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The automation of nested clade phylogeographic analysis

Panchal, M. (2007) The automation of nested clade phylogeographic analysis. Bioinformatics, 23 (4). pp. 509-510. ISSN 1367-4803

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To link to this item DOI: 10.1093/bioinformatics/btl614

Abstract/Summary

ANeCA is a fully automated implementation of Nested Clade Phylogeographic Analysis. This was originally developed by Templeton and colleagues, and has been used to infer, from the pattern of gene sequence polymorphisms in a geographically structured population, the historical demographic processes that have shaped its evolution. Until now it has been necessary to perform large parts of the procedure manually. We provide a program that will take data in Nexus sequential format, and directly output a set of inferences. The software also includes TCS v1.18 and GeoDis v2.2 as part of automation.

Item Type:Article
Refereed:Yes
Divisions:Faculty of Life Sciences > School of Biological Sciences
ID Code:10067
Uncontrolled Keywords:STATISTICAL PHYLOGEOGRAPHY, GEOGRAPHICAL-DISTRIBUTION, CLADISTIC-ANALYSIS, COMPUTER-PROGRAM, HAPLOTYPES

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