Number of items: 8.
Edmunds, N. S., Alharbi, S. M.A., Genc, A. G., Adiyaman, R. and McGuffin, L. J.
ORCID: https://orcid.org/0000-0003-4501-4767
(2023)
Estimation of model accuracy in CASP15 using the ModFOLDdock server.
Proteins: Structure, Function, and Bioinformatics, 91 (12).
pp. 1871-1878.
ISSN 1097-0134
doi: https://doi.org/10.1002/prot.26532
McGuffin, L. J.
ORCID: https://orcid.org/0000-0003-4501-4767, Edmunds, N. S., Genc, A. G., Alharbi, S. M. A., Salehe, B. R. and Adiyaman, R.
(2023)
Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers.
Nucleic Acids Research, 51 (W1).
W274-W280.
ISSN 1362-4962
doi: https://doi.org/10.1093/nar/gkad297
Adiyaman, R. and McGuffin, L. J.
ORCID: https://orcid.org/0000-0003-4501-4767
(2023)
Using local protein model quality estimates to guide a molecular dynamics-based refinement strategy.
In: Filipek, S. (ed.)
Homology Modeling: Methods and Protocols.
Methods in Molecular Biology.
Springer Nature, New York, pp. 119-140.
ISBN 9781071629734
doi: https://doi.org/10.1007/978-1-0716-2974-1_7
Adiyaman, R., Edmunds, N. S., Genc, A. G., Alharbi, S. M. A. and McGuffin, L.
ORCID: https://orcid.org/0000-0003-4501-4767
(2023)
Improvement of protein tertiary and quaternary structure predictions using the ReFOLD refinement method and the AlphaFold2 recycling process.
Bioinformatics Advances, 3 (1).
vbad078.
ISSN 2635-0041
doi: https://doi.org/10.1093/bioadv/vbad078
McGuffin, L. J.
ORCID: https://orcid.org/0000-0003-4501-4767, Aldowsari, F. M. F., Alharbi, S. M. A. and Adiyaman, R.
(2022)
ModFOLD8: accurate global and local quality estimates for 3D
protein models.
Nucleic Acids Research, 49 (W1).
W425-W430.
ISSN 1362-4962
doi: https://doi.org/10.1093/nar/gkab321
Kryshtafovych, A.
ORCID: https://orcid.org/0000-0001-5066-7178, Moult, J.
ORCID: https://orcid.org/0000-0002-3012-2282, Billings, W. M., Della Corte, D.
ORCID: https://orcid.org/0000-0002-8884-9724, Fidelis, K.
ORCID: https://orcid.org/0000-0002-8061-412X, Kwon, S., Olechnovič, K.
ORCID: https://orcid.org/0000-0003-4918-9505, Seok, C.
ORCID: https://orcid.org/0000-0002-1419-9888, Venclovas, Č., Won, J., Adiyaman, R. and McGuffin, L.
ORCID: https://orcid.org/0000-0003-4501-4767
(2021)
Modeling SARS‐CoV2 proteins in the CASP ‐commons experiment.
Proteins: Structure, Function, and Bioinformatics, 89 (12).
pp. 1987-1996.
ISSN 0887-3585
doi: https://doi.org/10.1002/prot.26231
Adiyaman, R. and McGuffin, L.
ORCID: https://orcid.org/0000-0003-4501-4767
(2021)
ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts.
Nucleic Acids Research, 49 (W1).
W589-W596.
ISSN 1362-4962
doi: https://doi.org/10.1093/nar/gkab300
Adiyaman, R.
(2021)
Improvement of MD-based protocols for the refinement
of 3D protein models.
PhD thesis, University of Reading.
doi: https://doi.org/10.48683/1926.00104643
This list was generated on Fri Aug 16 20:58:19 2024 UTC.