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A lightweight supercomputing web portal for inferring phylogenetic trees

Johnson, D., Meade, A. and Alexandrov, V. N. (2009) A lightweight supercomputing web portal for inferring phylogenetic trees. In: 5th IEEE International Conference on e-Science Workshops , 2009, Oxford, UK.

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Official URL: http://dx.doi.org/10.1109/ESCIW.2009.5407990

Abstract/Summary

In this paper we describe a lightweight Web portal developed for running computational jobs on a IBM JS21 Bladecenter cluster, ThamesBlue, for inferring and analyzing evolutionary histories. We first discuss the need for leveraging HPC as a enabler for molecular phylogenetics research. We go on to describe how the portal is designed to interface with existing open-source software that is typical of a HPC resource configuration, and how by design this portal is generic enough to be portable to other similarly configured compute clusters, and for other applications.

Item Type:Conference or Workshop Item (Paper)
Refereed:Yes
Divisions:Faculty of Life Sciences > School of Biological Sciences
Faculty of Science > School of Systems Engineering
ID Code:9628
Uncontrolled Keywords:biology computing, genetics, mainframes, pattern clustering, portals, public domain software , HPC resource configuration, IBM JS21 Bladecenter cluster, ThamesBlue, lightweight supercomputing Web portal, molecular phylogenetics research, open-source software, phylogenetic trees
Publisher:IEEE

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