf3002153

Holloway, A. C., Mueller-Harvey, I., Gould, S. W. J., Fielder, M. D., Naughton, D. P. and Kelly, A. F. (2012) The effect of copper(II), iron(II) sulphate and vitamin C combinations on the weak antimicrobial activity of (+)-catechin against Staphylococcus aureus and other microbes. Metallomics, 4. pp. 1280-1286. ISSN 1756-5901 doi: https://doi.org/10.1039/C2MT20143G

Holmes, E., Kinross, J., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Burcelin, R., Jia, W., Pettersen, S. and Nicholson, J. K. (2012) Therapeutic modulation of microbiota-host metabolic interactions. Science Translational Medicine, 4 (137). 137rv6. ISSN 1946-6234 doi: https://doi.org/10.1126/scitranslmed.3004244

Howarth, G. S., Butler, R. N., Salminen, S., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Donovan, S. M. (2012) Probiotics for optimal nutrition: from efficacy to guidelines. Advances in Nutrition, 3. pp. 720-722. ISSN 2156-5376 doi: https://doi.org/10.3945/an.112.002501

Hoyles, L. and McCartney, A. (2012) Genus IV. Mobiluncus. In: Whitman, W. B., Goodfellow, M., Kaempfer, P., Busse, H.-J., Trujillo, M.E., Ludwig, W., Suzuki, K. -i. and Parte, A. (eds.) Bergey’s Manual of Systematic Bacteriology: 2nd edition. The Actinobacteria, part A. Bergey's Manual of Systematic Bacteriology, 5. Springer, pp. 126-139. ISBN 9780387950433

Hoyles, L., Honda, H., Logan, N. A., Halket, G., La Ragione, R. M. and McCartney, A. L. (2012) Recognition of greater diversity of Bacillus species and related bacteria in human faeces. Research in Microbiology, 163 (1). pp. 3-13. ISSN 0923-2508 doi: https://doi.org/10.1016/j.resmic.2011.10.004

J

Jiménez-Pranteda, M. L., Aguilera, M., McCartney, A. L., Hoyles, L., Jiménez-Valera, M., Náder-Marcías, M. E., Ramos-Cormenzana, A. and Monteoliva-Sánchez, M. (2012) Investigation of the impact of feeding Lactobacillus plantarum CRL 1815 encapsulated in microbially derived polymers on the rat faecal microbiota. Journal of Applied Microbiology, 113 (2). pp. 399-410. ISSN 1365-2672 doi: https://doi.org/10.1111/j.1365-2672.2012.05343.x

K

Karatzas, K.-A. G., Suur, L. and O'Byrne, C. P. (2012) Characterisation of the intracellular-glutamate decarboxylase system (GAD): analysis of its function, transcription and role in the acid resistance of various strains of Listeria monocytogenes. Applied and Environmental Microbiology, 78 (10). pp. 3571-3579. ISSN 1098-5336 doi: https://doi.org/10.1128/​AEM.00227-12

L

La Ragione, R. M., Best, A., Aktan, I., Clifton-Hadley, F. A., Dugdale, A. H., Weyer, U., Crawley, T., Townsend, P., Cooley, W. A., Johnson, L., Wangoo, A., Woodward, M. J. and Wales, A. D. (2012) Escherichia coli O115 forms fewer attaching and effacing lesions in the ovine colon in the presence of E. coli O157:H7. Research in Veterinary Science, 93 (1). pp. 42-45. ISSN 0034-5288 doi: https://doi.org/10.1016/j.rvsc.2011.07.026

Laycock, G., Sait, L., Inman, C., Lewis, M., Smidt, H., van Diemen, P., Jorgensen, F., Stevens, M. and Bailey, M. (2012) A defined intestinal colonization microbiota for gnotobiotic pigs. Veterinary Immunology and Immunopathology, 149 (3-4). pp. 216-224. ISSN 0165-2427 doi: https://doi.org/10.1016/j.vetimm.2012.07.004

Lewis, M. C., Inman, C. F., Patel, D., Schmidt, B., Imke, M., Miller, B., Gill, B. P., Pluske, J., Kelly, D., Stokes, C. R. and Bailey, M. (2012) Direct experimental evidence that early-life farm environment influences regulation of immune responses. Pediatric Allergy and Immunology, 23 (3). pp. 265-269. ISSN 1399-3038 doi: https://doi.org/10.1111/j.1399-3038.2011.01258.x

M

Maccaferri, S., Klinder, A., Cacciatore, S., Chittarari, R., Honda, H., Luchinat, C., Bertini, I., Carnevali, P., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Brigidi, P. and Costabile, A. (2012) In vitro fermentation of potential prebiotic flours from natural sources: impact on the human colonic microbiota and metabolome. Molecular Nutrition & Food Research, 56 (8). pp. 1342-1352. ISSN 1613-4125 doi: https://doi.org/10.1002/mnfr.201200046

Madeo, M., O'Riordan, N., Fuchs, T. M., Utratna, M., Karatzas, K. A. G. and O'Byrne, C. P. (2012) Thiamine plays a critical role in the acid tolerance of Listeria monocytogenes. FEMS Microbiology Letters, 326 (2). pp. 137-143. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.2011.02442.x

Maki, K. C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Dickmann, R. S., Kendall, C. W., Oliver Chen, C.-Y., Costabile, A., Comeli, E. M., McKay, D. L., Almedia, N. G., Jenkins, D., Zello, G. A. and Blumberg, J. B. (2012) Digestive and physiologic effects of a wheat bran extract, arabino-xylan-oligosaccharide, in breakfast cereal. Nutrition, 28 (11-12). pp. 1151-1121. ISSN 0899-9007 doi: https://doi.org/10.1016/j.nut.2012.02.010

Mappley, L. J., Black, M. L., AbuOun, M., Darby, A. C., Woodward, M. J., Parkhill, J., Turner, A. K., Belgard, M. I., La, T., Phillips, N. D., La Ragione, R. M. and Hampson, D. J. (2012) Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity. BMC Genomics, 13. 454. ISSN 1471-2164 doi: https://doi.org/10.1186/1471-2164-13-454

Mestdagh, R., Dumas, M.-E., Rezzi, S., Kochhar, S., Holmes, E., Claus, S. P. and Nicholson, J. K. (2012) Gut microbiota modulate the metabolism of brown adipose tissue in mice. Journal of Proteome Research, 11 (2). pp. 620-630. ISSN 1535-3893 doi: https://doi.org/10.1021/pr200938v

Mueller-Harvey, I., Feucht, W., Polster, J., Trnkova, L., Burgos, P., Parker, A. W. and Botchway, S. W. (2012) Two-photon excitation with pico-second fluorescence lifetime imaging to detect nuclear association of flavanols. Analytica Chimica Acta, 719. pp. 68-75. ISSN 1873-4324 doi: https://doi.org/10.1016/j.aca.2011.12.068

N

Nicholson, J. K., Holmes, E., Kinross, J., Burcelin, R. ORCID: https://orcid.org/0000-0002-0566-0476, Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Jia, W. and Petttersen, S. (2012) Host-gut microbiota metabolic interactions. Science, 336 (6086). pp. 1262-1267. ISSN 1095-9203 doi: https://doi.org/10.1126/science.1223813

Niderkorn, V., Mueller-Harvey, I., Le Morvan, A. and Aufrère, J. (2012) Synergistic effects of mixing cocksfoot and sainfoin on in vitro rumen fermentation: role of condensed tannins. Animal Feed Science and Technology, 178 (1-2). pp. 48-56. ISSN 0377-8401 doi: https://doi.org/10.1016/j.anifeedsci.2012.09.014

Nyangale, E. P., Mottram, D. S. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2012) Gut microbial activity, implications for health and disease: the potential role of metabolite analysis. Journal of Proteome Research, 11 (12). pp. 5573-5585. ISSN 1535-3907 doi: https://doi.org/10.1021/pr300637d

O

O’Neill , H. V. M., Rademacher, M., Mueller-Harvey, I., Stringano, E., Kightley, S. and Wiseman, J. (2012) Standardised ileal digestibility of crude protein and amino acids of UK-grown peas and faba beans by broilers. Animal Feed Science and Technology, 175 (3-4). pp. 158-167. ISSN 0377-8401 doi: https://doi.org/10.1016/j.anifeedsci.2012.05.004

R

Rooks, D. J., Libberton, B., Woodward, M. J., Allison, H. E. and McCarthy, A. J. (2012) Development and application of a method for the purification of free shigatoxigenic bacteriophage from environmental samples. Journal of Microbiological Methods, 91 (2). pp. 240-245. ISSN 0167-7012 doi: https://doi.org/10.1016/j.mimet.2012.08.017

S

Stringano, E., Hayot Carbonero, C., Smith, L. M.J., Brown, R. H. and Mueller-Harvey, I. (2012) Proanthocyanidin diversity in the EU 'HealthyHay' sainfoin (onobrychis viciifolia) germplasm collection. Phytochemistry, 77 . pp. 197-208. ISSN 0031-9422 doi: https://doi.org/10.1016/j.phytochem.2012.01.013

Sánchez-Patán, F., Cueva, C., Monagas, M., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Quintanilla-López, J., Lebrón-Aguilar, R., Martín-Álvarez, P., Moreno-Arribas, M. and Bartolomé, B. (2012) In vitro fermentation of a red wine extract by human gut microbiota: changes in microbial groups and formation of phenolic metabolites. Journal of Agricultural and Food Chemistry, 60 (9). pp. 2136-2147. ISSN 0021-8561 doi: https://doi.org/10.1021/jf2040115

Sánchez-Patán, F., Cueva, C., Monagas, M., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Martín-Álvarez, P. J., Moreno-Arribas, M. V. and Bartolomé, B. (2012) Gut microbial catabolism of grape seed flavan-3-ols by human faecal microbiota. Targetted analysis of precursor compounds, intermediate metabolites and end-products. Food Chemistry, 131 (1). pp. 337-347. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2011.08.011

T

Tejero, S., Rowland, I. R., Rastall, R. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2012) Prebiotics and probiotics as modulators of the gut microbiota. In: Ross, C. A., Caballero, B., Cousins, R. J., Tucker, K. L. and Ziegler, T. R. (eds.) Modern Nutrition in Health and Disease. Lippincott Williams & Wilkins. ISBN 9781605474618

Toward, R. E., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2012) Immunosenescence and the gut microbiota: the role of probiotics and prebiotics. Nutrition and Aging, 1 (3-4). pp. 167-180. ISSN 1879-7725 doi: https://doi.org/10.3233/NUA-130014

Toward, R., Montandon, S., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2012) Effect of prebiotics on the human gut microbiota of elderly persons. Gut Microbes, 3 (1). pp. 57-60. ISSN 1949-0984 doi: https://doi.org/10.4161/gmic.19411

W

Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Lu, C., Trogh, I., Arnaut, F. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2012) A randomised, double-blind, placebo controlled cross-over study to determine the gastrointestinal effects of consumption of arabinoxylanoligosaccharides enriched bread in healthy volunteers. Nutrition Journal, 11 (1). 36. ISSN 1475-2891 doi: https://doi.org/10.1186/1475-2891-11-36

Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J. E. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2012) Prebiotics for gut microbiota modulation through diet. In: Rosenberg, E., DeLong, E. F., Lory, S. and Stackebrandt, E. (eds.) The Prokaryotes: A Handbook on the Biology of Bacteria 4th Edition. Springer, pp. 25-43, Volume 5 (Human Microbiology). ISBN 9780387334882

Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, van deb Heauvel, E. G.H.M., Kosters, M. H. W., Rastall, R. A., Tuohy, K. M. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2012) A randomised crossover study investigating the effects of galacto-oligosaccharides on the faecal microbiota in men and women over 50 years of age. British Journal of Nutrition, 107 (10). pp. 1466-1475. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114511004697

Wu, G., Erlicht, R., Mafura, M., Stokes, M., Smith, N., Pritchard, G. C. and Woodward, M. J. (2012) Escherichia coli isolates from extraintestinal organs of livestock animals harbour diverse virulence genes and belong to multiple genetic lineages. Veterinary Microbiology, 160 (1-2). pp. 197-206. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2012.05.029