• Angaji SA, Septiningsih EM, Mackill DJ and Ismail AM. (2010) QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.). Euphytica 172, 159-168.
• Bailey-Serres J, Fukao T, Ronald P, Ismail A, Heuer S and Mackill D. (2010) Submergence tolerant rice: Sub1’s journey from landrace to modern cultivar. Rice 3, 138-147.
• Bewley JD and Black M. (1994) Seeds: physiology of development and germination, 2nd Edition. New York, Plenum Press.
• Bewley JD, Bradford KJ, Hilhorst HWM and Nonogaki H. (2013) Seeds: physiology of development, germination and dormancy, 3rd Edition. New York: Springer.
• Burgass RW and Powell AA. (1984) Evidence for repair processes in the invigoration of seeds by hydration. Annals of Botany 53, 753-757.
• Butler LH, Hay FR, Ellis RH and Smith RD. (2009a) Post-abscission, pre-dispersal seeds of Digitalis purpurea remain in a developmental state that is not terminated by desiccation ex planta. Annals of Botany 103, 785-794.
• Butler LH, Hay FR, Ellis RH, Smith RD and Murray TB. (2009b) Priming and re-drying improve the survival of mature seeds of Digitalis purpurea during storage. Annals of Botany 103, 1261-1270.
• Chang TT. (1991) Findings from a 28-year seed viability experiment. International Rice Research Newsletter 16, 5-6.
• Dar MH, Janvry de A, Emerick K, Raitzer D and Sadoulet E. (2013) Flood-tolerant rice reduces yield variability and raises expected yield, differentially benefitting socially disadvantaged groups. Scientific Reports 3, 1-8.
• Das KK, Panda D, Sarkar RK, Reddy JN and Ismail AM. (2009) Submergence tolerance in relation to variable floodwater conditions in rice. Environmental and Experimental Botany 66, 425-434.
• Demir I and Ellis RH. (1992) Development of pepper (Capsicum annuum L.) seed quality. Annals of Applied Biology 121, 385-399.
• Derera NF. (1989) The effect of preharvest rain: effect on grower, pp. 2-5 in Derera, N.F. (Ed.) Preharvest field sprouting in cereals. Boca Raton, Florida, CRC Press.
• Devender-Reddy M and Mittra BN. (1985) Effect of complete plant submergence at different growth stages on grain yield, yield components and nutrient content of rice. Plant and Soil 86, 379-386.
• Ellis RH. (2011) Rice seed quality development and temperature during late development and maturation. Seed Science Research 21, 95-101.
• Ellis RH, Hong TD and Roberts EH. (1983) Safe procedures for the removal of rice seed dormancy. Seed Science and Technology 11, 77-112.
• Ellis RH, Hong TD and Jackson MT. (1993) Seed production environment, time of harvest, and the potential longevity of seeds of three cultivars of rice (Oryza sativa L.). Annals of Botany 72, 583-590.
• Ellis RH and Hong TD. (1994) Desiccation tolerance and potential longevity of developing seeds of rice (Oryza sativa L.). Annals of Botany 73, 501-506.
• Ellis RH and Hong TD. (2007) Seed longevity - moisture content relationships in hermetic and open storage. Seed Science and Technology 35, 423-431.
• Ellis RH and Roberts EH. (1980) Improved equations for the prediction of seed longevity. Annals of Botany 45, 13-30.
• Ellis RH and Roberts EH. (1981) The quantification of ageing and survival in orthodox seeds. Seed Science and Technology 9, 373-409.
• Ellis RH and Yadav G. (2016) Effect of simulated rainfall during wheat seed development and maturation on subsequent seed longevity is reversible. Seed Science Research 26, 67-76.\
• FAO/IPGRI (1994) Genebank standards. Rome, Food and Agriculture Organisation of the United Nations/International Plant Genetic Resources Institute.
• Footitt S and Cohn MA. (1995) Seed dormancy in red rice (Oryza sativa). IX. Embryo fructose-2,6-bisphosphate during dormancy breaking and subsequent germination. Plant Physiology 107, 1365-1370.
• Fukao T, Xu K, Ronald PC and Bailey-Serres J. (2006) A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice. The Plant Cell 18, 2021-2034.
• Fukao T, Harris T and Bailey-Serres J. (2009) Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice. Annals of Botany 103, 143-150.
• Gelin JR, Elias EM and Kianian SF. (2006) Evaluation of two durum wheat (Triticum turgidum L.) crossed for pre-harvest sprouting resistance. Field Crop Research 97, 188-196.
• Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H, Matsuoka M, Mori H and Ashikari M. (2009) The ethylene response factors Snorkel1 and Snorkel2 allow rice to adapt to deep water. Nature 460, 1026-1030.
• Heydecker W and Gibbins BM. (1978) The 'priming' of seeds. Acta Horticulturae 83, 213-23.
• Heydecker W, Higgins J and Gulliver RL. (1973) Accelerated germination by osmotic seed treatment. Nature 246, 42-44.
• Hilhorst HWM. (1995) A critical update on seed dormancy. I. Primary dormancy. Seed Science Research 5, 61-73.
• Hong TD and Ellis RH. (1992) The survival of germinating orthodox seeds after desiccation and hermetic storage. Journal of Experimental Botany 43, 239-247.
• IPCC (2013) Summary for policymakers, pp. 1-27 in Stocker TF; Qin D; Plattner G-K; Tignor M; Allen SK; Boschung J; Nauels A; Xia Y; Bex V; Midgley PM (Eds) Climate change 2013: the physical science basis. Contribution of working group I to the fifth assessment report of the Intergovernmental Panel on Climate Change. Cambridge, United Kingdom and New York, USA, Cambridge University Press.
• ISTA (2013) International rules for seed testing. Bassersdorf, Switzerland, International Seed Testing Association.
• Kotera A, Nawata E, Thao LV, Vuong NV and Sakuratani T. (2005) Effect of submergence on rice yield in the red river delta, Vietnam. Japanese Journal of Tropical Agriculture 49, 197-206.
• Kotera A and Nawata E. (2007) Role of plant height in the submergence tolerance of rice: a simulation analysis using an empirical model. Agricultural Water Management 89, 49-58.
• Mackill DJ, Ismail AM, Pamplona AM, Sanchez DL, Carandang JJ and Septiningsih E. (2010) Stress tolerant rice varieties for adaptation to a changing climate. Crop, Environment and Bioinformatics 7, 250-259.
• Mahbub AA, Rahman MS, Khanam M and Gomosta AR. (2005) Development of preharvest sprouting tolerance screening technique in rice. International Rice Research Notes 30, 50-51.
• Martínez-Eixarch M and Ellis RH. (2015) Temporal sensitivity of rice seed development from spikelet fertility to viable mature seed to extreme-temperature. Crop Science 55, 354-364.
• Mickelbart MV, Hasegawa PM and Bailey-Serres J. (2015) Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability. Nature Reviews Genetics 16, 237-251.
• Miura K, Lin SY, Yano M and Nagamine T. (2002) Mapping quantitative trait loci controlling seed longevity in rice (Oryza sativa L.). Theoretical and Applied Genetics 104, 981-986.
• Pili EC. (1968) Dormancy of rice seeds - its causes and methods of breaking. Philippine Journal of Plant Industry 33, 127-133.
• Powell AA, Yule LJ, Jing HC, Groot SPC, Bino RJ and Pritchard HW. (2000) The influence of aerated hydration seed treatment on seed longevity as assessed by the viability equations. Journal of Experimental Botany 51, 2031-2043.
• Rao NK and Jackson MT. (1996) Seed production environment and storage longevity of japonica rices (Oryza sativa L). Seed Science Research 6, 17-21.
• Ram PC, Singh AK, Singh BB, Singh VK, Singh HP, Setter TL, Singh VP and Singh RK. (1999) Environmental characterization of floodwater in eastern India: relevance to submergence tolerance of lowland rice. Experimental Agriculture 35, 141-152.
• Reddy BB, Ghosh BC and Panda MM. (1985) Flood tolerance of rice at different crop growth stages as affected by fertilizer application. Plant and Soil 83, 255-263.
• Roberts EH. (1963) An investigation of inter-varietal differences in dormancy and viability of rice seed. Annals of Botany 27, 365-369.
• Sarkar RK and Bhattacharjee B. (2011) Rice genotypes with Sub1 QTL differ in submergence tolerance, elongation ability during submergence and re-generation growth at re-emergence. Rice 5, 1-11.
• Sasaki K, Fukuta Y and Sato T. (2005) Mapping of quantitative trait loci controlling seed longevity of rice (Oryza sativa L.) after various periods of seed storage. Plant Breeding 124, 361-366.
• Septiningsih EM, Ignacio J, Sendon PD, Sanchez D, Ismail A and Mackill D. (2013) QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red. Theoretical and Applied Genetics 126, 1357-1366.
• Septiningsih EM, Pamplona AM, Sanchez DL, Neeraja CN, Vergara GV, Heuer S, Ismail A.M and Mackill DJ. (2009) Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond. Annals of Botany 103, 151-160.
• Sharma AR and Ghosh A. (1999) Submergence tolerance and yield performance of lowland rice as affected by agronomic management practices in eastern India. Field Crops Research 63, 187-189.
• Singh N, Dang TTM, Vergara GV, Pandey DM, Sanchez D, Neeraja CN, Septiningsih EM, Mendioro M, Tecson-Mendoza EM, Ismail AM, Mackill DJ and Heuer S. (2010) Molecular marker survey and expression analyses of the rice submergence-tolerance genes SUB1A and SUB1C. Theoretical and Applied Genetics 121, 1441–1453.
• Singh S, Mackill DJ and Ismail AM. (2009) Response of Sub1 rice introgression lines to submergence in the field: yield and grain quality. Field Crops Research 113, 12-23.
• Singh S, Mackill DJ and Ismail AM. (2011) Tolerance of longer-term partial stagnant flooding is independent of the Sub1 locus in rice. Field Crops Research 121, 311-323.
• Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T and Yano M. (2010) Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice. Proceedings of the National Academy of Sciences of the USA 107, 5792-5797.
• Summerfield RJ, Collinson ST, Ellis RH, Roberts EH and Penning de Vries FWT. (1992) Photothermal responses of flowering in rice (Oryza sativa L.). Annals of Botany 69, 101-112.
• Taiz L and Zeiger E. (2006) Plant physiology, 4th Edition. Massachusetts, Sinauer Associates.
• Tung LD and Serrano EP. (2011) Effect of warm water in breaking dormancy of rice seed. Omonrice 18, 129-136.
• Wassmann R, Jagadish SVK, Heuer S, Ismail A, Redona E, Serraj R, Singh RK, Howell G, Pathak H and Sumfleth K. (2009) Climate change affecting rice production: the physiological and agronomic basis for possible adaptation strategies, pp. 59-122 in L. S. Donald, L.S. (Ed.) Advances in agronomy. New York, Academic Press.
• Whitehouse KJ, Hay FR and Ellis RH. (2015) Increases in the longevity of desiccation-phase developing rice seeds: response to high-temperature drying depends on harvest moisture content. Annals of Botany 116, 245-259.
• Whitehouse KJ, Hay FR and Ellis RH. (2017) High-temperature stress during drying improves subsequent rice (Oryza sativa L.) seed longevity. Seed Science Research 27, 281-291.
• Woodstock LW and Grabe DF. (1967) Relationships between seed respiration during imbibition and subsequent seedling growth in Zea mays L. Plant Physiology 42, 1071-1076.
• Xu K, Xu X, Fukao T, Canlas P, Maghirang-Rodriguez R, Heuer S, Ismail AM, Bailey-Serres J, Ronald PC and Mackill DJ. (2006) Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice. Nature 442, 705-708.
• Yadav G and Ellis RH. (2016) Development of ability to germinate and of longevity in air-dry storage in wheat seed crops subjected to rain shelter or simulated supplementary rainfall. Seed Science Research 26, 332-341.
• Yoshida S. (1981) Fundamentals of rice crop science. Los Baños, Philippines, IRRI.
• Yoshida S, Forno D, Cock JH and Gomez KA (1976) Laboratory manual for physiological studies of rice, 3rd Edition. Los Baños, Philippines, IRRI.