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Abbas, M., Hayirli, Z., Drakesmith, H., Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686 and Lewis, M. C. (2022) Effects of iron deficiency and iron supplementation at the host-microbiota interface: could a piglet model unravel complexities of the underlying mechanisms? Frontiers in Nutrition, 9. 927754. ISSN 2296-861X doi: https://doi.org/10.3389/fnut.2022.927754

Abdallah, A. I., Commander, N. J., Woodward, M. J., Spencer, S., Hart, C. A. and Winstanley, C. (2003) Type III secretion homologs are present in Brucella melitensis, B-ovis, and B-suis biovars 1, 2, and 3. Current Microbiology, 46 (4). pp. 241-245. ISSN 0343-8651 doi: https://doi.org/10.1007/s00284-002-3789-3

Abdullah, W. Z. W., Mackey, B. M. and Karatzas, K.-A. G. (2017) Biofilm formation of Salmonella enterica and the central role of RpoS sigma factor in stress resistance. Malaysian Applied Biology, 46 (3). pp. 59-65. ISSN 0126-8643

Abdullah, W. Z. W., Mackey, B. M. and Karatzas, K.-A. G. (2017) Determination of the relative effects of temperature, pH and water activity in food systems: a meta-analysis study. Malaysian Applied Biology, 46 (3). pp. 67-70. ISSN 0126-8643

Abdullah, W. Z. W., Mackey, B. M. and Karatzas, K.-A. G. (2018) High phenotypic variability among representative strains of common Salmonella enterica serovars with possible implications for food safety. Journal of Food Protection, 81 (1). pp. 93-104. ISSN 0362-028X doi: https://doi.org/10.4315/0362-028x.jfp-17-190

Abecia, L., Hoyles, L., Khoo, C., Frantz, N. and McCartney, A. L. (2010) Effects of a novel galactooligosaccharide on the faecal microbiota of healthy and inflammatory bowel disease cats during a randomized, double-blind, cross-over feeding study. International Journal of Probiotics and Prebiotics, 5 (2). pp. 61-68. ISSN 1555-1431

Abecia, L., McCartney, A. L. and Klinder, A. (2010) In vitro investigation of the effects of tryptophan fermentation products on immune response. Proceedings of the Nutrition Society, 69 (OCE3). E262. ISSN 0029-6651 doi: https://doi.org/10.1017/S0029665110000510

Abram, F., Starr, E., Karatzas, K.-A. G., Wasowska-Matlawska, K., Boyd, A., Wiedmann, M., Boor, K. J., Connally, D. and O'Bryne, C. P. (2008) Identification of components of the Sigma B Regulon in Listeria monocytogenes that contribute to acid and salt tolerance. Applied and Environmental Microbiology, 74 (22). pp. 6848-6858. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.00442-08

Abram, F., Su, W.-L. , Wiedmann, M., Boor, K. J., Coote, P., Botting, C. , Karatzas, K.-A. and O'Byrne, C. P. (2008) Proteomic analyses of a Listeria monocytogenes mutant lacking σB identify new components of the σB regulon and highlight a role for σB in the utilization of glycerol. Applied and Environmental Microbiology, 74 (3). pp. 594-604. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.01921-07

AbuOun, M., Suthers, P. F., Jones, G. I., Carter, B. R., Saunders, M. P., Maranas, C. D., Woodward, M. J. and Anjum, M. F. (2009) Genome scale reconstruction of a Salmonella metabolic model comparison of similarity and differences with a commensal Escherichia coli strain. The Journal of Biological Chemistry, 284 (43). pp. 29480-29488. ISSN 1083-351X doi: https://doi.org/10.1074/jbc.M109.005868

Abukhabta, S., Khalil Ghawi, S., Karatzas, K. A., Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402, McDougall, G., Allwood, J. W., Verrall, S., Lavery, S., Latimer, C., Pourshahidi, L. K., Lawther, R., O’Connor, G., Rowland, I. and Gill, C. I. R. (2020) Sulforaphane-enriched extracts from glucoraphanin-rich broccoli exert antimicrobial activity against gut pathogens in vitro and innovative cooking methods increase in vivo intestinal delivery of sulforaphane. European Journal of Nutrition. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-020-02322-0

Aktan, I., Carter, B., Wilking, H., La Ragione, R. M., Wieler, L., Woodward, M. J. and Anjum, M. F. (2007) Influence of geographical origin, host animal and stx gene on the virulence characteristics of Escherichia coli O26 strains. Journal of Medical Microbiology, 56 (11). pp. 1431-1439. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.47311-0

Aktan, I., Carter, B., Wilking, H., La Ragione, R. M., Woodward, M. J., Wieler, L. H. and Anjum, M. F. (2007) Escherichia coli O26 strains: influence of geography, host animal and stx gene on virulence characteristics. International Journal of Medical Microbiology, 297. p. 54. ISSN 1438-4221

Aktan, I., La Ragione, R. M. and Woodward, M. J. (2007) Colonization, persistence, and tissue tropism of Escherichia coli O26 in conventionally reared weaned lambs. Applied and Environmental Microbiology, 73 (3). pp. 691-698. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.01879-06

Aktan, I., La Ragione, R. M., Pritchard, G. C. and Woodward, M. J. (2007) Prevalence of attaching and effacing Escherichia coli serogroup 0103 in orphan lambs on an open farm in eastern England. Veterinary Record, 161 (11). pp. 386-388. ISSN 0042-4900 doi: https://doi.org/10.1136/vr.161.11.386

Aktan, I., Sprigings, K. A., La Ragione, R. M., Faulkner, L. M., Paiba, G. A. and Woodward, M. J. (2004) Characterisation of attaching-effacing Escherichia coli isolated from animals at slaughter in England and Wales. Veterinary Microbiology, 102 (1-2). pp. 43-53. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2004.04.013

Aktan, I., Woodward, M. and La Ragione, R. M. (2009) Interaction between attaching-effacing Escherichia coli O26:K60 and O157:H7 in young lambs. Research in Veterinary Science, 87 (1). pp. 13-15. ISSN 0034-5288 doi: https://doi.org/10.1016/j.rvsc.2008.11.006

Al-Zeyara, S. A., Jarvis, B. and Mackey, B. M. (2011) The inhibitory effect of natural microflora of food on growth of Listeria monocytogenes in enrichment broths. International Journal of Food Microbiology, 145 (1). pp. 98-105. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2010.11.036

Alarifi, S., Bell, A. and Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635 (2018) In vitro fermentation of gum acacia - impact on the faecal microbiota. International Journal of Food Sciences and Nutrition, 69 (6). pp. 696-704. ISSN 1465-3478 doi: https://doi.org/10.1080/09637486.2017.1404970

Alemán, J. O., Bokulich, N. A., Swann, J. R., Walker, J. M., De Rosa, J. C., Battaglia, T., Costabile, A., Pechlivanis, A., Liang, Y., Breslow, J. L., Blaser, M. J. and Holt, P. R. (2018) Fecal microbiota and bile acid interactions with systemic and adipose tissue metabolism in diet-induced weight loss of obese postmenopausal women. Journal of Translational Medicine, 16 (1). 244. ISSN 1479-5876 doi: https://doi.org/10.1186/s12967-018-1619-z

Alhinai, E. A., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Commane, D. M. (2019) The role of the gut microbiota in colorectal cancer causation. International Journal of Molecular Sciences, 20 (21). 5295. ISSN 1422-0067 doi: https://doi.org/10.3390/ijms20215295

Allen-Vercoe, E. and Woodward, M. J. (1999) Colonisation of the chicken caecum by afimbriate and aflagellate derivatives of Salmonella enterica serotype Enteritidis. Veterinary Microbiology, 69 (4). pp. 265-275. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(99)00114-5

Allen-Vercoe, E. and Woodward, M. J. (1999) The role of flagella, but not fimbriae, in the adherence of Salmonella enterica serotype Enteritidis to chick gut explant. Journal of Medical Microbiology, 48 (8). pp. 771-780. ISSN 0022-2615

Allen-Vercoe, E., Collighan, R. and Woodward, M. J. (1998) The variant rpoS allele of S-enteritidis strain 27655R does not affect virulence in a chick model nor constitutive curliation but does generate a cold-sensitive phenotype. Fems Microbiology Letters, 167 (2). pp. 245-253. ISSN 0378-1097 doi: https://doi.org/10.1016/s0378-1097(98)00396-6

Allen-Vercoe, E., Dibb-Fuller, M., Thorns, C. J. and Woodward, M. J. (1997) SEF17 fimbriae are essential for the convoluted colonial morphology of Salmonella enteritidis. Fems Microbiology Letters, 153 (1). pp. 33-42. ISSN 0378-1097 doi: https://doi.org/10.1016/s0378-1097(97)00219-x

Allen-Vercoe, E., Sayers, A. R. and Woodward, M. J. (1999) Virulence of Salmonella enterica serotype Enteritidis aflagellate and afimbriate mutants in a day-old chick model. Epidemiology and Infection, 122 (3). pp. 395-402. ISSN 0950-2688 doi: https://doi.org/10.1017/s0950268899002460

Alqurashi, R. M., Alarifi, S. N., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Costabile, A. F., Rowland, I. R. and Commane, D. M. (2017) In vitro approaches to assess the effects of açai (Euterpe oleracea) digestion on polyphenol availability and the subsequent impact on the faecal microbiota. Food Chemistry, 234. pp. 190-198. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2017.04.164

Ames, J.M., Wynne, A., Hofman, A., Plos, S. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (1999) The effect of a model melanoidin mixture in faecal bacterial populations in vitro. British Journal of Nutrition (82). pp. 489-495.

Amiot, A., Dona, A. C., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Tournigand, C., Baumgaertner, I., Lebaleur, Y., Sobhani, I. and Holmes, E. (2015) 1H NMR spectroscopy of fecal extracts enables detection of advanced colorectal neoplasia. Journal of Proteome Research, 14 (9). pp. 3871-3881. ISSN 1535-3907 doi: https://doi.org/10.1021/acs.jproteome.5b00277

Anastasovska, J., Arora, T., Sanchez Canon, G. J., Parkinson, J. R. C., Tuohy, K., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Nadkarni, N. A., So, P. W., Thomas, E. L., Hankir, M. K., Van Loo, J., Modi, N., Bell, J. D. and Frost, G. (2012) Fermentable carbohydrate alters hypothalamic neuronal activity and protects against the obesogenic environment. Obesity, 20. pp. 1016-1023. ISSN 1930-739X doi: https://doi.org/10.1038/oby.2012.6

Andreas, N. J., Hyde, M. J., Gomez‐Romero, M., Lopez-Gonzalvez, M. A., Villaseñor, A., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Barbas, C., Modi, N., Holmes, E. and Garcia-Perez, I. (2015) Multiplatform characterization of dynamic changes in breast milk during lactation. Electrophoresis, 36 (18). pp. 2269-2285. ISSN 0173-0835 doi: https://doi.org/10.1002/elps.201500011

Anium, M. F., Mafura, M., Slickers, P., Ballmer, K., Kuhnert, P., Woodward, M. J. and Ehricht, R. (2007) Pathotyping Escherichia coli by using miniaturized DNA microarrays. Applied and Environmental Microbiology, 73 (17). pp. 5692-5697. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.00419-07

Anjum, M. F., Choudhary, S., Morrison, V., Snow, L. C., Mafura, M., Slickers, P., Ehricht, R. and Woodward, M. J. (2011) Identifying antimicrobial resistance genes of human clinical relevance within Salmonella isolated from food animals in Great Britain. Journal of Antimicrobial Chemotherapy, 66 (3). pp. 550-559. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkq498

Anjum, M. F., Lucchini, S., Thompson, A., Hinton, J. C. D. and Woodward, M. J. (2003) Comparative genomic indexing reveals the phylogenomics of Escherichia coli pathogens. Infection and Immunity, 71 (8). pp. 4674-4683. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.71.8.4674-4683.2003

Anjum, M. F., Marooney, C., Fookes, M., Baker, S., Dougan, G., Ivens, A. and Woodward, M. J. (2005) Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray. Infection and Immunity, 73 (12). pp. 7894-7905. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.73.12.7894-7905.2005

Anjum, M. F., Tucker, J. D., Sprigings, K. A., Woodward, M. J. and Ehricht, R. (2006) Use of miniaturized protein arrays for Escherichia coli O serotyping. Clinical and Vaccine Immunology, 13 (5). pp. 561-567. ISSN 1556-679X doi: https://doi.org/10.1128/cvi.13.5.561-567.2006

Anjum, M.F., Jones, E., Morrison, V., Tozzoli, R., Morabito, S., Toth, I., Nagy, B., Smith, G., Aspan, A., Nielsen, E. M., Fach, P., Echeita, A., Woodward, M. and La Ragione, R. M. (2014) Use of virulence determinants and seropathotypes to distinguish high- and low-risk Escherichia coli O157 and non-O157 isolates from Europe. Epidemiology and Infection, 142 (5). pp. 1019-1028. ISSN 1469-4409 doi: https://doi.org/10.1017/S0950268813001635

Apostolou, E., Pelto, L., Kirjavainen, P.V., Isolauri, E., Salminen, S.J. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2001) Differences in the gut bacterial flora of healthy and milk-hypersensitive adults, as measured by fluorescence in situ hybridization. FEMS Immunology and Medical Microbiology, 30 (3). pp. 217-221. ISSN 0928-8244 doi: https://doi.org/10.1016/S0928-8244(01)00222-X

Arora, T., Loo, R. L., Anastasovska, J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Tuohy, K. M., Sharma, R. K., Swann, J. R., Deaville, E. R., Sleeth, M. J., Thomas, E. L., Holmes, E., Bell, J. D. and Frost, G. (2012) Differential effects of two fermentable carbohydrates on central appetite regulation and body composition. PLoS ONE, 7. e43263. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0043263

Arroyo, C., Cebrián, G., Mackey, B. M., Condón, S. and Pagán, R. (2011) Environmental factors influencing the inactivation of Cronobacter sakazakii by high hydrostatic pressure. International Journal of Food Microbiology, 147 (2). pp. 134-143. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2011.03.018

Aspinall, S. R. ORCID: https://orcid.org/0000-0002-1333-1664, Parker, J. K. ORCID: https://orcid.org/0000-0003-4121-5481 and Khutoryanskiy, V. V. ORCID: https://orcid.org/0000-0002-7221-2630 (2021) Role of mucoadhesive polymers in retention of toothpaste in the oral cavity. Colloids and Surfaces B: Biointerfaces, 208. 112104. ISSN 0927-7765 doi: https://doi.org/10.1016/j.colsurfb.2021.112104

Attwood, R. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2000) Aspects of probiotic use in preventative medicine. Chemist and Druggist, August. pp. 18-20.

Avery, S. M., Liebana, E., Reid, C. A., Woodward, M. J. and Buncic, S. (2002) Combined use of two genetic fingerprinting methods, pulsed-field gel electrophoresis and ribotyping, for characterization of Escherichia coli O157 isolates from food animals, retail meats, and cases of human disease. Journal of Clinical Microbiology, 40 (8). pp. 2806-2812. ISSN 0095-1137 doi: https://doi.org/10.1128/jcm.40.8.2806-2812.2002

Ayling, R. D., Woodward, M. J., Evans, S. and Newell, D. G. (1996) Restriction fragment length polymorphism of polymerase chain reaction products applied to the differentiation of poultry campylobacters for epidemiological investigations. Research in Veterinary Science, 60 (2). pp. 168-172. ISSN 0034-5288 doi: https://doi.org/10.1016/s0034-5288(96)90013-2

Bailey, A. M., Constantinidou, C., Ivens, A., Garvey, M. I., Webber, M. A., Coldham, N., Hobman, J. L., Wain, J., Woodward, M. J. and Piddock, L. J. V. (2009) Exposure of Escherichia coli and Salmonella enterica serovar Typhimurium to triclosan induces a species-specific response, including drug detoxification. Journal of Antimicrobial Chemotherapy, 64 (5). pp. 973-985. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkp320

Bailey, M., Christoforidou, Z. and Lewis, M. (2012) Evolution of immune systems: specificity and autoreactivity. Autoimmunity Reviews, 12 (6). pp. 643-647. ISSN 1568-9972 doi: https://doi.org/10.1016/j.autrev.2012.10.007

Bailey, M., Christoforidou, Z. and Lewis, M. C. (2012) The evolutionary basis for differences between the immune systems of man, mouse, pig and ruminants. Veterinary Immunology and Immunopathology, 152 (1-2). pp. 13-19. ISSN 0165-2427 doi: https://doi.org/10.1016/j.vetimm.2012.09.022

Baker, L., Lanz, B., Andreola, F., Ampuero, J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Holmes, E. and Deutz, N. (2016) New technologies – new insights into the pathogenesis of hepatic encephalopathy. Metabolic Brain Disease, 31 (6). pp. 1259-1267. ISSN 1573-7365 doi: https://doi.org/10.1007/s11011-016-9906-y

Barbosa, T. M., Serra, C. R., La Ragione, R. M., Woodward, M. J. and Henriques, A. O. (2005) Screening for Bacillus isolates in the broiler gastrointestinal tract. Applied and Environmental Microbiology, 71 (2). pp. 968-978. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.71.2.968-978.2005

Barlow, A. M., Wales, A. D., Burch, A. A., La Ragione, R. M., Woodward, M. J. and Pearson, G. R. (2004) Attaching and effacing lesions in the intestines of an adult goat associated with natural infection with Escherichia coli O145. Veterinary Record, 155 (25). pp. 807-808. ISSN 0042-4900

Barnes, R. H. and Karatzas, K. A. G. (2020) Investigation into the antimicrobial activity of fumarate against Listeria monocytogenes and its mode of action under acidic conditions. International Journal of Food Microbiology, 324. 108614. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2020.108614

Basson, A. R. and Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 (2017) Metabolic phenotyping for understanding the gut microbiome and host metabolic interplay. Emerging Topics in Life Sciences, 1 (4). pp. 325-332. ISSN 2397-8562 doi: https://doi.org/10.1042/ETLS20170079

Batchelor, M., Hopkins, K. L., Liebana, E., Slickers, P., Ehricht, R., Mafura, M., Aarestrup, F., Mevius, D., Clifton-Hadley, F. A., Woodward, M. J., Davies, R. H., Threlfall, E. J. and Anjum, M. F. (2008) Development of a miniaturised microarray-based assay for the rapid identification of antimicrobial resistance genes in Gram-negative bacteria. International Journal of Antimicrobial Agents, 31 (5). pp. 440-451. ISSN 0924-8579 doi: https://doi.org/10.1016/j.ijantimicag.2007.11.017

Beards, E., Tuohy, K. M. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2010) Bacterial, SCFA and gas profiles of a range of food ingredients following in vitro fermentation by human colonic microbiota. Anaerobe, 16 (4). pp. 420-425. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2010.05.006

Beards, E., Tuohy, K. M. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2010) A human volunteer study to assess the impact of confectionery sweeteners on the gut microbiota composition. British Journal of Nutrition, 104 (5). pp. 701-708. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114510001078

Beaumont, M., Portune, K. J., Steuer, N., Lan, A., Cerrudo, V., Audebert, M., Dumont, F., Mancano, G., Khodorova, N., Andriamihaja, M., Airinei, G., Tomé, D., Benamouzig, R., Davilla, A.-M., Claus, S. P., Sanz, Y. and Blachier, F. (2017) Quantity and source of dietary protein influence metabolite production by gut microbiota and rectal mucosa gene expression: a randomized, parallel, double-blind trial in overweight humans. American Journal of Clinical Nutrition, 106 (4). pp. 1005-1019. ISSN 0002-9165 doi: https://doi.org/10.3945/ajcn.117.158816

Bell, S.A., Steer, T.E. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (1999) Diet, bacteria and bowel cancer. Nutrition and Food Science (4). pp. 187-191.

Bergillos-Meca, T., Costabile, A., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Moreno-Montoro, M., Ruiz-Bravo, A. and Ruiz-López, M. D. (2015) In vitro evaluation of the fermentation properties and potential probiotic activity of Lactobacillus plantarum C4 in batch culture systems. LWT-Food Science and Technology, 60 (1). pp. 420-426. ISSN 0023-6438 doi: https://doi.org/10.1016/j.lwt.2014.08.006

Bernalier, A., Lelait, M., Rochet, V., Grivet, J.P., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and Durand, M. (1996) Acetogenesis from H2 and CO2 by methane and non-methane producing human colonic bacteria. FEMS Microbiology Ecology (19). pp. 193-202.

Best, A., Clifford, D., Crudgington, B., Cooley, W. A., Nunez, A., Carter, B., Weyer, U., Woodward, M. J. and La Ragione, R. M. (2009) Intermittent Escherichia coli O157:H7 colonisation at the terminal rectum mucosa of conventionally-reared lambs. Veterinary Research, 40 (1). 40:09. ISSN 0928-4249 doi: https://doi.org/10.1051/vetres:2008047

Best, A., La Ragione, R. M., Clifford, D., Cooley, W. A., Sayers, A. R. and Woodward, M. J. (2006) A comparison of Shiga-toxin negative Escherichia coli O157 aflagellate and intimin deficient mutants in porcine in vitro and in vivo models of infection. Veterinary Microbiology, 113 (1-2). pp. 63-72. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2005.10.033

Best, A., La Ragione, R. M., Cooley, W. A., O'Connor, C. D., Velge, P. and Woodward, M. J. (2003) Interaction with avian cells and colonisation of specific pathogen free chicks by Shiga-toxin negative Escherichia coli O157:H7 (NCTC 12900). Veterinary Microbiology, 93 (3). pp. 207-222. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(03)00031-2

Best, A., La Ragione, R. M., Sayers, A. R. and Woodward, M. J. (2005) Role for flagella but not intimin in the persistent infection of the gastrointestinal tissues of specific-pathogen-free chicks by Shiga toxin-negative Escherichia coli O157:H7. Infection and Immunity, 73 (3). pp. 1836-1846. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.73.3.1836-1846.2005

Bialonska, D., Ramnani, P., Kasimsetty, S. G., Muntha, K. R., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Ferreira, D. (2010) The influence of pomegranate by-product and punicalagins on selected groups of human intestinal microbiota. International Journal of Food Microbiology, 140 (2-3). pp. 175-182. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2010.03.038

Bienestock, J., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Klaenhammer, T. R., Walker, W. A. and Neish, A. (2013) New insights into probiotic mechanisms: a harvest from functional and metagenomic studies. Gut Microbes, 4 (2). pp. 94-100. ISSN 1949-0984 doi: https://doi.org/10.4161/gmic.23283

Bindels, L. B., Neyrinck, A. M., Claus, S. P., Le Roy, C. I., Grangette, C., Pot, B., Martinez, I., Walter, J., Cani, P. D. and Delzenne, N. M. (2016) Synbiotic approach restores intestinal homeostasis and prolongs survival in leukaemia mice with cachexia. ISME Journal, 10 (6). pp. 1456-1470. ISSN 1751-7370 doi: https://doi.org/10.1038/ismej.2015.209

Bingham, M. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2002) A gut feeling about autism. The Autism File, 10. pp. 25-28.

Blair, J. M. A., La Ragione, R. M., Woodward, M. J. and Piddock, L. J. V. (2009) Periplasmic adaptor protein AcrA has a distinct role in the antibiotic resistance and virulence of Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 64 (5). pp. 965-972. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkp311

Blatchford, P., Bentley-Hewitt, K. L., Stoklosinski, H., McGhie, T., Gearry, R., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and Ansell, J. (2015) In vitro characterisation of the fermentation profile and prebiotic capacity of gold-fleshed kiwifruit. Beneficial Microbes, 6 (6). pp. 829-839. ISSN 1876-2883 doi: https://doi.org/10.3920/BM2015.0006

Blatchford, P., Stoklosinski, H., Eady, S., Wallace, A., Butts, C., Gearry, R., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and Ansell, J. (2017) Consumption of kiwifruit capsules increases Faecalibacterium prausnitzii abundance in functionally constipated individuals: a randomised controlled human trial. Journal of Nutritional Science, 6. e52. ISSN 2048-6790 doi: https://doi.org/10.1017/jns.2017.52

Blatchford, P., Stoklosinski, H., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Gearry, R. and Ansell, J. (2015) Kiwifruit fermentation drives positive gut microbial and metabolic changes irrespective of initial microbiota composition. Bioactive Carbohydrates and Dietary Fibre, 6 (1). pp. 37-45. ISSN 2212-6198 doi: https://doi.org/10.1016/j.bcdf.2015.07.001

Bodinham, C. L., Smith, L., Thomas, E. L., Bell, J. D., Swann, J. R., Costabile, A., Russell-Jones, D., Umpleby, A. M. and Robertson, M. D. (2014) Efficacy of increased resistant starch consumption in human type 2 diabetes. Endocrine connections, 3 (2). pp. 75-84. ISSN 2049-3614 doi: https://doi.org/10.1530/EC-14-0036

Bonnet, R., Suau, A., Dore, J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Collins, M.D. (2002) Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs. International Journal of Systematic and Evolutionary Microbiology, 52. pp. 757-763. ISSN 1466-5034 doi: https://doi.org/10.1099/ijs.0.01755-0

Boulange, C. L., Claus, S. P., Chou, C. J., Collino, S., Montoliu, I., Kochhar, S., Holmes, E., Rezzi, S., Nicholson, J. K., Dumas, M. E. and Martin, F.-P. J. (2013) Early metabolic adaptation in C57BL/6 mice resistant to high fat diet induced weight gain involves an activation of mitochondrial oxidative pathways. Journal of Proteome Research, 12 (4). pp. 1956-1968. ISSN 1535-3907 doi: https://doi.org/10.1021/pr400051s

Boura, M., Keating, C., Royet, K., Paudyal, R., O’Donoghue, B., O'Byrne, C. P. and Karatzas, K. A. G. (2016) Loss of SigB in Listeria monocytogenes strains EGD-e and 10403S leads to hypersensitivity to hydrogen peroxide in stationary phase under aerobic conditions. Applied and Environmental Microbiology, 82 (15). pp. 4584-4591. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.00709-16

Boyle, F.G., Lien, E.L., Wrenn, J.M., Marsh, B.B., Anderson, W.I., Angelosanto, F.A. and McCartney, A.L. (2008) Safety evaluation of oligofructose: 13 Week rat study and in vitro mutagenicity. Food and Chemical Toxicology, 46 (9). pp. 3132-3139. ISSN 0278-6915 doi: https://doi.org/10.1016/j.fct.2008.06.079

Brighina, S., Poveda Turrado, C., Restuccia, C., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Fallico, B., Oruna-Concha, M. J. ORCID: https://orcid.org/0000-0001-7916-1592 and Arena, E. (2021) Detrimental effect on the gut microbiota of 1,2-dicarbonyl compounds after in vitro gastro-intestinal and fermentative digestion. Food Chemistry, 341. 128237. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2020.128237

Brouns, F., Delzenne, N. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2017) The dietary fibers- FODMAPs controversy. Cereal Foods World, 62 (3). pp. 98-103. ISSN 0146-6283 doi: https://doi.org/10.1094/CFW-62-3-0098

Brouwer, A., Hill, A. and Woodward, M. J. (2011) What makes a Salmonella strain epidemic? An expert opinion workshop. Veterinary Record, 168 (4). 98. ISSN 2042-7670 doi: https://doi.org/10.1136/vr.c5429

Brownawell, A. M., Caers, W., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Kendall, C. W.C., Lewis, K. D., Ringel, Y. and Slavin, J. L. (2012) Prebiotics and the health benefits of fiber: current regulatory status, future research, and goals. Journal of Nutrition, 142 (5). pp. 962-974. ISSN 1541-6100 doi: https://doi.org/10.3945/jn.112.158147

Bruck, W. M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Bruck, T. B. (2014) The effect of proteolysis on the induction of cell death by monomeric alpha-lactalbumin. Biochimie, 97. pp. 138-143. ISSN 0300-9084 doi: https://doi.org/10.1016/j.biochi.2013.10.007

Brück, W.M., Graverholt, G. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2002) Use of batch culture and a two-stage continuous culture system to study the effect of supplemental a-lactalbumin and glycomacropeptide on mixed populations of human gut bacteria. FEMS Microbiology Ecology, 41 (3). pp. 231-237. ISSN 1574-6941 doi: https://doi.org/10.1016/S0168-6496(02)00296-9

Brück, W.M., Kelleher, S.L., Lönnerdal, B., Nielsen, K.E., Chatterton, D. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2002) Fermentation studies on selected infant milk components using in vitro models of the human gut and rhesus monkeys. Journal of Paediatric Research, 37. pp. 273-280.

Buckley, A. M., Webber, M. A., Cooles, S., Randall, L. P., La Ragione, R. M., Woodward, M. J. and Piddock, L. J. V. (2006) The AcrAB-TolC efflux system of Salmonella enterica serovar Typhimurium plays a role in pathogenesis. Cellular Microbiology, 8 (5). pp. 847-856. ISSN 1462-5814 doi: https://doi.org/10.1111/j.1462-5822.2005.00671.x

Bulut, S. and Karatzas, K. A.G. (2021) Inactivation of Escherichia coli K12 in phosphate buffer saline and orange juice by high hydrostatic pressure processing combined with freezing. LWT-Food Science and Technology, 136 (1). 110313. ISSN 0023-6438 doi: https://doi.org/10.1016/j.lwt.2020.110313

Burriel, A. R., Dalley, C. and Woodward, M. J. (2003) Prevalence of Leptospira species among farmed and domestic animals in Greece. Veterinary Record, 153 (5). pp. 146-148. ISSN 0042-4900 doi: https://doi.org/10.1136/vr.153.5.146

Cani, P., Neyrinck, A., Tuohy, K. M., Fava, F., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Knauf, C., Burcelin, R. and Delzenne, N. (2007) Fermentable carbohydrates reduce obesity and diabetes in mice fed a high fat diet. Annals of Nutrition and Metabolism, 51 (Suppl. 1). pp. 352-353. ISSN 0250-6807 doi: https://doi.org/10.1159/000105122 (special issue 'European Nutrition Conference')

Carroll, P., La Ragione, R. M., Sayers, A. R. and Woodward, M. J. (2004) The O-antigen of Salmonella enterica serotype Enteritidis PT4: a significant factor in gastrointestinal colonisation of young but not newly hatched chicks. Veterinary Microbiology, 102 (1-2). pp. 73-85. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2004.05.003

Carter, A., Adams, M., La Ragione, R. M. and Woodward, M. J. (2017) Colonisation of poultry by Salmonella Enteritidis S1400 is reduced by combined administration of Lactobacillus salivarius 59 and Enterococcus faecium PXN-33. Veterinary Microbiology, 199. pp. 100-107. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2016.12.029

Carter, B., Wu, G. H., Woodward, M. J. and Anjum, M. F. (2008) A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes. Bmc Genomics, 9. ISSN 1471-2164 doi: https://doi.org/10.1186/1471-2164-9-53

Cartman, S. T., La Ragione, R. M. and Woodward, M. J. (2008) Bacillus subtilis spores germinate in the chicken gastrointestinal tract. Applied and Environmental Microbiology, 74 (16). pp. 5254-5258. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.00580-08

Cassar, C. A., Ottaway, M., Paiba, G. A., Futter, R., Newbould, S. and Woodward, M. J. (2004) Absence of enteroaggregative Escherichia coli in farmed animals in Great Britain. Veterinary Record, 154 (8). pp. 237-239. ISSN 0042-4900

Castelletto, V., Barnes, R. H., Karatzas, K.-A., Edwards-Gayle, C. J. C., Greco, F., Hamley, I. W. ORCID: https://orcid.org/0000-0002-4549-0926, Seitsonen, J. and Ruokolainen, J. (2019) Restructuring of lipid membranes by an arginine-capped peptide bolaamphiphile. Langmuir, 35 (5). pp. 1302-1311. ISSN 0743-7463 doi: https://doi.org/10.1021/acs.langmuir.8b01014

Castelletto, V., Barnes, R. H., Karatzas, K.-A., Edwards-Gayle, C. J. C., Greco, F., Hamley, I. W. ORCID: https://orcid.org/0000-0002-4549-0926, Rambo, R., Seitsonen, J. and Ruokolainen, J. (2018) Arginine-containing surfactant-like peptides: interaction with lipid membranes and antimicrobial activity. Biomacromolecules, 19 (7). pp. 2782-2794. ISSN 1525-7797 doi: https://doi.org/10.1021/acs.biomac.8b00391

Chambers, E. S., Viardot, A., Psichas, A., Morrison, D. J., Murphy, K. G., Zac-Varghese, S. E. K., Macdougall, K., Preston, T., Tedford, C., Finlayson, G. S., Blundell, J. E., Bell, J. D., Thomas, E. L., Mt-Isa, S., Ashby, D., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Kolida, S., Dhillo, W. S., Bloom, S. R., Morley, W., Clegg, S. and Frost, G. (2015) Effects of targeted delivery of propionate to the human colon on appetite regulation, body weight maintenance and adiposity in overweight adults. Gut, 64 (11). pp. 1744-1754. ISSN 1468-3288 doi: https://doi.org/10.1136/gutjnl-2014-307913

Champion, O. L., Karlyshev, A. V., Senior, N. J., Woodward, M. J., La Ragione, R., Howard, S. L., Wren, B. W. and Titball, R. W. (2010) Insect infection model for campylobacter jejuni reveals that O-methyl phosphoramidate has insecticidal activity. Journal of Infectious Diseases, 201 (5). pp. 776-782. ISSN 0022-1899 doi: https://doi.org/10.1086/650494

Chapman, C. M. C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Rowland, I. (2014) Effects of single- and multi-strain probiotics on biofilm formation and in vitro adhesion to bladder cells by urinary tract pathogens. Anaerobe, 27. pp. 71-76. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2014.02.001

Chapman, C. M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Rowland, I. (2011) Health benefits of probiotics: are mixtures more effective than single strains? European Journal of Nutrition, 50 (1). pp. 1-17. ISSN 1436-6207 doi: https://doi.org/10.1007/s00394-010-0166-z

Chapman, C.M.C., Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476, Todd, S. ORCID: https://orcid.org/0000-0002-9981-923X and Rowland, I. (2013) Comparative in vitro inhibition of urinary tract pathogens by single- and multi-strain probiotics. European Journal of Nutrition, 52 (6). pp. 1669-1677. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-013-0501-2

Charalampous, N., Grammatikopoulos, G., Kourmentza, C., Kornaros, M. and Dailianis, S. (2019) Effects of Burkholderia thailandensis rhamnolipids on the unicellular algae Dunaliella tertiolecta. Ecotoxicology and Environmental Safety, 182. 109413. ISSN 0147-6513 doi: https://doi.org/10.1016/j.ecoenv.2019.109413

Charoenwong, D., Andrews, S. ORCID: https://orcid.org/0000-0003-4295-2686 and Mackey, B. (2011) Role of rpoS in the Development of Cell Envelope Resilience and Pressure Resistance in Stationary-Phase Escherichia coli. Applied and Environmental Microbiology, 77 (15). pp. 5220-5229. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.00648-11

Chart, H., Smith, H. R., La Ragione, R. M. and Woodward, M. J. (2000) An investigation into the pathogenic properties of Escherichia coli strains BLR, BL21, DH5 alpha and EQ1. Journal of Applied Microbiology, 89 (6). pp. 1048-1058. ISSN 1364-5072 doi: https://doi.org/10.1046/j.1365-2672.2000.01211.x

Chattaway, M. A., Jenkins, C., Ciesielczuk, H., Day, M., DoNascimento, V., Rodríguez, I., van Essen-Zandbergen, A., Schink, A.-K., Wu, G., Threlfall, J., Woodward, M. J., Coldham, N., Kadlec, K., Schwarz, S., Dierikx, C., Guerra, B., Helmuth, R., Mevius, D., Woodford, N. and Wain, J. (2014) Evidence of evolving extraintestinal enteroaggregative Escherichia coli ST38 clone. Emerging Infectious Diseases, 20 (11). pp. 1935-1937. ISSN 1080-6040 doi: https://doi.org/10.3201/eid2011.131845

Chekmeneva, E., Correia, G., Denes, J., Gomez-Romero, M., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Perenyi, D. R., Koot, Y., Boomsma, C., Want, E. J., Dixon, P. H., Macklon, N. S., Chan, Q., Takats, Z., Nicholson, J. K. and Holmes, E. (2015) Development of nanoelectrospray high resolution isotope dilution mass spectrometry for targeted quantitative analysis of urinary metabolites: application to population profiling and clinical studies. Analytical Methods, 7 (12). pp. 5122-5133. ISSN 1759-9679 doi: https://doi.org/10.1039/c5ay00850f

Chekmeneva, E., dos Santos Correia, G., Chan, Q., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Tin, A., Young, J. H., Elliott, P., Nicholson, J. K. and Holmes, E. (2017) Optimization and application of direct infusion nanoelectrospray HRMS method for large-scale urinary metabolic phenotyping in molecular epidemiology. Journal of Proteome Research, 16 (4). pp. 1646-1658. ISSN 1535-3907 doi: https://doi.org/10.1021/acs.jproteome.6b01003

Childs, C. E., Roytio, H., Alhoniemi, E., Fekete, A. A., Forssten, S. D., Hudjec, N., Lim, Y. N., Steger, C. J., Yaqoob, P. ORCID: https://orcid.org/0000-0002-6716-7599, Tuohy, K. M., Rastall, R. A., Ouwehand, A. C. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2014) Xylo-oligosaccharides alone or in synbiotic combination with Bifidobacterium animalis subsp. lactis induce bifidogenesis and modulate markers of immune function in healthy adults: a double-blind, placebo-controlled, randomised, factorial cross-over study. British Journal of Nutrition, 111 (11). pp. 1945-1956. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114513004261

Christl, S.U., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and Cummings, J.H. (1993) Methanogenesis in the human large intestine. Gut (34). pp. 573-574.

Christl, S.U., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and Cummings, J.H. (1992) Role of dietary sulphate in the regulation of methanogenesis in the human large intestine. Gut (33). pp. 1234-1238.

Christl, S.U., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Murgatroyd, P.R., Sheppach, W. and Cummings, J.H. (1993) Impaired hydrogen metabolism in pneumatosis coli. Gastroenterology (104). pp. 392-397.

Christl, S.U., Murgatroyd, P.R., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and Cummings, J.H. (1992) Production, excretion and metabolism of hydrogen in the large intestine. Gastroenterology (102). pp. 1269-1277.

Christoforidou, Z., Burt, R., Mulder, I., Gill, B. P., Pluske, J., Kelly, D., Stokes, C. R., Bailey, M. and Lewis, M. C. (2018) Development of immune cells in the intestinal mucosa can be affected by intensive and extensive farm environments, and antibiotic use. Frontiers in Immunology, 9. 1061. ISSN 1664-3224 doi: https://doi.org/10.3389/fimmu.2018.01061

Christoforidou, Z., Mora Ortiz, M., Poveda, C., Abbas, M., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Bailey, M. and Lewis, M. C. (2019) Sexual dimorphism in immune development and in response to nutritional intervention in neonatal piglets. Frontiers in Immunology, 10. 2705. ISSN 1664-3224 doi: https://doi.org/10.3389/fimmu.2019.02705

Claus, S. (2017) Inulin prebiotic: is it all about bifidobacteria? Gut, 66 (11). pp. 1883-1884. ISSN 1468-3288 doi: https://doi.org/10.1136/gutjnl-2017-313800

Claus, S. P. (2014) Development of personalised functional foods needs metabolic profiling. Current Opinion in Clinical Nutrition and Metabolic Care, 17 (6). pp. 567-573. ISSN 1363-1950 doi: https://doi.org/10.1097/MCO.0000000000000107

Claus, S. P. (2013) Fighting undernutrition: don't forget the bugs. Cell Host and Microbe, 13 (3). pp. 239-240. ISSN 1931-3128 doi: https://doi.org/10.1016/j.chom.2013.02.015

Claus, S. P. (2014) Mammalian-microbial cometabolism of L-Carnitine in the context of atherosclerosis. Cell Metabolism, 20 (5). pp. 699-700. ISSN 1550-4131 doi: https://doi.org/10.1016/j.cmet.2014.10.014

Claus, S. P. (2017) Will gut microbiota help design the next generation of GLP1-based therapies for type 2 diabetes? Cell Metabolism, 26 (1). pp. 6-7. ISSN 1550-4131 doi: https://doi.org/10.1016/j.cmet.2017.06.009

Claus, S. P. and Swann, J. R. (2013) Nutrimetabonomics: applications for nutritional sciences, with specific reference to gut microbial interactions. Annual Review of Food Science and Technology, 4. pp. 381-399. ISSN 1941-1413 doi: https://doi.org/10.1146/annurev-food-030212-182612

Claus, S. P., Ellero, S. L., Berger, B., Krause, L., Bruttin, A., Molina, J., Paris, A., Want, E. J., de Waziers, I., Cloarec, O., Richards, S. E., Wang, Y., Dumas, M.-E., Ross, A., Rezzi, S., Kochhar, S., Van Bladeren, P., Lindon, J. C., Holmes, E. and Nicholson, J. K. (2011) Colonization-induced host-gut microbial metabolic interaction. mBio, 2 (2). e00271-10. ISSN 2150-7511 doi: https://doi.org/10.1128/mBio.00271-10

Claus, S. P., Guillou, H. and Ellero-Simatos, S. (2016) The gut microbiota: a major player in the toxicity of environmental pollutants? npj Biofilms and Microbiomes, 2. 16003. ISSN 2055-5008 doi: https://doi.org/10.1038/npjbiofilms.2016.3

Claus, S. P., Tsang, T. M., Wang, Y., Cloarec, O., Skordi, E., Martin, F.-P., Rezzi, S., Ross, A., Kochhar, S., Holmes, E. and Nicholson, J. K. (2008) Systemic multicompartmental effects of the gut microbiome on mouse metabolic phenotypes. Molecular systems biology, 4 (219). ISSN 1744-4292 doi: https://doi.org/10.1038/msb.2008.56

Clifton-Hadley, F. A., Breslin, M., Venables, L. M., Sprigings, K. A., Cooles, S. W., Houghton, S. and Woodward, M. J. (2002) A laboratory study of an inactivated bivalent iron restricted Salmonella enterica serovars Enteritidis and Typhimurium dual vaccine against Typhimurium challenge in chickens. Veterinary Microbiology, 89 (2-3). pp. 167-179. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(02)00169-4

Cogan, T. A., Domingue, G., Lappin-Scott, H. M., Benson, C. E., Woodward, M. J. and Humphrey, T. J. (2001) Growth of Salmonella enteritidis in artificially contaminated eggs: the effects of inoculum size and suspending media. International Journal of Food Microbiology, 70 (1-2). pp. 131-141. ISSN 0168-1605 doi: https://doi.org/10.1016/s0168-1605(01)00540-2

Cogan, T. A., Jorgensen, F., Lappin-Scott, H. M., Benson, C. E., Woodward, M. J. and Humphrey, T. J. (2004) Flagella and curli fimbriae are important for the growth of Salmonella enterica serovars in hen eggs. Microbiology, 150 (4). pp. 1063-1071. ISSN 1465-2080 doi: https://doi.org/10.1099/mic.0.26791-0

Cohen Kadosh, K., Basso, M., Knytl, P., Johnstone, N., Lau, J. Y.F. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2021) Psychobiotic interventions for anxiety in young people: a systematic review and meta-analysis, with youth consultation. Translational Psychiatry, 11. 352. ISSN 2158-3188 doi: https://doi.org/10.1038/s41398-021-01422-7

Coldham, N. G. and Woodward, M. J. (2004) Characterization of the Salmonella typhimurium proteome by semi-automated two dimensional HPLC-mass spectrometry: detection of proteins implicated in multiple antibiotic resistance. Journal of Proteome Research, 3 (3). pp. 595-603. ISSN 1535-3893 doi: https://doi.org/10.1021/pr034129u

Coldham, N. G., Randall, L. P., Piddock, L. J. V. and Woodward, M. J. (2006) Effect of fluoroquinolone exposure on the proteome of Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 58 (6). pp. 1145-1153. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkl413

Coldham, N. G., Webber, M., Woodward, M. J. and Piddock, L. J. V. (2010) A 96-well plate fluorescence assay for assessment of cellular permeability and active efflux in Salmonella enterica serovar Typhimurium and Escherichia coli. Journal of Antimicrobial Chemotherapy, 65 (8). pp. 1655-1663. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkq169

Collighan, R. J. and Woodward, M. J. (2001) The SEF14 fimbrial antigen of Salmonella enterica serovar Enteritidis is encoded within a pathogenicity islet. Veterinary Microbiology, 80 (3). pp. 235-245. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(01)00309-1

Collighan, R. J. and Woodward, M. J. (1997) Sequence analysis and distribution of an IS3-like insertion element isolated from Salmonella enteritidis. Fems Microbiology Letters, 154 (2). pp. 207-213. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.1997.tb12645.x

Collighan, R. J. and Woodward, M. J. (1997) Spirochaetes and other bacterial species associated with bovine digital dermatitis. Fems Microbiology Letters, 156 (1). pp. 37-41. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.1997.tb12702.x

Collighan, R. J., Naylor, R. D., Martin, P. K., Cooley, B. A., Buller, N. and Woodward, M. J. (2000) A spirochete isolated from a case of severe virulent ovine foot disease is closely related to a Treponeme isolated from human periodontitis and bovine digital dermatitis. Veterinary Microbiology, 74 (3). pp. 249-257. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(00)00190-5

Collighan, R. J., Walker, S. L. and Woodward, M. J. (2000) Sequence analysis and distribution in Salmonella enterica serovars of IS3-like elements. International Journal of Medical Microbiology, 290 (7). pp. 619-626. ISSN 1438-4221 doi: https://doi.org/10.1016/S1438-4221(00)80011-9

Collins, J. W., Coldham, N. G., Salguero, F. J., Cooley, W. A., Newell, W. R., Rastall, R. A., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Woodward, M. J. and LaRagione, R. M. (2010) Response of porcine intestinal in vitro organ culture tissues following exposure to Lactobacillus plantarum JC1 and Salmonella Typhimurium SL1344. Applied and Environmental Microbiology, 76 (19). pp. 6645-6657. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.03115-09

Collins, M. D., Hoyles, L., Foster, G., Falsen, E. and Weiss, N. (2002) Arthrobacter nasiphocae sp. nov., from the common seal (Phoca vitulina). International Journal of Systematic and Evolutionary Microbiology, 52 (2). pp. 569-571. ISSN 1466-5034

Collins, M. D., Hoyles, L., Foster, G., Sjödén, B. and Falsen, E. (2001) Corynebacterium capitovis sp. nov., from a sheep. International Journal of Systematic and Evolutionary Microbiology, 51 (3). pp. 857-860. ISSN 1466-5034

Collins, M. D., Hoyles, L., Hutson, R. A., Foster, G. and Falsen, E. (2001) Corynebacterium testudinoris sp. nov., from a tortoise, and Corynebacterium felinum sp. nov., from a Scottish wild cat. International Journal of Systematic and Evolutionary Microbiology, 51 (4). pp. 1349-1352. ISSN 1466-5034

Collins, M. D., Hoyles, L., Kalfas, S., Sundquist, G., Monsen, T., Nikolaitchouk, N. and Falsen, E. (2000) Characterization of Actinomyces isolates from infected root canals of teeth: description of Actinomyces radicidentis sp. nov. Journal of Clinical Microbiology, 38 (9). pp. 3399-3403. ISSN 0095-1137

Collins, M. D., Hoyles, L., Lawson, P. A., Falsen, E., Robson, R. L. and Foster, G. (1999) Phenotypic and phylogenetic characterization of a new Corynebacterium species from dogs: description of Corynebacterium auriscanis sp. nov. Journal of Clinical Microbiology, 37 (11). pp. 3443-3447. ISSN 0095-1137

Collins, M. D., Hoyles, L., Tornqvist, E., von Essen, R. and Falsen, E. (2001) Characterization of some strains from human clinical sources which resemble “Leptotrichia sanguinegens”: description of Sneathia sanguinegens sp. nov., gen. nov. Systematic and Applied Microbiology, 24 (3). pp. 358-361. ISSN 0723-2020 doi: https://doi.org/10.1078/0723-2020-00047

Collins, M. D., Hutson, R. A., Hoyles, L., Falsen, E., Nikolaitchouk, N. and Foster, G. (2001) Streptococcus ovis sp. nov., isolated from sheep. International Journal of Systematic and Evolutionary Microbiology, 51 (3). pp. 1147-1150. ISSN 1466-5034

Collins, M.D. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (1999) Probiotics, prebiotics and synbiotics: Dietary approaches for the modulation of microbial ecology. American Journal of Clinical Nutrition (69). pp. 1052-1057.

Collins, S. M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Kennedy, O. B. ORCID: https://orcid.org/0000-0003-3885-4872, Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Rowland, I. and Commane, D. M. (2021) Development of a prebiotic blend to influence in vitro fermentation effects, with a focus on propionate, in the gut. FEMS Microbiology Ecology, 97 (8). fiab101. ISSN 1574-6941 doi: https://doi.org/10.1093/femsec/fiab101

Collins, S. M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Stainton, G. N., Bertocco, A., Kennedy, O. B. ORCID: https://orcid.org/0000-0003-3885-4872, Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Commane, D. M. (2023) Chronic consumption of a blend of inulin and arabinoxylan reduces energy intake in an ad libitum meal but does not influence perceptions of appetite and satiety: a randomised control‑controlled crossover trial. European Journal of Nutrition, 62. pp. 2205-2215. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-023-03136-6

Connolly, J., Valdramidis, V. P., Byrne, E., Karatzas, K.-A., Cullen, P. J., Keener, K. M. and Mosnier, J. P. (2013) Characterization and antimicrobial efficacy against E. coli of a helium/air plasma at atmospheric pressure created in a plastic package. Journal of Physics D: Applied Physics, 46 (3). 035401. ISSN 1361-6463 doi: https://doi.org/10.1088/0022-3727/46/3/035401

Cookson, A. L. and Woodward, M. J. (2003) The role of intimin in the adherence of enterohaemorrhagic Escherichia coli (EHEC) O157:H7 to HEp-2 tissue culture cells and to bovine gut explant tissues. International Journal of Medical Microbiology, 292 (7-8). pp. 547-553. ISSN 1438-4221 doi: https://doi.org/10.1078/1438-4221-00235

Cookson, A. L., Cooley, W. A. and Woodward, M. J. (2002) The role of type 1 and curli fimbriae of Shiga toxin-producing Escherichia coli in adherence to abiotic surfaces. International Journal of Medical Microbiology, 292 (3-4). pp. 195-205. ISSN 1438-4221 doi: https://doi.org/10.1078/1438-4221-00203

Cookson, A. L., Hayes, C. M., Pearson, G. R., Roe, J. M., Wales, A. D. and Woodward, M. J. (2002) Isolation from a sheep of an attaching and effacing Escherichia coli O115:H- with a novel combination of virulence factors. Journal of Medical Microbiology, 51 (12). pp. 1041-1049. ISSN 0022-2615

Cookson, A. L., Wales, A. D., Roe, J. M., Hayes, C. M., Pearson, G. R. and Woodward, M. J. (2002) Variation in the persistence of Escherichia coli O157:H7 in experimentally inoculated 6-week-old conventional lambs. Journal of Medical Microbiology, 51 (12). pp. 1032-1040. ISSN 0022-2615

Cordoni, G., Woodward, M. J., Wu, H., Alanazi, M., Wallis, T. and La Ragione, R. M. (2016) Comparative genomics of European Avian Pathogenic E. coli (APEC). BMC Genomics, 17 (1). 960. ISSN 1471-2164 doi: https://doi.org/10.1186/s12864-016-3289-7

Correia, G. D., Ng, K. W., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Gala-Peralta, S., Williams, R., MacCarthy-Morrogh, S., Jiménez, B., Inwald, D., Macrae, D., Frost, G., Holmes, E. and Pathan, N. (2015) Metabolic profiling of children undergoing surgery for congenital heart disease. Critical Care Medicine, 43 (7). pp. 1467-1476. ISSN 1530-0293 doi: https://doi.org/10.1097/CCM.0000000000000982

Costabile, A., Bergillos-Meca, T., Raskinkangas, P., Korpela, K., de Vos, W. M. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2017) Effects of soluble corn fiber alone or in synbiotic combination with Lactobacillus rhamnosus GG and the Pilus-deficient derivative GG-PB12 on fecal microbiota, metabolism, and markers of immune function: a randomized, double-blind, placebo-controlled, crossover study in healthy elderly (Saimes study). Frontiers in Immunology, 8. 1443. ISSN 1664-3224 doi: https://doi.org/10.3389/fimmu.2017.01443

Costabile, A., Deaville, E. R., Morales, A. M. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2016) Prebiotic potential of a maize-based soluble fibre and impact of dose on the human gut microbiota. PLoS ONE, 11 (1). e0144457. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0144457

Costabile, A., Fava, F., Roytio, H., Forssten, S. D., Olli, K., Klievink, J., Rowland, I. R., Ouwehand, A. C., Rastall, R. A., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 (2012) Impact of polydextrose on the faecal microbiota: a double-blind, crossover, placebo-controlled feeding study in healthy human subjects. British Journal of Nutrition, 108 (3). pp. 471-481. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114511005782

Costabile, A., Kolida, S., Klinder, A., Gielt, E., Bäuerlein, M., Frohberg, C., Landschütze, V. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2010) A double-blind, placebo-controlled, cross-over study to establish the bifidogenic effect of a very-long-chain inulin extracted from globe artichoke (Cynara scolymus) in healthy human subjects. British Journal of Nutrition, 104 (7). pp. 1007-1017. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114510001571

Costabile, A., Sanghi, S., Martin-Palaez, S., Mueller-Harvey, I., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A. and Klinder, A. (2011) Inhibition of Salmonella Typhimurium by tannins in vitro. Journal of Food, Agriculture & Environment, 9 (1). pp. 119-124. ISSN 1459-0263

Costabile, A., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Tzortzis, G., Vulevic, J., Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2015) Effects of orange juice formulation on prebiotic functionality using an in vitro colonic model sytem. PLoS ONE, 10 (3). e0121955. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0121955

Costabile, A., Buttarazzi, I., Kolida, S., Quercia, S., Baldini, J., Swann, J. R., Brigidi, P. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2017) An in vivo assessment of the cholesterol-lowering efficacy of Lactobacillus plantarum ECGC 13110402 in normal to mildly hypercholesterolaemic adults. PLOS ONE, 12 (12). e0187964. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0187964

Costabile, A., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Tzortzis, G., Vulevic, J., Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2015) Development of a bread delivery vehicle for dietary prebiotics to enhance food functionality targeted at those with metabolic syndrome. Gut Microbes, 6 (5). pp. 300-309. ISSN 1949-0984 doi: https://doi.org/10.1080/19490976.2015.1064577

Cottell, J. L., Webber, M. A., Coldham, N. G., Taylor, D. L., Cerdeno-Tarraga, A. M., Hauser, H., Thomson, N. R., Woodward, M. and Piddock, L. J. V. (2011) Complete sequence and molecular epidemiology of IncK epidemic plasmid encoding bla(CTX-M-14). Emerging Infectious Diseases, 17 (4). pp. 645-652. ISSN 1080-6040 doi: https://doi.org/10.3201/eid1704.101009

Couteau, D., McCartney, A. L., Gibson, G. R., Williamson, G. and Faulds, C. B. (2001) Isolation and characterization of human colonic bacteria able to hydrolyse chlorogenic acid. Journal of Applied Microbiology, 90 (6). pp. 873-881. ISSN 1365-2672 doi: https://doi.org/10.1046/j.1365-2672.2001.01316.x

Cox, R., Su, T., Clough, H., Woodward, M. J. and Sherlock, C. (2012) Spatial and temporal patterns in antimicrobial resistance of Salmonella Typhimurium in cattle in England and Wales. Epidemiology and Infection, 140 (11). pp. 2062-2073. ISSN 1469-4409 doi: https://doi.org/10.1017/S0950268811002755

Craggs, M., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Whalley, P. and Collins, C. (2020) Bioaccessibility of difenoconazole in rice following industry standard processing and preparation procedures. Journal of Agricultural and Food Chemistry, 68 (37). pp. 10167-10173. ISSN 0021-8561 doi: https://doi.org/10.1021/acs.jafc.0c02648

Cueva, C., Sánchez-Patán, F., Monagas, M., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Martín-Álvarez, P. J., Bartolomé, B. and Moreno-Arribas, M. V. (2013) In vitro fermentation of grape seed flavan-3-ol fractions by human faecal microbiota: changes in microbial groups and phenolic metabolites. FEMS Microbiology Ecology, 83 (3). pp. 792-805. ISSN 1574-6941 doi: https://doi.org/10.1111/1574-6941.12037

Cummings, J.H., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and Macfarlane, G.T. (1989) Quantitative estimates of fermentation in the hind gut of man. Acta Veterinaria Scandanavica (86). pp. 76-82.

Cummings, J.H., Milojevic, S., Newton, J.M., Harding, M., Coward, W.A., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Botham, R.L., Ring, S.G., Wraight, A.P., Stockham, M.A. and Allwood, M.A. (1996) In vivo studies of amylose coated microspheres for drug delivery to the colon. Journal of Controlled Release (40). pp. 123-131.

Cunningham, K., Claus, S. P., Lindon, J. C., Holmes, E., Everett, J. R., Nicholson, J. K. and Coen, M. (2012) Pharmacometabonomic characterization of xenobiotic and endogenous metabolic phenotypes that account for inter-individual variation in isoniazid-induced toxicological response. Journal of Proteome Research, 11 (9). pp. 4630-4642. ISSN 1535-3907 doi: https://doi.org/10.1021/pr300430u

Cutler, S. J. and Woodward, M. J. (2001) Lyme borreliosis in the UK: ecology and risks to domestic animals and man. Reviews in Medical Microbiology, 12 (4). pp. 199-209. ISSN 0954-139X

Cysneiros, D., Banks, C. J., Heaven, S. and Karatzas, K.-A. (2012) The effect of pH control and ‘hydraulic flush’ on hydrolysis and Volatile Fatty Acids (VFA) production and profile in anaerobic leach bed reactors digesting a high solids content substrate. Bioresource Technology. ISSN 0960-8524

Cysneiros, D., Banks, C. J., Heaven, S. and Karatzas, K.-A. G. (2012) The role of phase separation and feed cycle length in leach beds coupled to methanogenic reactors for digestion of a solid substrate (Part 1): Optimisation of reactors’ performance. Bioresource Technology, 103 (1). pp. 56-63. ISSN 0960-8524 doi: https://doi.org/10.1016/j.biortech.2011.09.094

Cysneiros, D., Banks, C. J., Heaven, S. and Karatzas, K.-A. G. (2011) The role of phase separation and feed cycle length in leach beds coupled to methanogenic reactors for digestion of a solid substrate (Part 2): Hydrolysis, acidification and methanogenesis in a two-phase system. Bioresource Technology, 102 (16). pp. 7393-7400. ISSN 0960-8524 doi: https://doi.org/10.1016/j.biortech.2011.05.042

D'Altero, G. L., Bazeley, K. J., Pearson, G. R., Jones, J. R., Jose, M. and Woodward, M. J. (2003) Meningitis associated with Salmonella Newport in a neonatal alpaca (Lama pacos) in the United Kingdom. Veterinary Record, 152 (2). pp. 56-57. ISSN 0042-4900

Dadkhah, H., Bassami, M. R., Hashemi, S., Shahraz, F., Hosseini, H., Karatzas, K. A. G. and Khaksar, R. (2012) Evaluation and comparison of SYBR Green I Real-Time PCR and TaqMan Real-Time PCR methods for quantitative assay of Listeria monocytogenes in nutrient broth and milk. African Journal of Microbiology Research, 6 (9). pp. 1908-1917. ISSN 1996-0808 doi: https://doi.org/10.5897/AJMR11.889

Dahan, S., Wiles, S., La Ragione, R. M., Best, A., Woodward, M. J., Stevens, M. P., Shaw, R. K., Chong, Y., Knutton, S., Phillips, A. and Frankel, G. (2005) EspJ is a prophage-carried type III effector protein of attaching and effacing pathogens that modulates infection dynamics. Infection and Immunity, 73 (2). pp. 679-686. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.73.2.679-686.2005

Dahl, S. M., Rolfe, V., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2023) Gut microbial modulation by culinary herbs and spices. Food Chemistry, 409. 135286. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2022.135286

Dakheel, M. M. ORCID: https://orcid.org/0000-0002-1938-8098, Al-Bedhawi, M. A. A., Al-Mnaser, A. A., Woodward, M. J., Mora-Ortiz, M. and Rymer, C. ORCID: https://orcid.org/0000-0002-3535-4330 (2021) In vitro impact of condensed tannins on the caecal metabolites of chickens. Brazilian Journal of Veterinary Research and Animal Science, 58. e174733. ISSN 1413-9596 doi: https://doi.org/10.11606/issn.1678-4456.bjvras.2021.174733

Dakheel, M. M., Alkandari, F. A. H., Mueller-Harvey, I., Woodward, M. J. and Rymer, C. ORCID: https://orcid.org/0000-0002-3535-4330 (2020) Antimicrobial in vitro activities of condensed tannin extracts on avian pathogenic Escherichia coli. Letters in Applied Microbiology, 70 (3). pp. 165-172. ISSN 1472-765X doi: https://doi.org/10.1111/lam.13253

Daud, N. M., Ismail, N. A., Thomas, E. L., Fitzpatrick, J. A., Bell, J. D., Swann, J. R., Costabile, A., Childs, C. E., Pedersen, C., Goldstone, A. P. and Frost, G. S. (2014) The impact of oligofructose on stimulation of gut hormones, appetite regulation, and adiposity. Obesity, 22 (6). pp. 1430-1438. ISSN 1930-739X doi: https://doi.org/10.1002/oby.20754

Day, M. J., Rodriguez, I., van Essen-Zandbergen, A., Dierikx, C., Kadlec, K., Schink, A. K., Wu, G., Chattaway, M. A., DoNascimento, V., Wain, J., Helmuth, R., Guerra, B., Schwarz, S., Threlfall, J., Woodward, M. J., Coldham, N., Mevius, D. and Woodford, N. (2016) Diversity of STs, plasmids and ESBL genes among Escherichia coli from humans, animals and food in Germany, the Netherlands and the UK. Journal of Antimicrobial Chemotherapy, 71 (5). pp. 1178-1182. ISSN 1460-2091 doi: https://doi.org/10.1093/jac/dkv485

De Castro, N. M., Yaqoob, P. ORCID: https://orcid.org/0000-0002-6716-7599, De la Fuente, M., Baeza, I. and Claus, S. P. (2013) Premature impairment of methylation pathway and cardiac metabolic dysfunction in fa/fa obese Zucker rats. Journal of Proteome Research, 12 (4). pp. 1935-1945. ISSN 1535-3907 doi: https://doi.org/10.1021/pr400025y

Delsol, A. A., Anjum, M., Woodward, M. J., Sunderland, J. and Roe, J. M. (2003) The effect of chlortetracycline treatment and its subsequent withdrawal on multi-resistant Salmonella enterica serovar Typhimurium DT104 and commensal Escherichia coli in the pig. Journal of Applied Microbiology, 95 (6). pp. 1226-1234. ISSN 1364-5072 doi: https://doi.org/10.1046/j.1365-2672.2003.02088.x

Delsol, A. A., Halfhide, D. E., Bagnall, M. C., Randall, L. P., Enne, V. I., Woodward, M. J. and Roe, J. M. (2010) Persistence of a wild type Escherichia coli and its multiple antibiotic-resistant (MAR) derivatives in the abattoir and on chilled pig carcasses. International Journal of Food Microbiology, 140 (2-3). pp. 249-253. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2010.03.023

Delsol, A. A., Randall, L., Cooles, S., Woodward, M. J., Sunderland, J. and Roe, J. M. (2005) Effect of the growth promoter avilamycin on emergence and persistence of antimicrobial resistance in enteric bacteria in the pig. Journal of Applied Microbiology, 98 (3). pp. 564-571. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2004.02461.x

Delsol, A. A., Sunderland, J., Woodward, M. J., Pumbwe, L., Piddock, L. J. V. and Roe, J. M. (2004) Emergence of fluoroquinolone resistance in the native Campylobacter coli population of pigs exposed to enrofloxacin. Journal of Antimicrobial Chemotherapy, 53 (5). pp. 872-874. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkh150

Delsol, A. A., Woodward, M. J. and Roe, J. M. (2004) Comment on 'Effect of a 5 day enrofloxacin treatment on Salmonella enterica serotype Typhimurium DT104 in the pig': reply. Journal of Antimicrobial Chemotherapy, 54 (3). pp. 693-694. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkh400

Delsol, A. A., Woodward, M. J. and Roe, J. M. (2004) Effect of a 5 day enrofloxacin treatment on Salmonella enterica serotype Typhimurium DT104 in the pig. Journal of Antimicrobial Chemotherapy, 53 (2). pp. 396-398. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkh038

Demirkan, I., Carter, S. D., Murray, R. D., Blowey, R. W. and Woodward, M. J. (1998) The frequent detection of a treponeme in bovine digital dermatitis by immunocytochemistry and polymerase chain reaction. Veterinary Microbiology, 60 (2-4). pp. 285-292. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(98)00146-1

Dewulf, E. M., Cani, P. D., Claus, S. P., Fuentes, S., Puylaert, P. G. B., Neyrinck, A. M., Bindels, L. B., de Vos, W. M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Thissen, J.-P. and Delzenne, N. M. (2013) Insight into the prebiotic concept: lessons from an exploratory, double blind intervention study with inulin-type fructans in obese women. Gut, 32 (8). pp. 1112-1121. ISSN 1468-3288 doi: https://doi.org/10.1136/gutjnl-2012-303304

Dibb-Fuller, M. P. and Woodward, M. J. (2000) Contribution of fimbriae and flagella of Salmonella enteritidis to colonization and invasion of chicks. Avian Pathology, 29 (4). pp. 295-304. ISSN 0307-9457 doi: https://doi.org/10.1080/03079450050118412

Dibb-Fuller, M. P., Allen-Vercoe, E., Thorns, C. J. and Woodward, M. J. (1999) Fimbriae- and flagella-mediated association with and invasion of cultured epithelial cells by Salmonella enteritidis. Microbiology-Uk, 145. pp. 1023-1031. ISSN 1350-0872

Dibb-Fuller, M. P., Best, A., Stagg, D. A., Cooley, W. A. and Woodward, M. J. (2001) An in-vitro model for studying the interaction of Escherichia coli O157:H7 and other enteropathogens with bovine primary cell cultures. Journal of Medical Microbiology, 50 (9). pp. 759-769. ISSN 0022-2615

Dibb-Fuller, M., Allen-Vercoe, E., Woodward, M. J. and Thorns, C. J. (1997) Expression of SEF17 fimbriae by Salmonella enteritidis. Letters in Applied Microbiology, 25 (6). pp. 447-452. ISSN 0266-8254 doi: https://doi.org/10.1111/j.1472-765X.1997.tb00015.x

Donovan, S. M., Schneeman, B., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Sanders, M. E. (2012) Establishing and evaluating health claims for probiotics. Advances in Nutrition, 3 (5). pp. 723-725. ISSN 2156-5376 doi: https://doi.org/10.3945/an.112.002592

Drakoularakou, A., McCartney, A., Rastall, R. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2004) Established and emerging prebiotics and their effects on the gut microflora. Agro Food Industry Hi-Tech, 15 (5). pp. 18-20. ISSN 1722-6996

Drakoularakou, A., Tzortzis, G., Rastall, R. A. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2010) A double-blind, placebo-controlled, randomized human study assessing the capacity of a novel galacto-oligosaccharide mixture in reducing travellers' diarrhoea. European Journal of Clinical Nutrition, 64. pp. 146-152. ISSN 1476-5640 doi: https://doi.org/10.1038/ejcn.2009.120

Drakoularakou, A., Wells, A., Robinson, R.K., Rastall, B., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and McCartney, A. (2007) Acid and bile tolerance, adhesion properties and anti-pathogenic effects of three potential probiotic strains. International Journal of Probiotics and Prebiotics, 2 (4). pp. 185-194. ISSN 1555-1431 (Unpublished)

Duarte, I. F., Legido-Quigley, C., Parker, D. A., Swann, J., Spraul, M., Braumann, U., Gil, A. M., Holmes, E., Nicholson, J. K., Murphy, G. M., Vilca-Melendez, H., Heaton, N. and Lindon, J. C. (2009) Identification of metabolites in human hepatic bile using 800 MHz 1H NMR spectroscopy, HPLC-NMR/MS and UPLC-MS. Molecular Biosystems, 5. pp. 180-190. ISSN 1742-206X doi: https://doi.org/10.1039/B814426E

Eastwood, J., van Hemert, S., Poveda, C., Elmore, S. ORCID: https://orcid.org/0000-0002-2685-1773, Williams, C. ORCID: https://orcid.org/0000-0003-4452-671X, Lamport, D. ORCID: https://orcid.org/0000-0002-4592-0439 and Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635 (2023) The effect of probiotic bacteria on composition and metabolite production of faecal microbiota using in vitro batch cultures. Nutrients, 15 (11). 2563. ISSN 2072-6643 doi: https://doi.org/10.3390/nu15112563

Eastwood, J., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Van Hemert, S., Williams, C. ORCID: https://orcid.org/0000-0003-4452-671X and Lamport, D. ORCID: https://orcid.org/0000-0002-4592-0439 (2021) The effect of probiotics on cognitive function across the human lifespan: a systematic review. Neuroscience and Biobehavioral Reviews, 128. pp. 311-327. ISSN 0149-7634 doi: https://doi.org/10.1016/j.neubiorev.2021.06.032

Eaves, D. J., Liebana, E., Woodward, M. J. and Piddock, L. J. V. (2002) Detection of gyrA mutations in quinolone-resistant Salmonella enterica by denaturing high-performance liquid chromatography. Journal of Clinical Microbiology, 40 (11). pp. 4121-4125. ISSN 0095-1137 doi: https://doi.org/10.1128/jcm.40.11.4121-4125.2002

Eaves, D. J., Randall, L., Gray, D. T., Buckley, A., Woodward, M. J., White, A. P. and Piddock, L. J. V. (2004) Prevalence of mutations within the quinolone resistance-determining region of gyrA, gyrB, parC, and parE and association with antibiotic resistance in quinolone-resistant Salmonella enterica. Antimicrobial Agents and Chemotherapy, 48 (10). pp. 4012-4015. ISSN 1098-6596 doi: https://doi.org/10.1128/aac.48.10.4012-4015.2004

Edwards, A. M., Dymock, D., Woodward, M. J. and Jenkinson, H. F. (2003) Genetic relatedness and phenotypic characteristics of Treponema associated with human periodontal tissues and ruminant foot disease. Microbiology, 149. pp. 1083-1093. ISSN 1465-2080 doi: https://doi.org/10.1099/mic.0.26111-0

Edwards, A. M., Jenkinson, H. F., Woodward, M. J. and Dymock, D. (2005) Binding properties and adhesion-mediating regions of the major sheath protein of Treponema denticola ATCC 35405. Infection and Immunity, 73 (5). pp. 2891-2898. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.73.5.2891-2898.2005

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Florin, T.H.J., Neale, G., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Christl, S.U. and Cummings, J.H. (1991) Metabolism of dietary sulphate: absorption and excretion in humans. Gut (32). pp. 766-773.

Fogliano, V., Corollaro, M. L., Vitaglione, P., Napolitano, A., Ferracane, R., Travaglia, F., Arlorio, M., Costabile, A., Klinder, A. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2011) In vitro bioaccessibility and gut biotransformation of polyphenols present in the water-insoluble cocoa fraction. Molecular Nutrition & Food Research, 55 (Supplement). pp. 44-55. ISSN 1613-4125 doi: https://doi.org/10.1002/mnfr.201000360

Fooks, L., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and Rabiu, B. (2000) Current concepts in probiotics. Current Medical Literature, Clinical Nutrition (9). pp. 29-40.

Fooks, L.J. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2002) In vitro investigations of the effect of selected probiotics and prebiotics on human intestinal pathogens. FEMS Microbiology Ecology, 39 (1). pp. 67-75. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2002.tb00907.x

Fooks, L.J. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2002) Probiotics as modulators of the gut flora. British Journal of Nutrition, 88. S39-S49. ISSN 0007-1145 doi: https://doi.org/10.1079/BJN2002628 (supplement 1)

Fooks, L.J., Fuller, R. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (1999) Prebiotics, probiotics and human gut microbiology. International Dairy Journal (9). pp. 53-61.

Foster, A. R., Otter, A., Barlow, A. M., Pearson, G. R., Woodward, M. J. and Higgins, R. J. (2008) Naturally occurring intestinal lesions in three alpacas (Vicugna pacos) caused by attaching and effacing Escherichia coli. Veterinary Record, 162 (10). pp. 318-320. ISSN 0042-4900

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Freire-Martin, I., Thomas, C. M., Laing, E., AboOun, M., La Ragione, R. M. and Woodward, M. J. (2016) Curing vector for IncI1 plasmids and its use to provide evidence for a metabolic burden of IncI1 CTX-M-1 plasmid pIFM3791 on Klebsiella pneumoniae. Journal of Medical Microbiology, 65 (7). pp. 611-618. ISSN 1473-5644 doi: https://doi.org/10.1099/jmm.0.000271

Freire-Martín, I., AbuOun, M., Reichel, R., La Ragione, R. M. and Woodward, M. J. (2014) Sequence analysis of a CTX-M-1 IncI1 plasmid found in Salmonella enterica 4,5,12,i:-, Escherichia coli and Klebsiella pneumoniae on a single UK pig farm. Journal of Antimicrobial Chemotherapy, 69 (8). pp. 2098-2101. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dku098

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Frost, G. S., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J. R., Psichas, A., Costabile, A., Johnson, L. P., Sponheimer, M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Barraclough, T. G. (2014) Impacts of plant-based foods in ancestral hominin diets on the metabolism and function of gut microbiota in vitro. mBio, 5. e00853-14. ISSN 2150-7511 doi: https://doi.org/10.1128/mbio.00853-14

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Frost, J. N., Kit Tan, T., Abbas, M., Wideman, S. K., Bonadonna, M., Stoffel, N. U., Weay, K., Kronsteiner, B., Sits, G., Campagna, D. R., Duarte, T. L., Lopes, J. M., Shah, A., Armitage, A. E., Arezes, J., Jin Lim, P., Preston, A. E., Ahem, D., Teh, M., Naylor, C., Salio, M., Gileadi, U., Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686, Dunachie, S. J., Zimmermann, M. B., van der Klis, F. R. M., Cerundolo, V., Bannard, O., Draper, S. J., Townsend, A. R. M., Galy, B., Flamming, M. D., Lewis, M. C. and Drakesmith, H. (2021) Hepcidin-mediated hypoferremia disrupts immune responses to vaccination and infection. Med, 2 (2). pp. 164-179. ISSN 2666-6340 doi: https://doi.org/10.1016/j.medj.2020.10.004

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Fuller, R. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (1997) Modification of the intestinal microflora using probiotics and prebiotics. Scandinavian Journal of Gastroenterology (32). pp. 28-31.

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Gan, X. T., Ettinger, G., Huang, C. X., Burton, J. P., Haist, J. V., Rajapurohitam, V., Sidaway, J. E., Martin, G., Gloor, G. B., Swann, J. R., Reid, G. and Karmazyn, M. (2014) Probiotic administration attenuates myocardial hypertrophy and heart failure following myocardial infarction in the rat. Circulation : heart failure, 7 (3). pp. 491-499. ISSN 1941-3289 doi: https://doi.org/10.1161/​CIRCHEARTFAILURE.113.000978

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Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (1994) Gas metabolism by human colonic bacteria and consequences for the host. Journal of Applied Bacteriology. pp. 25-29. ISSN 1365-2672 (special issue:The W.H. Pierce Memorial Symposium)

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Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Macfarlane, G.T. and Cummings, J.H. (1993) Leading article: Sulphate-reducing bacteria and hydrogen metabolism in the human large intestine. Gut (34). pp. 437-439.

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Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Parkes, R.J. and Herbert, R.A. (1989) Biological availability and turnover rate of acetate in marine and estuarine sediments and the relationship to dissimilatory sulphate reduction. FEMS Microbiology Ecology (62). pp. 303-306.

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Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Willis, C.L. and Van Loo, J. (1994) Non digestible oligosaccharides and bifidobacteria: implications for health. International Sugar Journal (96). pp. 381-387. ISSN 0020-8841

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Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Brummer, R. J., Isolauri, E., Lochs, H., Morelli, L., Ockhuizen, T., Rowland, I. R., Schrenzenmeir, J., Stanton, C. and Verbeke, K. (2011) The design of probiotic studies to substantiate health claims. Gut Microbes, 2 (5). pp. 299-305. ISSN 1949-0984 doi: https://doi.org/10.4161/gmic.2.5.18002

Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Hutkins, R., Sanders, M. E., Prescott, S. L., Reimer, R. A., Salminen, S. J., Scott, K., Stanton, C., Swanson, K. S., Cani, P. D., Verbeke, K. and Reid, G. (2017) Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics. Nature Reviews in Gastroenterology and Hepatology, 14. pp. 491-502. ISSN 1759-5045 doi: https://doi.org/10.1038/nrgastro.2017.75

Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Scott, K. P., Rastall, R. A., Tuohy, K. M., Hotchkiss, A., Dubert-Ferrandon, A., Gareau, M., Murphy, E. F., Saulnier, D., Loh, G., Macfarlane, S., Delzenne, N., Ringel, Y., Kozianowski, G., Dickmann, R., Lenoir-Wijnkook, I., Walker, C. and Buddington, R. (2010) Dietary prebiotics: current status and new definition. Food Science and Technology Bulletin: Functional Foods, 7. pp. 1-19.

Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476, McCartney, A.L. and Rastall, R.A. (2005) Prebiotics and resistance to gastrointestinal infections. British Journal of Nutrition, 93 (S1). S31-S34. ISSN 0007-1145 doi: https://doi.org/10.1079/bjn20041343

Gibson, S.A.W. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (1988) A rapid method for determination of sulphate-reducing bacteria in human faeces. Letters in Applied Microbiology (7). pp. 33-35.

Girard, F., Frankel, G., Phillips, A. D., Cooley, W., Weyer, U., Dugdale, A. H. A., Woodward, M. J. and La Ragione, R. M. (2008) Interaction of enterohemorrhagic Escherichia coli O157 : H7 with mouse intestinal mucosa. FEMS Microbiology Letters, 283 (2). pp. 196-202. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.2008.01166.x

Givens, D. I. ORCID: https://orcid.org/0000-0002-6754-6935, Gibbs, R. A. ORCID: https://orcid.org/0000-0001-5017-7283, Rymer, C. ORCID: https://orcid.org/0000-0002-3535-4330 and Brown, R. H. (2011) Effect of intensive vs. free range production on the fat and fatty acid composition of whole birds and edible portions of retail chickens in the UK. Food Chemistry, 127 (4). pp. 1549-1554. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2011.02.016

Gomez, E., Tuohy, K.M., Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476, Klinder, A. and Costabile, A. (2010) In vitro evaluation of the fermentation properties and potential prebiotic activity of Agave fructans. Journal of Applied Microbiology, 108 (6). pp. 2114-2121. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2009.04617.x

Gougoulias, C., Sandaradura, S., Meng, X., Perz, A. C., Leeds, A. R. and Thomas, L. V. (2008) Changes in the intestinal microbiota after a short period of dietary over-indulgence, representative of a holiday or festival season. Food Science and Technology Bulletin: Functional Foods, 5 (5). pp. 51-59. ISSN 1476-2137

Grant, A. J., Farris, M., Alefounder, P., Williams, P. H., Woodward, M. J. and O'Connor, C. D. (2003) Co-ordination of pathogenicity island expression by the BipA GTPase in enteropathogenic Escherichia coli (EPEC). Molecular Microbiology, 48 (2). pp. 507-521. ISSN 0950-382X doi: https://doi.org/10.1046/j.1365-2958.2003.t01-1-03447.x

Greetham, H. L., Giffard, C., Hutson, R.A., Collins, M.D. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2002) Bacteriology of the Labrador dog gut: a cultural and genotypic approach. Journal of Applied Microbiology, 93 (4). pp. 640-646. ISSN 1364-5072 doi: https://doi.org/10.1046/j.1365-2672.2002.01724.x

Grimaldi, R., Cela, D., Swann, J. R., Vulevic, J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Tzortzis, G. and Costabile, A. (2017) In vitro fermentation of B-GOS: impact on faecal bacterial populations and metabolic activity in autistic and non-autistic children. FEMS Microbiology Ecology, 93 (2). fiw233. ISSN 1574-6941 doi: https://doi.org/10.1093/femsec/fiw233

Grimaldi, R., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Vulevic, J., Giallourou, N., Castro-Mejía, J. L., Hansen, L. H., Gibson, E. L., Nielsen, D. S. and Costabile, A. (2018) A prebiotic intervention study in children with autism spectrum disorders (ASDs). Microbiome, 6 (1). 133. ISSN 2049-2618 doi: https://doi.org/10.1186/s40168-018-0523-3

Grimaldi, R., Swann, J. R., Vulevic, J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Costabile, A. (2016) Fermentation properties and potential prebiotic activity of Bimuno® galacto-oligosaccharide (65 % galacto-oligosaccharide content) on in vitro gut microbiota parameters. British Journal of Nutrition, 116 (3). pp. 480-486. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114516002269

Guarner, F., Sanders, M. E., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Klaenhammer, T., Cabana, M., Scott, K., Reid, G., Delzenne, N. M., Fahey, G. and Hill, C. (2011) Probiotic and prebiotics claims in Europe: Seeking a clear roadmap. British Journal of Nutrition, 106 (11). pp. 1765-1767. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114511002248

Guergoletto, K. B., Costabile, A., Flores, G., Garcia, S. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2016) In vitro fermentation of juçara pulp (Euterpe edulis) by human colonic microbiota. Food Chemistry, 196. pp. 251-258. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2015.09.048

Guerra-Ordaz, A. A., González-Ortiz, G., La Ragione, R. M., Woodward, M., Collins, J. W., Pérez, J. F. and Martín-Orúe, S. M. (2014) Lactulose and Lactobacillus plantarum, a potential complementary synbiotic to control postweaning colibacillosis in piglets. Applied and Environmental Microbiology, 80 (16). pp. 4879-4886. ISSN 1098-5336 doi: https://doi.org/10.1128/AEM.00770-14

Guerra-Ordaz, A. A., Molist, F., Hermes, R. G., Gómez de Segura, A., La Ragione, R. M., Woodward, M. J., Tchorzewska, M. A., Collins, J. W., Pérez, J. F. and Martin-Orúe, S. M. (2013) Effect of inclusion of lactulose and Lactobacillus plantarum on the intestinal environment and performance of piglets at weaning. Animal Feed Science and Technology, 185 (3-4). pp. 160-168. ISSN 0377-8401 doi: https://doi.org/10.1016/j.anifeedsci.2013.07.009

Gunning, R. E., Wales, A. D., Pearson, G. R., Done, E., Cookson, A. L. and Woodward, M. J. (2001) Attaching and effacing lesions in the intestines of two calves associated with natural infection with Escherichia coli O26:H11. Veterinary Record, 148 (25). pp. 780-782. ISSN 0042-4900 doi: https://doi.org/10.1136/vr.148.25.780

Guo, Y., Harris, P., Kaur, A., Pastrana, L. and Jauregi, P. (2017) Characterisation of β-lactoglobulin nanoparticles and their binding to caffeine. Food Hydrocolloids, 71. pp. 85-93. ISSN 0268-005X doi: https://doi.org/10.1016/j.foodhyd.2017.04.027

Hamilton-Miller, J. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (1999) Efficacy studies of probiotics: a call for guidelines. British Journal of Nutrition (82). pp. 73-75.

Hamilton-Miller, J.M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Bruck, W.M. (2003) Some insights into the derivation and early uses of the word ‘probiotic'. British Journal of Nutrition, 90 (4). p. 845. ISSN 0007-1145 doi: https://doi.org/10.1079/BJN2003954

Harmsen, H.J.M., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Elfferich, P., Raangs, G.C., Wideboer-Veloo, A.C.M., Argaiz, A., Roberfroid, M.B. and Welling, G.W. (1999) Comparison of viable cell counts and fluorescent in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria. FEMS Microbiology Ecology (183). pp. 125-129.

Harris, S., Powers, S., Monteagudo, A., Kosik, O., Lovegrove, A., Shewry, P. and Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 (2020) Determination of the prebiotic activity of wheat arabinogalactan peptide (AGP) using batch culture fermentation. European Journal of Nutrition, 59. pp. 297-307. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-019-01908-7

Hartman, H. B., Fell, D. A., Rossell, S., Jensen, P. R., Woodward, M. J., Thorndahl, L., Jelsbak, L., Olsen, J. E., Raghunathan, A., Daefler, S. and Poolman, M. G. (2014) Identification of potential drug targets in Salmonella Typhimurium using metabolic modelling and experimental validation. Microbiology, 160 (6). pp. 1252-1266. ISSN 1350-0872 doi: https://doi.org/10.1099/mic.0.076091-0

Hatew, B., Pellikaan, W. F., Hendriks, W. H., Mueller-Harvey, I. and Stringano, E. (2011) Effects of condensed tannin extracts from sainfoin (Onobrychis viciifolia Scop) on rumen in vitro methane production and fermentation characteristics. Advances in Animal Biosciences, 2 (2). p. 526. ISSN 2040-4719 doi: http://journals.cambridge.org/action/displayIssue?decade=2010&jid=ABS&volumeId=2&issueId=02&iid=8351771

Hayward, M. R., AbuOan, M., La Ragione, R. M., Tworschevska, M., Cooley, W., Everest, D. J., Petrovska, L., Jansen, V. A. A. and Woodward, M. (2014) SPI-23 of S.Derby: role in adherence and invasion of porcine tissues. PLoS ONE, 9 (9). e107857. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0107857

Hayward, M. R., AbuOun, M., Woodward, M. J. and Jansen, V. A. A. (2015) Temperature and oxygen dependent metabolite utilization by Salmonella enterica Serovars Derby and Mbandaka. PLoS ONE, 10 (3). e0120450. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0120450

Hayward, M. R., Jansen, V. A. A. and Woodward, M. J. (2013) Comparative genomics of Salmonella enterica serovars Derby and Mbandaka, two prevalent serovars associated with different livestock species in the UK. BMC Genomics, 14 (1). p. 365. ISSN 1471-2164 doi: https://doi.org/10.1186/1471-2164-14-365

Hayward, M. R., Petrovska, L., Jansen, V. A. A. and Woodward, M. (2016) Population structure and associated phenotypes of Salmonella enterica serovars Derby and Mbandaka overlap with host range. BMC Microbiology, 16 (1). Article 15. ISSN 1471-2180 doi: https://doi.org/10.1186/s12866-016-0628-4

Heath, P. and Claus, S. (2011) Assessing hepatic metabolic changes during progressive colonization of germ-free mouse by 1H NMR spectroscopy. Journal of Visualized Experiments, 58. ISSN 1940-087X doi: https://doi.org/10.3791/3642

Hemrajani, C., Marches, O., Wiles, S., Girard, F., Dennis, A., Dziva, F., Best, A., Phillips, A. D., Berger, C. N., Mousnier, A., Crepin, V. F., Kruidenier, L., Woodward, M. J., Stevens, M. P., La Ragione, R. M., MacDonald, T. T. and Frankel, G. (2008) Role of NleH, a Type III Secreted Effector from Attaching and Effacing Pathogens, in Colonization of the Bovine, Ovine, and Murine Gut. Infection and Immunity, 76 (11). pp. 4804-4813. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.00742-08

Henrique-Bana, F. C., Wang, X., Costa, G. N., Spinosa, W. A., Miglioranza, L. H. S., Scorletti, E., Calder, P. C., Byrne, C. D. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2020) In vitro effects of Bifidobacterium lactis-based synbiotics on human faecal bacteria. Food Research International, 128. 108776. ISSN 0963-9969 doi: https://doi.org/10.1016/j.foodres.2019.108776

Hewinson, R. G., Griffiths, P. C., Bevan, B. J., Kirwan, S. E. S., Field, M. E., Woodward, M. J. and Dawson, M. (1997) Detection of Chlamydia psittaci DNA in avian clinical samples by polymerase chain reaction. Veterinary Microbiology, 54 (2). pp. 155-166. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(96)01268-0

Hidalgo, M., Oruna-Concha, M. J. ORCID: https://orcid.org/0000-0001-7916-1592, Kolida, S., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Kallithraka, S., Spencer, J. P. E. ORCID: https://orcid.org/0000-0003-2931-7274, Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and de Pascual-Teresa, S. (2012) Metabolism of anthocyanins by human gut microflora and their influence on gut bacterial growth. Journal of Agricultural and Food Chemistry, 60 (15). pp. 3882-3890. ISSN 0021-8561 doi: https://doi.org/10.1021/jf3002153

Hill, C., Guarner, F., Reid, G., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Merenstein, D. J., Pot, B., Morelli, L., Canani, R. B., Flint, H., Salminen, S., Calder, P. C. and Sanders, M. E. (2014) Expert consensus document: the International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic. Nature Reviews in Gastroenterology and Hepatology, 11 (8). pp. 506-514. ISSN 1759-5045 doi: https://doi.org/10.1038/nrgastro.2014.66

Hobden, M. R., Guérin-Deremaux, L., Rowland, I., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Kennedy, O. B. ORCID: https://orcid.org/0000-0003-3885-4872 (2015) Potential anti-obesogenic properties of non-digestible carbohydrates: specific focus on resistant dextrin. Proceedings of the Nutrition Society, 74 (3). pp. 258-267. ISSN 0029-6651 doi: https://doi.org/10.1017/S0029665115000087

Hobden, M. R., Martin-Morales, A., Guerin-Deremaux, L., Wils, D., Costabile, A., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Rowland, I., Kennedy, O. B. ORCID: https://orcid.org/0000-0003-3885-4872 and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2013) In Vitro Fermentation of NUTRIOSE® FB06, a wheat dextrin soluble fibre, in a continuous culture human colonic model system. PLoS ONE, 8 (10). e77128. doi: https://doi.org/10.1371/journal.pone.0077128

Holloway, A. C., Mueller-Harvey, I., Gould, S. W. J., Fielder, M. D., Naughton, D. P. and Kelly, A. F. (2012) The effect of copper(II), iron(II) sulphate and vitamin C combinations on the weak antimicrobial activity of (+)-catechin against Staphylococcus aureus and other microbes. Metallomics, 4. pp. 1280-1286. ISSN 1756-5901 doi: https://doi.org/10.1039/C2MT20143G

Holmes, E., Kinross, J., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Burcelin, R., Jia, W., Pettersen, S. and Nicholson, J. K. (2012) Therapeutic modulation of microbiota-host metabolic interactions. Science Translational Medicine, 4 (137). 137rv6. ISSN 1946-6234 doi: https://doi.org/10.1126/scitranslmed.3004244

Holmes, E., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Taylor-Robinson, S. D. and Nicholson, J. K. (2015) The promise of metabolic phenotyping in gastroenterology and hepatology. Nature Reviews in Gastroenterology and Hepatology, 12 (8). pp. 458-471. ISSN 1759-5045 doi: https://doi.org/10.1038/nrgastro.2015.114

Honda, H., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Farmer, S., Keller, D. and McCartney, A. L. (2011) Use of a continuous culture fermentation system to investigate the effect of GanedenBC30 (Bacillus coagulans GBI-30, 6086) supplementation on pathogen survival in the human gut microbiota. Anaerobe, 17 (1). pp. 36-42. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2010.12.006

Honda, H., Hoyles, L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Farmer, S., Keller, D. and McCartney, A. L. (2011) Impact of GanedenBC30 (Bacillus coagulans GBI-30, 6086) on population dynamics of the human gut microbiota in a continuous culture fermentation system. International Journal of Probiotics and Prebiotics, 6 (1). pp. 65-72. ISSN 1555-1431

Horasan Sagbasan, B., Williams, C. M. ORCID: https://orcid.org/0000-0003-4452-671X, Bell, L. ORCID: https://orcid.org/0000-0003-0677-021X, Barfoot, K. L. ORCID: https://orcid.org/0000-0002-2866-6467, Poveda, C. and Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 (2024) Inulin and freeze-dried blueberry intervention lead to changes in the microbiota and metabolites within in vitro studies and in cognitive function within a small pilot trial on healthy children. Microorganisms, 12 (7). 1501. ISSN 2076-2607 doi: https://doi.org/10.3390/microorganisms12071501

Hornsey, M., Betts, J. W., Mehat, J. W., Wareham, D. W., van Vliet, A. H. M., Woodward, M. J. and La Ragione, R. M. (2019) Characterization of a colistin-resistant Avian Pathogenic Escherichia coli ST69 isolate recovered from a broiler chicken in Germany. Journal of Medical Microbiology, 68. pp. 111-114. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.000882

Howarth, G. S., Butler, R. N., Salminen, S., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Donovan, S. M. (2012) Probiotics for optimal nutrition: from efficacy to guidelines. Advances in Nutrition, 3. pp. 720-722. ISSN 2156-5376 doi: https://doi.org/10.3945/an.112.002501

Howells, L. C., Whelan, A. O., Woodward, M. J. and Coldham, N. G. (2005) Simple and effective technical procedures for the packing and application of nanospray PicoFrit HPLC columns for proteomic analyses. Proteomics, 5 (15). pp. 3864-3867. ISSN 1615-9853 doi: https://doi.org/10.1002/pmic.200401259

Hoyles, L. and McCartney, A. L. (2009) What do we mean when we refer to Bacteroidetes populations in the human gastrointestinal microbiota? FEMS Microbiology Letters, 299 (2). pp. 175-183. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.2009.01741.x

Hoyles, L., Clear, J. A. and McCartney, A. L. (2013) Use of denaturing gradient gel electrophoresis to detect Actinobacteria associated with the human faecal microbiota. Anaerobe, 22. pp. 90-96. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2013.06.001

Hoyles, L., Collins, M.D., Falsenz, E., Nikolaitchouk, N. and McCartney, A.L. (2004) Transfer of members of the genus Falcivibrio to the genus Mobiluncus, and emended description of the genus Mobiluncus. Systematic and Applied Microbiology, 27 (1). pp. 72-83. ISSN 0723-2020 doi: https://doi.org/10.1078/0723-2020-00260

Hoyles, L., Falsen, E., Foster, G. and Collins, M. D. (2002) Actinomyces coleocanis sp. nov., from the vagina of a dog. International Journal of Systematic and Evolutionary Microbiology, 52 (4). pp. 1201-1203. ISSN 1466-5034 doi: https://doi.org/10.1099/ijs.0.01934-0

Hoyles, L., Falsen, E., Foster, G., Pascual, C., Greko, C. and Collins, M. D. (2000) Actinomyces canis sp. nov., isolated from dogs. International Journal of Systematic and Evolutionary Microbiology, 50 (4). pp. 1547-1551. ISSN 1466-5026

Hoyles, L., Falsen, E., Foster, G., Rogerson, F. and Collins, M. D. (2002) Arcanobacterium hippocoleae sp. nov., from the vagina of a horse. International Journal of Systematic and Evolutionary Microbiology, 52 (2). pp. 617-619. ISSN 1466-5034

Hoyles, L., Falsen, E., Holmström, G., Persson, A., Sjödén, B. and Collins, M. D. (2001) Actinomyces suimastitidis sp. nov., isolated from pig mastitis. International Journal of Systematic and Evolutionary Microbiology, 51 (4). pp. 1323-1326. ISSN 1466-5034

Hoyles, L., Falsen, E., Pascual, C., Sjödén, B., Foster, G., Henderson, D. and Collins, M. D. (2001) Actinomyces catuli sp. nov., from dogs. International Journal of Systematic and Evolutionary Microbiology, 51 (2). pp. 679-682. ISSN 1466-5034

Hoyles, L., Foster, G., Falsen, E. and Collins, M. D. (2000) Characterization of a Gemella-like organism isolated from an abscess of a rabbit: description of Gemella cunicula sp. nov. International Journal of Systematic and Evolutionary Microbiology, 50 (6). pp. 2037-2041. ISSN 1466-5026

Hoyles, L., Foster, G., Falsen, E., Thomson, L. F. and Collins, M. D. (2001) Facklamia miroungae sp. nov., from a juvenile southern elephant seal (Mirounga leonina). International Journal of Systematic and Evolutionary Microbiology, 51 (4). pp. 1401-1403. ISSN 1466-5034

Hoyles, L., Honda, H., Logan, N. A., Halket, G., La Ragione, R. M. and McCartney, A. L. (2012) Recognition of greater diversity of Bacillus species and related bacteria in human faeces. Research in Microbiology, 163 (1). pp. 3-13. ISSN 0923-2508 doi: https://doi.org/10.1016/j.resmic.2011.10.004

Hoyles, L., Inganäs, E., Falsen, E., Drancourt, M., Weiss, N., McCartney, A. L. and Collins, M. D. (2002) Bifidobacterium scardovii sp. nov., from human sources. International Journal of Systematic and Evolutionary Microbiology, 52 (3). pp. 995-999. ISSN 1466-5034 doi: https://doi.org/10.1099/ijs.0.02065-0

Hoyles, L., Jiménez-Pranteda, M. L., Chilloux, J., Brial, F., Myridakis, A., Aranias, T., Magnan, C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Sanderson, J. D., Nicholson, J. K., Gauguier, D., McCartney, A. L. and Dumas, M.-E. (2018) Metabolic retroconversion of trimethylamine N-oxide and the gut microbiota. Microbiome, 6. 73. ISSN 2049-2618 doi: https://doi.org/10.1186/s40168-018-0461-0

Hoyles, L., Lawson, P. A., Foster, G., Falsen, E., Ohlén, M., Grainger, J. M. and Collins, M. D. (2000) Vagococcus fessus sp. nov., isolated from a seal and a harbour porpoise. International Journal of Systematic and Evolutionary Microbiology, 50 (3). pp. 1151-1154. ISSN 1466-5026

Hoyles, L., McCartney, A. L., Neve, H., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Sanderson, J. D., Heller, K. J. and van Sinderen, D. (2014) Characterization of virus-like particles associated with the human faecal and caecal microbiota. Research in Microbiology, 165 (10). pp. 803-812. ISSN 0923-2508 doi: https://doi.org/10.1016/j.resmic.2014.10.006

Hoyles, L., Murphy, J., Neve, H., Heller, K. J., Turton, J. F., Mahony, J., Sanderson, J. D., Hudspith, B., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, McCartney, A. L. and van Sinderen, D. (2015) Klebsiella pneumoniae subsp. pneumoniae–bacteriophage combination from the caecal effluent of a healthy woman. PeerJ, 3. e1061. ISSN 2167-8359 doi: https://doi.org/10.7717/peerj.1061

Hoyles, L., Ortman, K., Cardew, S., Foster, G., Rogerson, F. and Falsen, E. (2013) Corynebacterium uterequi sp. nov., a non-lipophilic bacterium isolated from urogenital samples from horses. Veterinary Microbiology, 165 (3-4). pp. 469-474. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2013.03.025

Hoyles, L., Pascual, C., Falsen, E., Foster, G., Grainger, J. M. and Collins, M. D. (2001) Actinomyces marimammalium sp. nov., from marine mammals. International Journal of Systematic and Evolutionary Microbiology, 51 (1). pp. 151-156. ISSN 1466-5034

Huaman, J.-W., Mego, M., Manichanh, C., Cañellas, N., Cañueto, D., Segurola, H., Jansana, M., Malalgelada, C., Accarino, A., Vulevic, J., Tzortzis, G., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Saperas, E., Guarner, F. and Azpiroz, F. (2018) Effects of prebiotics vs a diet low in FODMAPS in patients with functional gut disorder. Gastroenterology, 155 (4). pp. 1004-1007. ISSN 0016-5085 doi: https://doi.org/10.1053/j.gastro.2018.06.045

Hudspith, B.N., Rouzard, G., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rayment, N., Petrovska, L., Bruce, K., Sanderson, J.D. and Brostoff, J. (2006) Probiotic bacteria inhibit epithelial cell IL-8 production: role of toll-like receptor engagement. Gut, 55 (Suppl 2). a38-a38. ISSN 1468-3288 (British Society of Gastroenterology Annual Meeting, Birmingham, 20 to 23 March, 2006)

Huehn, S., La Ragione, R. M., Anjum, M., Saunders, M., Woodward, M. J., Bunge, C., Helmuth, R., Hauser, E., Guerra, B., Beutlich, J., Brisabois, A., Peters, T., Svensson, L., Madajczak, G., Litrup, E., Imre, A., Herrera-Leon, S., Mevius, D., Newell, D. G. and Malorny, B. (2010) Virulotyping and antimicrobial resistance typing of salmonella enterica serovars relevant to human health in Europe. Foodborne Pathogens and Disease, 7 (5). pp. 523-535. ISSN 1535-3141 doi: https://doi.org/10.1089/fpd.2009.0447

Humphreys, S., Rowley, G., Stevenson, A., Anjum, M. F., Woodward, M. J., Gilbert, S., Kormanec, J. and Roberts, M. (2004) Role of the two-component regulator CpxAR in the virulence of Salmonella entetica serotype typhimurium. Infection and Immunity, 72 (8). pp. 4654-4661. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.72.8.4654-4661.2004

Iddrisu, I., Monteagudo-Mera, A., Poveda, C., Shahzad, M., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686 (2024) A review of the effect of iron supplementation on the gut microbiota of children in developing countries and the impact of prebiotics. Nutrition Research Reviews. ISSN 1475-2700 doi: https://doi.org/10.1017/S0954422424000118

Inman, C., Singha, S., Lewis, M., Bradley, B., Stokes, C. and Bailey, M. (2010) Dendritic cells interact with CD4 T cells in intestinal mucosa. Journal of Leukocyte Biology, 88 (3). pp. 571-578. ISSN 1938-3673 doi: https://doi.org/10.1189/jlb.0310161

Inness, V. L., Khoo, C., Gross, K. L., Hoyles, L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and McCartney, A. L. (2011) Use of static batch culture systems to investigate the fermentation effects of selected oligosaccharides and fibres by the canine faecal microbiota. International Journal of Probiotics and Prebiotics, 6 (1). pp. 57-64. ISSN 1555-1431

Inness, V.L., Khoo, C., Gross, K.L., Hoyles, L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and McCartney, A. L. (2013) An assessment of the prebiotic potential of single and blended substrates in anaerobic in vitro batch culture fermentations using canine faecal samples as inocula. International Journal of Probiotics and Prebiotics, 8 (4). p. 133. ISSN 1555-1431

Inness, V.L., McCartney, A.L., Khoo, C., Gross, K.L. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2007) Molecular characterisation of the gut microflora of healthy and inflammatory bowel disease cats using fluorescence in situ hybridisation with special reference to Desulfovibrio spp. Journal of Animal Physiology and Animal Nutrition, 91 (1-2). pp. 48-53. ISSN 0931-2439 doi: https://doi.org/10.1111/j.1439-0396.2006.00640.x

Jackson, F., Georgakopoulou, N., Kaluarachchi, M., Kyriakides, M., Andreas, N., Przysiezna, N., Hyde, M. J., Modi, N., Nicholson, J. K., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 and Holmes, E. (2016) Development of a pipeline for exploratory metabolic profiling of infant urine. Journal of Proteome Research, 15 (9). pp. 3432-3440. ISSN 1535-3907 doi: https://doi.org/10.1021/acs.jproteome.6b00234

Jackson, P. P. J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Theis, S., Van Harsselaar, J. and Rastall, R. A. ORCID: https://orcid.org/0000-0003-1775-5226 (2023) Effects of food matrix on the prebiotic efficacy of inulin-type fructans: a randomised trial. Beneficial Microbes, 14 (4). pp. 317-334. ISSN 1876-2891 doi: https://doi.org/10.1163/18762891-20220120

Jackson, P. P. J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, van Harsselaar, J., Theis, S. and Rastall, R. A. (2023) Oligofructose, 2'fucosyllactose and β-glucan in combination induce specific changes in microbial composition and short-chain fatty acid production compared to sole supplementation. Journal of Applied Microbiology, 134 (2). lxac069. ISSN 1364-5072 doi: https://doi.org/10.1093/jambio/lxac069

Jackson, P. P. J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 and Rastall, R. A. (2022) Determining the metabolic fate of human milk oligosaccharides: it may just be more complex than you think? Gut Microbiome, 3. e9. ISSN 2632-2897 doi: https://doi.org/10.1017/gmb.2022.8

Jackson, P. P. J. ORCID: https://orcid.org/0000-0003-0098-4719, Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 and Rastall, R. A. (2023) Inulin‐type fructans and short‐chain fructooligosaccharides—their role within the food industry as fat and sugar replacers and texture modifiers—what needs to be considered! Food Science & Nutrition, 11 (1). pp. 17-38. ISSN 2048-7177 doi: https://doi.org/10.1002/fsn3.3040

Jackson, P. P. J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Williams, C. M. ORCID: https://orcid.org/0000-0003-4452-671X, Theis, S., van Harsselaar, J. and Rastall, R. A. (2023) Inulin-type fructans and 2'fucosyllactose alter both microbial composition and appear to alleviate stress-induced mood state in a working population compared to placebo (maltodextrin): the EFFICAD Trial, a randomized, controlled trial. The American Journal of Clinical Nutrition, 118 (5). pp. 938-955. ISSN 1938-3207 doi: https://doi.org/10.1016/j.ajcnut.2023.08.016

James, D., Poveda, C., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Elmore, J. S. ORCID: https://orcid.org/0000-0002-2685-1773, Linden, B., Gibson, J., Griffin, B. A., Robertson, M. D. and Lewis, M. C. (2024) Do high-protein diets have the potential to reduce gut barrier function in a sex-dependent manner? European Journal of Nutrition, 63 (6). pp. 2035-2054. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-024-03407-w

Jauregi, P., Guo, Y. and Adeloye, J. B. (2021) Whey proteins-polyphenols interactions can be exploited to reduce astringency or increase solubility and stability of bioactives in foods. Food Research International, 141. 110019. ISSN 0963-9969 doi: https://doi.org/10.1016/j.foodres.2020.110019

Jauregi, P., Mitchell, G.R. and Varley, J. (2000) Colloidal gas aphrons (CGA): dispersion and structural features. AIChE Journal, 46 (1). pp. 24-36. ISSN 0001-1541 doi: https://doi.org/10.1002/aic.690460105

Jia, J., Frantz, N., Khoo, C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A. and McCartney, A. L. (2011) Investigation of the faecal microbiota of geriatric cats. Letters in Applied Microbiology, 53 (3). pp. 288-293. ISSN 1472-765X doi: https://doi.org/10.1111/j.1472-765X.2011.03105.x

Jia, J., Frantz, N., Khoo, C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A. and McCartney, A. L. (2011) Investigation of the faecal microbiota of kittens: monitoring bacterial succession and effect of diet. FEMS Microbiology Ecology, 78 (2). pp. 395-404. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2011.01172.x

Jia, J., Frantz, N., Khoo, C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A. and McCartney, A. L. (2010) Investigation of the faecal microbiota associated with canine chronic diarrhoea. FEMS Microbiology Ecology, 71 (2). pp. 304-12. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2009.00812.x

Jiménez-Pranteda, M. L., Aguilera, M., McCartney, A. L., Hoyles, L., Jiménez-Valera, M., Náder-Marcías, M. E., Ramos-Cormenzana, A. and Monteoliva-Sánchez, M. (2012) Investigation of the impact of feeding Lactobacillus plantarum CRL 1815 encapsulated in microbially derived polymers on the rat faecal microbiota. Journal of Applied Microbiology, 113 (2). pp. 399-410. ISSN 1365-2672 doi: https://doi.org/10.1111/j.1365-2672.2012.05343.x

Johnson, L. P., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Psichas, A., Frost, G. S., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Barraclough, T. G. (2015) Prebiotics modulate the effects of antibiotics on gut microbial diversity and functioning in vitro. Nutrients, 7 (6). pp. 4480-4497. ISSN 2072-6643 doi: https://doi.org/10.3390/nu7064480

Julien, L. A., Fau, C., Baron, F., Bonnassie, S., Guérin-Dubiard, C., Nau, F., Gautier, M., Karatzas, K.-A., Jan, S. and Andrews, S. ORCID: https://orcid.org/0000-0003-4295-2686 (2020) The three lipocalins of egg-white: only Ex-FABP inhibits siderophore-dependent iron sequestration by Salmonella Enteritidis. Frontiers in Microbiology, 11. 913. ISSN 1664-302X doi: https://doi.org/10.3389/fmicb.2020.00913

Kaldis, F., Cysneiros, D., Day, J., Karatzas, K.-A. G. and Chatzifragkou, A. ORCID: https://orcid.org/0000-0002-9255-7871 (2020) Anaerobic digestion of steam-exploded wheat straw and co-digestion strategies for enhanced biogas production. Applied Sciences, 10 (22). 8284. ISSN 2076-3417 doi: https://doi.org/10.3390/app10228284

Kandzija, N., Zhang, W., Motta-Mejia, C., Mhlomi, V., McGowan-Downey, J., James, T., Cerdeira, A. S., Tannetta, D., Sargent, I., Redman, C. W., Bastie, C. C. and Vatish, M. (2019) Placental extracellular vesicles express active dipeptidyl peptidase IV; levels are increased in gestational diabetes mellitus. Journal of extracellular vesicles, 8 (1). 1617000. ISSN 2001-3078 doi: https://doi.org/10.1080/20013078.2019.1617000

Karatzas, A.K., Kets, E.P.W., Smid, E.J. and Bennik, M.H.J. (2001) The combined action of carvacrol and high hydrostatic pressure on Listeria monocytogenes Scott A. Journal of Applied Microbiology, 90 (3). pp. 463-469. ISSN 1365-2672 doi: https://doi.org/10.1046/j.1365-2672.2001.01266.x

Karatzas, K. A. G. and Bennik, M. H. J. (2002) Characterization of a Listeria monocytogenes Scott A isolate with high tolerance towards high hydrostatic pressure. Applied and Environmental Microbiology, 68 (7). pp. 3183-3189. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.68.7.3183–3189.2002

Karatzas, K. A. G., Lemmens - den Toom, N. A., Tassou, C. C., van Leeuwen, W. and van Belkum, A. (2021) Molecular characterization of piezotolerant and stress resistant mutants of Staphylococcus aureus. Journal of Applied Microbiology, 130 (3). pp. 901-912. ISSN 1364-5072 doi: https://doi.org/10.1111/jam.14832

Karatzas, K. A. G., Valdramidis, V. P. and Wells-Bennik, M. H. J. (2005) Contingency locus in ctsR of Listeria monocytogenes Scott A: a strategy for occurrence of abundant piezotolerant isolates within clonal populations. Applied and Environmental Microbiology, 71 (12). pp. 8390-8396. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.71.12.8390-8396.2005

Karatzas, K. A. G., Webber, M. A., Jorgensen, F., Woodward, M. J., Piddock, L. J. V. and Humphrey, T. J. (2007) Prolonged treatment of Salmonella enterica serovar Typhimurium with commercial disinfectants selects for multiple antibiotic resistance, increased efflux and reduced invasiveness. Journal of Antimicrobial Chemotherapy, 60 (5). pp. 947-955. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkm314

Karatzas, K.-A., Bennik, M. H. J., Smid, E. J. and Kets, E. P. W. (2000) Combined action of S-carvone and mild heat treatment on Listeria monocytogenes Scott A. Journal of Applied Microbiology, 89 (2). pp. 296-301. ISSN 1364-5072 doi: https://doi.org/10.1046/j.1365-2672.2000.01110.x

Karatzas, K.-A., Wouters, J. A., Gahan, C. G. M. , Hill, C. , Tjakko, A. and Bennik, M. H. J. (2003) The CtsR regulator of Listeria monocytogenes contains a variant glycine repeat region that affects piezotolerance, stress resistance, motility and virulence. Molecular Microbiology, 49 (5). pp. 1227-1238. ISSN 0950-382X doi: https://doi.org/10.1046/j.1365-2958.2003.03636.x

Karatzas, K.-A., Zervos, A., Tassou, C. C., Mallidis, C. G. and Humphrey, T. J. (2007) Piezotolerant small-colony variants with increased thermotolerance, antibiotic susceptibility, and low invasiveness in a clonal Staphylococcus aureus population. Applied and Environmental Microbiology, 73 (6). pp. 1873-1881. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.01801-06

Karatzas, K.-A. G., Breannan, O., Heavin, S., Morrisey, J. and O'Byrne, C. O. (2010) Intracellular accumulation of high levels of gamma-aminobutyrate by Listeria monocytogenes 10403S in response to low pH: uncoupling of gamma-aminobutyrate synthesis from efflux in a chemically defined medium. Applied and Environmental Microbiology, 76 (11). pp. 3529-3537. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.03063-09

Karatzas, K.-A. G., Hocking, P. M., Jørgensen, F., Mattick, K., Leach, S. and Humphrey, T. J. (2008) Effects of repeated cycles of acid challenge and growth on the phenotype and virulence of Salmonella enterica. Journal of Applied Microbiology, 105 (5). pp. 1640-1648. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2008.03909.x

Karatzas, K.-A. G., Randall, L. P., Webber, M., Piddock, L. J. V., Humphrey, T. J., Woodward, M. J. and Coldham, N. G. (2008) Phenotypic and proteomic characterization of multiply antibiotic-resistant variants of Salmonella entetica serovar typhimurium selected following exposure to disinfectants. Applied and Environmental Microbiology, 74 (5). pp. 1508-1516. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.01931-07

Karatzas, K.-A. G., Suur, L. and O'Byrne, C. P. (2012) Characterisation of the intracellular-glutamate decarboxylase system (GAD): analysis of its function, transcription and role in the acid resistance of various strains of Listeria monocytogenes. Applied and Environmental Microbiology, 78 (10). pp. 3571-3579. ISSN 1098-5336 doi: https://doi.org/10.1128/​AEM.00227-12

Kauko, T., Haukka, K., AbuOun, M., Anjum, M. F., Woodward, M. J. and Siitonen, A. (2010) Phenotype MicroArray (TM) in the metabolic characterisation of Salmonella serotypes Agona, Enteritidis, Give, Hvittingfoss, Infantis, Newport and Typhimurium. European Journal of Clinical Microbiology & Infectious Diseases, 29 (3). pp. 311-317. ISSN 0934-9723 doi: https://doi.org/10.1007/s10096-009-0859-5

Kean, I. R. L., Wagner, J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, De Goffau, M., Thurston, S., Clark, J. A., White, D. K., Ridout, J., Agrawal, S., Kayani, R., O’Donnell, R., Ramnarayan, P., Peters, M. J., Klein, N., Holmes, E., Parkhill, J., Baker, S. and Pathan, N. (2022) Profiling gut microbiota and bile acid metabolism in critically ill children. Scientific Reports, 12 (1). 10432. ISSN 2045-2322 doi: https://doi.org/10.1038/s41598-022-13640-0

Keller, D., Farmer, S., McCartney, A. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2010) Bacillus coagulans as a probiotic. Food Science and Technology Bulletin: Functional Foods. ISSN 1476-2137

Kelly, S.M., Pitcher, M.C.L., Farmery, S.M. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (1994) Isolation of Helicobacter pylori from feces of patients with dyspepsia in the United Kingdom. Gastroenterology (107). pp. 1671-1674.

Kennedy, J. M. ORCID: https://orcid.org/0000-0001-9335-0808, De Silva, A., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2023) A review on the use of prebiotics in ulcerative colitis. Trends in Microbiology. ISSN 1878-4380 doi: https://doi.org/10.1016/j.tim.2023.11.007

Kennedy, J. M. ORCID: https://orcid.org/0000-0001-9335-0808, De Silva, A., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Poveda, C. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2024) Comparison of prebiotic candidates in ulcerative colitis using an in vitro fermentation model. Journal of Applied Microbiology, 135 (2). lxae034. ISSN 1365-2672 doi: https://doi.org/10.1093/jambio/lxae034

Khalil, N., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Tuohy, K. M. and Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686 (2014) In vitro batch cultures of gut microbiota from healthy and ulcerative colitis (UC) subjects suggest that sulphate-reducing bacteria levels are raised in UC and by a protein-rich diet. International Journal of Food Science and Nutrition, 65 (1). pp. 79-88. ISSN 1465-3478 doi: https://doi.org/10.3109/09637486.2013.825700

Kilian, S., Kritzinger, S., Rycroft, C., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and James, d. P. (2002) The effect of the novel bifidogenic trisaccharide, neokestose, on the human colonic microbiota. World Journal of Microbiology and Biotechnology, 18 (7). pp. 637-644. ISSN 0959-3993 doi: https://doi.org/10.1023/A:1016808015630

Kirjavainen, P. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (1999) Healthy gut microflora and allergy: factors influencing the development of the microflora. Annals of Medicine (31). pp. 288-292.

Kirjavainen, P.V., Apostolou, E., Arvola, T., Salminen, S.J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Isolauri, E. (2001) Characterizing the composition of intestinal microflora as a prospective treatment target in infant allergic disease. FEMS Immunology and Medical Microbiology, 32 (1). pp. 1-7. ISSN 0928-8244 doi: https://doi.org/10.1016/S0928-8244(01)00272-3

Kitsiou, M., Purk, L., Gutierrez-Merino, J., Karatzas, K.-A., Klymenko, O. V. and Velliou, E. (2023) A systematic quantitative determination of the antimicrobial efficacy of grape seed extract against foodborne bacterial pathogens. Foods, 12 (5). 929. ISSN 2304-8158 doi: https://doi.org/10.3390/foods12050929

Kitsiou, M. ORCID: https://orcid.org/0009-0002-1595-7203, Wantock, T., Sandison, G., Harle, T., Gutierrez-Merino, J., Klymenko, O. V., Karatzas, K. A. ORCID: https://orcid.org/0000-0002-5533-4038 and Velliou, E. ORCID: https://orcid.org/0000-0003-3313-4446 (2024) Determination of the combined effect of grape seed extract and cold atmospheric plasma on foodborne pathogens and their environmental stress knockout mutants. Applied and Environmental Microbiology. ISSN 1098-5336 doi: https://doi.org/10.1128/aem.00177-24

Klootwijk, E. D., Reichold, M., Helip-Wooley, A., Tolaymat, A., Broeker, C., Robinette, S. L., Reinders, J., Peindl, D., Renner, K., Eberhart, K., Assmann, N., Oefner, P. J., Dettmer, K., Sterner, C., Schroeder, J., Zorger, N., Witzgall, R., Reinhold, S. W., Stanescu, H. C., Bockenhauer, D., Jaureguiberry, G., Courtneidge, H., Hall, A. M., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Holmes, E., Nicholson, J. K., O'Brien, K., Bernardini, I., Krasnewich, D., Arcos-Burgos, M., Izumi, Y., Nonoguchi, H., Jia, Y., Reddy, J. K., Ilyas, M., Unwin, R. J., Gahl, W. A., Warth, R. and Kleta, R. (2014) Mistargeting of peroxisomal EHHADH and inherited renal Fanconi's syndrome. The New England Journal of Medicine, 370 (2). pp. 129-138. ISSN 1533-4406 doi: https://doi.org/10.1056/NEJMoa1307581

Klotz, B., Manas, P. and Mackey, B. M. (2010) The relationship between membrane damage, release of protein and loss of viability in Escherichia coli exposed to high hydrostatic pressure. International Journal of Food Microbiology, 137 (2-3). pp. 214-220. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2009.11.020

Kok, M. G. M., Ruijken, M. A., Swann, J. R., Wilson, I. D., Somsen, G. W. and de Jong, G. J. (2013) Anionic metabolic profiling of urine from antibiotic-treated rats by capillary electrophoresis–mass spectrometry. Analytical and Bioanalytical Chemistry, 405 (8). pp. 2585-2594. ISSN 1618-2650 doi: https://doi.org/10.1007/s00216-012-6701-4

Kok, M. G.M., Swann, J. R., Wilson, I. D., Somsen, G. W. and de Jong, G. J. (2014) Hydrophilic interaction chromatography–mass spectrometry for anionic metabolic profiling of urine from antibiotic-treated rats. Journal of Pharmaceutical and Biomedical Analysis, 92. pp. 98-104. ISSN 0731-7085 doi: https://doi.org/10.1016/j.jpba.2014.01.008

Kolida, S. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2011) Synbiotics in health and disease. Food Science and Technology, 2. pp. 373-393.

Kolida, S., Tuohy, K. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2002) Prebiotic effects of inulin and oligofructose. British Journal of Nutrition, 87. S193-S197. ISSN 0007-1145 doi: https://doi.org/10.1079/BJN/2002537 (supplement S2)

Kolida, S., Tuohy, K.M. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2000) The human gut flora in nutrition and approaches for its dietary modulation. BNF Nutrition Foundation Nutrition Bulletins, 25. pp. 223-231.

Kopsahelis, A., Kourmentza, C., Zafiri, C. and Kornaros, M. (2019) Life cycle assessment (LCA) of end-of-life dairy products (EoL-DPs) valorization via anaerobic co-digestion with agro-industrial wastes for biogas production. Journal of Chemical Technology and Biotechnology, 94 (11). pp. 3687-3697. ISSN 0268-2575 doi: https://doi.org/10.1002/jctb.6174

Kourkoutas, Y., Chorianopoulos, N., Karatzas, K. A. G. and Banat, I. M. (2016) Bioactive natural products 2016. BioMed Research International, 2016. 9749305. ISSN 2314-6141 doi: https://doi.org/10.1155/2016/9749305

Kourkoutas, Y., Chorianopoulos, N., Nisiotou, A., Valdramidis, V. P. and Karatzas, K. A. G. (2016) Editorial. BioMed research international, 2016. pp. 1-2. ISSN 2314-6133 doi: https://doi.org/10.1155/2016/9160375

Kourmentza, K., Gromada, X., Michael, N., Degraeve, C., Vanier, G., Ravallec, R., Coutte, F., Karatzas, K.-A. and Jauregi, P. (2021) Antimicrobial activity of lipopeptide biosurfactants against foodborne pathogen and food spoilage microorganisms and their cytotoxicity. Frontiers in Microbiology, 11. 561060. ISSN 1664-302X doi: https://doi.org/10.3389/fmicb.2020.561060

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