A

Anjum, M.F., Jones, E., Morrison, V., Tozzoli, R., Morabito, S., Toth, I., Nagy, B., Smith, G., Aspan, A., Nielsen, E. M., Fach, P., Echeita, A., Woodward, M. and La Ragione, R. M. (2014) Use of virulence determinants and seropathotypes to distinguish high- and low-risk Escherichia coli O157 and non-O157 isolates from Europe. Epidemiology and Infection, 142 (5). pp. 1019-1028. ISSN 1469-4409 doi: 10.1017/S0950268813001635

B

Bodinham, C. L., Smith, L., Thomas, E. L., Bell, J. D., Swann, J. R., Costabile, A., Russell-Jones, D., Umpleby, A. M. and Robertson, M. D. (2014) Efficacy of increased resistant starch consumption in human type 2 diabetes. Endocrine connections, 3 (2). pp. 75-84. ISSN 2049-3614 doi: 10.1530/EC-14-0036

Bruck, W. M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Bruck, T. B. (2014) The effect of proteolysis on the induction of cell death by monomeric alpha-lactalbumin. Biochimie, 97. pp. 138-143. ISSN 0300-9084 doi: 10.1016/j.biochi.2013.10.007

C

Chapman, C. M. C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Rowland, I. (2014) Effects of single- and multi-strain probiotics on biofilm formation and in vitro adhesion to bladder cells by urinary tract pathogens. Anaerobe, 27. pp. 71-76. ISSN 1075-9964 doi: 10.1016/j.anaerobe.2014.02.001

Chattaway, M. A., Jenkins, C., Ciesielczuk, H., Day, M., DoNascimento, V., Rodríguez, I., van Essen-Zandbergen, A., Schink, A.-K., Wu, G., Threlfall, J., Woodward, M. J., Coldham, N., Kadlec, K., Schwarz, S., Dierikx, C., Guerra, B., Helmuth, R., Mevius, D., Woodford, N. and Wain, J. (2014) Evidence of evolving extraintestinal enteroaggregative Escherichia coli ST38 clone. Emerging Infectious Diseases, 20 (11). pp. 1935-1937. ISSN 1080-6040 doi: 10.3201/eid2011.131845

Childs, C. E., Roytio, H., Alhoniemi, E., Fekete, A. A., Forssten, S. D., Hudjec, N., Lim, Y. N., Steger, C. J., Yaqoob, P. ORCID: https://orcid.org/0000-0002-6716-7599, Tuohy, K. M., Rastall, R. A., Ouwehand, A. C. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2014) Xylo-oligosaccharides alone or in synbiotic combination with Bifidobacterium animalis subsp. lactis induce bifidogenesis and modulate markers of immune function in healthy adults: a double-blind, placebo-controlled, randomised, factorial cross-over study. British Journal of Nutrition, 111 (11). pp. 1945-1956. ISSN 0007-1145 doi: 10.1017/S0007114513004261

Claus, S. P. (2014) Development of personalised functional foods needs metabolic profiling. Current Opinion in Clinical Nutrition and Metabolic Care, 17 (6). pp. 567-573. ISSN 1363-1950 doi: 10.1097/MCO.0000000000000107

Claus, S. P. (2014) Mammalian-microbial cometabolism of L-Carnitine in the context of atherosclerosis. Cell Metabolism, 20 (5). pp. 699-700. ISSN 1550-4131 doi: 10.1016/j.cmet.2014.10.014

D

Daud, N. M., Ismail, N. A., Thomas, E. L., Fitzpatrick, J. A., Bell, J. D., Swann, J. R., Costabile, A., Childs, C. E., Pedersen, C., Goldstone, A. P. and Frost, G. S. (2014) The impact of oligofructose on stimulation of gut hormones, appetite regulation, and adiposity. Obesity, 22 (6). pp. 1430-1438. ISSN 1930-739X doi: 10.1002/oby.20754

E

Eid, N., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Costabile, A., Kuhnle, G. G. C. ORCID: https://orcid.org/0000-0002-8081-8931 and Spencer, J. P. E. ORCID: https://orcid.org/0000-0003-2931-7274 (2014) Polyphenols, glucosinolates, dietary fibre and colon cancer: Understanding the potential of specific types of fruit and vegetables to reduce bowel cancer progression. Nutrition and Aging, 2 (1). pp. 45-67. ISSN 1879-7725 doi: 10.3233/NUA-130029

F

F`eehily, C., Finnerty, A., Hill, C., Casey, P. G., Gahan, C. G. M., O’Byrne,, C. P. and Karatzas, K. A. G. (2014) Divergent evolution of the activity and regulation of the glutamate decarboxylase systems in Listeria monocytogenes EGD-e and 10403S : roles in virulence and acid tolerance. PLoS ONE, 9 (11). e112649. ISSN 1932-6203 doi: 10.1371/journal.pone.0112649

Freire-Martín, I., AbuOun, M., Reichel, R., La Ragione, R. M. and Woodward, M. J. (2014) Sequence analysis of a CTX-M-1 IncI1 plasmid found in Salmonella enterica 4,5,12,i:-, Escherichia coli and Klebsiella pneumoniae on a single UK pig farm. Journal of Antimicrobial Chemotherapy, 69 (8). pp. 2098-2101. ISSN 0305-7453 doi: 10.1093/jac/dku098

Frost, G. S., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J. R., Psichas, A., Costabile, A., Johnson, L. P., Sponheimer, M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Barraclough, T. G. (2014) Impacts of plant-based foods in ancestral hominin diets on the metabolism and function of gut microbiota in vitro. mBio, 5. e00853-14. ISSN 2150-7511 doi: 10.1128/mbio.00853-14

Frost, G., Sleeth, M. L., Sahuri-Arisoylu, M., Lizarbe, B., Cerdan, S., Brody, L., Anastasovska, J., Ghourab, S., Hankir, M., Zhang, S., Carling, D., Swann, J. R., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Viardot, A., Morrison, D., Thomas, E. L. and Bell, J. D. (2014) The short-chain fatty acid acetate reduces appetite via a central homeostatic mechanism. Nature Communications, 5 (3611). ISSN 2041-1723 doi: 10.1038/ncomms4611

G

Gan, X. T., Ettinger, G., Huang, C. X., Burton, J. P., Haist, J. V., Rajapurohitam, V., Sidaway, J. E., Martin, G., Gloor, G. B., Swann, J. R., Reid, G. and Karmazyn, M. (2014) Probiotic administration attenuates myocardial hypertrophy and heart failure following myocardial infarction in the rat. Circulation : heart failure, 7 (3). pp. 491-499. ISSN 1941-3289 doi: 10.1161/​CIRCHEARTFAILURE.113.000978

Guerra-Ordaz, A. A., González-Ortiz, G., La Ragione, R. M., Woodward, M., Collins, J. W., Pérez, J. F. and Martín-Orúe, S. M. (2014) Lactulose and Lactobacillus plantarum, a potential complementary synbiotic to control postweaning colibacillosis in piglets. Applied and Environmental Microbiology, 80 (16). pp. 4879-4886. ISSN 1098-5336 doi: 10.1128/AEM.00770-14

H

Hartman, H. B., Fell, D. A., Rossell, S., Jensen, P. R., Woodward, M. J., Thorndahl, L., Jelsbak, L., Olsen, J. E., Raghunathan, A., Daefler, S. and Poolman, M. G. (2014) Identification of potential drug targets in Salmonella Typhimurium using metabolic modelling and experimental validation. Microbiology, 160 (6). pp. 1252-1266. ISSN 1350-0872 doi: 10.1099/mic.0.076091-0

Hayward, M. R., AbuOan, M., La Ragione, R. M., Tworschevska, M., Cooley, W., Everest, D. J., Petrovska, L., Jansen, V. A. A. and Woodward, M. (2014) SPI-23 of S.Derby: role in adherence and invasion of porcine tissues. PLoS ONE, 9 (9). e107857. ISSN 1932-6203 doi: 10.1371/journal.pone.0107857

Hill, C., Guarner, F., Reid, G., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Merenstein, D. J., Pot, B., Morelli, L., Canani, R. B., Flint, H., Salminen, S., Calder, P. C. and Sanders, M. E. (2014) Expert consensus document: the International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic. Nature Reviews in Gastroenterology and Hepatology, 11 (8). pp. 506-514. ISSN 1759-5045 doi: 10.1038/nrgastro.2014.66

Hoyles, L., McCartney, A. L., Neve, H., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Sanderson, J. D., Heller, K. J. and van Sinderen, D. (2014) Characterization of virus-like particles associated with the human faecal and caecal microbiota. Research in Microbiology, 165 (10). pp. 803-812. ISSN 0923-2508 doi: 10.1016/j.resmic.2014.10.006

K

Khalil, N., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Tuohy, K. M. and Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686 (2014) In vitro batch cultures of gut microbiota from healthy and ulcerative colitis (UC) subjects suggest that sulphate-reducing bacteria levels are raised in UC and by a protein-rich diet. International Journal of Food Science and Nutrition, 65 (1). pp. 79-88. ISSN 1465-3478 doi: 10.3109/09637486.2013.825700

Klootwijk, E. D., Reichold, M., Helip-Wooley, A., Tolaymat, A., Broeker, C., Robinette, S. L., Reinders, J., Peindl, D., Renner, K., Eberhart, K., Assmann, N., Oefner, P. J., Dettmer, K., Sterner, C., Schroeder, J., Zorger, N., Witzgall, R., Reinhold, S. W., Stanescu, H. C., Bockenhauer, D., Jaureguiberry, G., Courtneidge, H., Hall, A. M., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Holmes, E., Nicholson, J. K., O'Brien, K., Bernardini, I., Krasnewich, D., Arcos-Burgos, M., Izumi, Y., Nonoguchi, H., Jia, Y., Reddy, J. K., Ilyas, M., Unwin, R. J., Gahl, W. A., Warth, R. and Kleta, R. (2014) Mistargeting of peroxisomal EHHADH and inherited renal Fanconi's syndrome. The New England Journal of Medicine, 370 (2). pp. 129-138. ISSN 1533-4406 doi: 10.1056/NEJMoa1307581

Kok, M. G.M., Swann, J. R., Wilson, I. D., Somsen, G. W. and de Jong, G. J. (2014) Hydrophilic interaction chromatography–mass spectrometry for anionic metabolic profiling of urine from antibiotic-treated rats. Journal of Pharmaceutical and Biomedical Analysis, 92. pp. 98-104. ISSN 0731-7085 doi: 10.1016/j.jpba.2014.01.008

L

Ladep, N. G., Dona, A. C., Lewis, M. R., Crossey, M. M. E., Lemoine, M., Okeke, E., Shimakawa, Y., Duguru, M., Njai, H. F., Fye, H. K. S., Taal, M., Chetwood, J., Kasstan, B., Khan, S. A., Garside, D. A., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Thillainayagam, A. V., Banwat, E., Thursz, M. R., Nicholson, J. K., Njie, R., Holmes, E. and Taylor-Robinson, S. D. (2014) Discovery and validation of urinary metabotypes for the diagnosis of hepatocellular carcinoma in West Africans. Hepatology, 60 (4). pp. 1291-1301. ISSN 1527-3350 doi: 10.1002/hep.27264

Lamichhane, S., Yde, C. C., Forssten, S., Ouwehand, A. C., Saarinen, M., Jensen, H. M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A., Fava, F. and Bertram, H. C. (2014) Impact of dietary polydextrose fiber on the human gut metabolome. Journal of Agricultural and Food Chemistry, 62 (40). pp. 9944-9951. ISSN 0021-8561 doi: 10.1021/jf5031218

Lees, H., Swann, J., Poucher, S. M., Nicholson, J. K., Holmes, E., Wilson, I. D. and Marchesi, J. R. (2014) Age and microenvironment outweigh genetic influence on the Zucker rat microbiome. PLoS ONE, 9 (9). e100916. ISSN 1932-6203 doi: 10.1371/journal.pone.0100916

Likotrafiti, E., Tuohy, K. M., Rastall, B. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2014) An in vitro study of the effect of probiotics, prebiotics and synbiotics on the elderly faecal microbiota. Anaerobe, 27. pp. 50-55. ISSN 1075-9964 doi: 10.1016/j.anaerobe.2014.03.009

M

Mappley, L. J., La Ragione, R. M. and Woodward, M. J. (2014) Brachyspira and its role in avian intestinal spirochaetosis. Veterinary Microbiology, 168 (3-4). pp. 245-260. ISSN 0378-1135 doi: 10.1016/j.vetmic.2013.11.019

McArdle, S. E. B., Pockley, A. G., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Rees, R. C. (2014) Prostate cancer: important steps and considerations in the design of therapeutic vaccines. Oncoimmunology, 3 (3). e28049. ISSN 2162-402X doi: 10.4161/onci.28049

McNeece, G., Naughton, V., Woodward, M. J., Dooley, J. S. G. and Naughton, P. J. (2014) Array based detection of antibiotic resistance genes in Gram negative bacteria isolated from retail poultry meat in the UK and Ireland. International Journal of Food Microbiology, 179. pp. 24-32. ISSN 0168-1605 doi: 10.1016/j.ijfoodmicro.2014.03.019

N

Nyangale, E. P., Farmer, S., Keller, D., Chernoff, D. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2014) Effect of prebiotics on the fecal microbiota of elderly volunteers after dietary supplementation of Bacillus coagulans GBI-30, 6086. Anaerobe, 30. pp. 75-81. ISSN 1075-9964 doi: 10.1016/j.anaerobe.2014.09.002

S

Sanders, M. E., Lenoir-Wijnkoop, I., Salminen, S., Merenstein, D., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Petschow, B. W., Tancredi, D. J., Jacques, P. and Pot, B. (2014) Probiotics and prebiotics: prospects for public health and nutritional recommendations. Annals of the New York Academy of Sciences, 1309. pp. 19-29. ISSN 1749-6632 doi: 10.1111/nyas.12377

Sarbini, S. R., Deaville, E. R., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Rastall, R. A. (2014) Potential of novel dextran oligosaccharides as prebiotics for obesity management through in vitro experimentation. British Journal of Nutrition, 112 (8). pp. 1303-1314. ISSN 0007-1145 doi: 10.1017/S0007114514002177

Stephens, K., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2014) Gastrointestinal microbiota. In: Lomer, M. (ed.) Advanced nutrition and dietetics in gastroenterology. Wiley-Blackwell, Chichester, pp. 41-47. ISBN 9780470671320 doi: 10.1002/9781118872796.ch1.8

Swann, J. R. and Claus, S. P. (2014) Nutrimetabonomics: nutritional applications of metabolic profiling. Science Progress, 97 (1). pp. 41-47. ISSN 0036-8504 doi: 10.3184/003685014X13898807933527

Swann, J. R., Reid, G., Nduti, N., Sybesma, W., Kort, R., Kollmann, T. R., Adam, R., Boga, H., Brown, E. M., Einerhand, A., El-Nezami, H., Gloor, G. B., Kavere, I. I., Lindahl, J., Manges, A., Mamo, W., Martin, R., McMillan, A., Obiero, J., Ochieng, P. A., Onyango, A., Rulisa, S., Salminen, E., Salminen, S., Sije, A., van Treuren, W., Waweru, D. and Kemp, S. J. (2014) Harnessing microbiome and probiotic research in sub-Saharan Africa: recommendations from an African workshop. Microbiome, 2 (12). pp. 1-13. ISSN 2049-2618 doi: 10.1186/2049-2618-2-12

T

Tang, Y., Gielbert, A., Underwood, A., Woodward, M. J. and Petrovska, L. (2014) Metaproteomics analysis reveals the adaptation process for the chicken gut microbiota. Applied and Environmental Microbiology, 80 (2). pp. 478-485. ISSN 0099-2240 doi: 10.1128/AEM.02472-13