McGuffin, Liam J. ORCID: https://orcid.org/0000-0003-4501-4767, Edmunds, Nicholas S., Genc, Ahmet G., Alharbi, Shuaa M. A., Salehe, Bajuna R. and Adiyaman, Recep (2023) Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers. Nucleic Acids Research, 51 (W1). W274-W280. ISSN 1362-4962 doi: https://doi.org/10.1093/nar/gkad297

Edmunds, Nicholas S., Alharbi, Shuaa M.A., Genc, Ahmet G., Adiyaman, Recep and McGuffin, Liam J. ORCID: https://orcid.org/0000-0003-4501-4767 (2023) Estimation of model accuracy in CASP15 using the ModFOLDdock server. Proteins: Structure, Function, and Bioinformatics. ISSN 1097-0134 doi: https://doi.org/10.1002/prot.26532

Adiyaman, Recep and McGuffin, Liam J. ORCID: https://orcid.org/0000-0003-4501-4767 (2023) Using local protein model quality estimates to guide a molecular dynamics-based refinement strategy. In: Filipek, Sławomir (ed.) Homology Modeling: Methods and Protocols. Methods in Molecular Biology. Springer Nature, New York, pp. 119-140. ISBN 9781071629734 doi: https://doi.org/10.1007/978-1-0716-2974-1_7

Adiyaman, Recep, Edmunds, Nicholas S., Genc, Ahmet G., Alharbi, Shuaa M. A. and McGuffin, Liam ORCID: https://orcid.org/0000-0003-4501-4767 (2023) Improvement of protein tertiary and quaternary structure predictions using the ReFOLD refinement method and the AlphaFold2 recycling process. Bioinformatics Advances, 3 (1). vbad078. ISSN 2635-0041 doi: https://doi.org/10.1093/bioadv/vbad078

McGuffin, Liam J. ORCID: https://orcid.org/0000-0003-4501-4767, Aldowsari, Fahd M. F., Alharbi, Shuaa M. A. and Adiyaman, Recep (2022) ModFOLD8: accurate global and local quality estimates for 3D protein models. Nucleic Acids Research, 49 (W1). W425-W430. ISSN 1362-4962 doi: https://doi.org/10.1093/nar/gkab321

Kryshtafovych, Andriy ORCID: https://orcid.org/0000-0001-5066-7178, Moult, John ORCID: https://orcid.org/0000-0002-3012-2282, Billings, Wendy M., Della Corte, Dennis ORCID: https://orcid.org/0000-0002-8884-9724, Fidelis, Krzysztof ORCID: https://orcid.org/0000-0002-8061-412X, Kwon, Sohee, Olechnovič, Kliment ORCID: https://orcid.org/0000-0003-4918-9505, Seok, Chaok ORCID: https://orcid.org/0000-0002-1419-9888, Venclovas, Česlovas, Won, Jonghun, Adiyaman, Recep and McGuffin, Liam ORCID: https://orcid.org/0000-0003-4501-4767 (2021) Modeling SARS‐CoV2 proteins in the CASP ‐commons experiment. Proteins: Structure, Function, and Bioinformatics, 89 (12). pp. 1987-1996. ISSN 0887-3585 doi: https://doi.org/10.1002/prot.26231

Adiyaman, Recep and McGuffin, Liam ORCID: https://orcid.org/0000-0003-4501-4767 (2021) ReFOLD3: refinement of 3D protein models with gradual restraints based on predicted local quality and residue contacts. Nucleic Acids Research, 49 (W1). W589-W596. ISSN 1362-4962 doi: https://doi.org/10.1093/nar/gkab300

Adiyaman, Recep (2021) Improvement of MD-based protocols for the refinement of 3D protein models. PhD thesis, University of Reading. doi: https://doi.org/10.48683/1926.00104643