Article

Pagel, M. ORCID: https://orcid.org/0000-0001-7287-8865, Beaumont, M. A., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711, Verkerk, A. and Calude, A. (2019) Dominant words rise to the top by positive frequency-dependent selection. Proceedings of the National Academy of Sciences of the United States of America, 116 (15). pp. 7397-7402. ISSN 1091-6490 doi: https://doi.org/10.1073/pnas.1816994116

Chiurugwi, T., Beaumont, M. A., Wilkinson, M. J. and Battey, N. H. (2011) Adaptive divergence and speciation among sexual and pseudoviviparous populations of Festuca. Heredity, 106. pp. 854-861. ISSN 1365-2540 doi: https://doi.org/10.1038/hdy.2010.128

Beaumont, M. A., Cornuet, J. M., Marin, J. M. and Robert, C. P. (2009) Adaptive approximate Bayesian computation. Biometrika, 96 (4). pp. 983-990. ISSN 0006-3444 doi: https://doi.org/10.1093/biomet/asp052

Itan, Y., Powell, A., Beaumont, M. A., Burger, J. and Thomas, M. G. (2009) The Origins of Lactase Persistence in Europe. PLoS Computational Biology, 5 (8). p. 13. ISSN 1553-734X doi: https://doi.org/10.1371/journal.pcbi.1000491

Lopes, J. S., Balding, D. and Beaumont, M. A. (2009) PopABC: a program to infer historical demographic parameters. Bioinformatics, 25 (20). pp. 2747-2749. ISSN 1367-4803 doi: https://doi.org/10.1093/bioinformatics/btp487

Palero, F., Lopes, J., Abello, P., Macpherson, E., Pascual, M. and Beaumont, M. A. (2009) Rapid radiation in spiny lobsters (Palinurus spp) as revealed by classic and ABC methods using mtDNA and microsatellite data. Bmc Evolutionary Biology, 9. p. 13. ISSN 1471-2148 doi: https://doi.org/10.1186/1471-2148-9-263

Nielsen, R. and Beaumont, M. A. (2009) Statistical inferences in phylogeography. Molecular Ecology, 18 (6). pp. 1034-1047. ISSN 0962-1083 doi: https://doi.org/10.1111/j.1365-294X.2008.04059.x

Ross, A. B., Pineau, N., Kochhar, S., Bourgeois, A., Beaumont, M. and Decarli, B. (2009) Validation of a FFQ for estimating whole-grain cereal food intake. British Journal of Nutrition, 102 (11). pp. 1547-1551. ISSN 0007-1145 doi: https://doi.org/10.1017/s0007114509990845

Giovannini, A., Zanghirati, G., Beaumont, M. A., Chikhi, L. and Barbujani, G. (2009) A novel parallel approach to the likelihood-based estimation of admixture in population genetics. Bioinformatics, 25 (11). pp. 1440-1441. ISSN 1367-4803 doi: https://doi.org/10.1093/bioinformatics/btp136

Cornuet, J. M., Santos, F., Beaumont, M. A., Robert, C. P., Marin, J. M., Balding, D. J., Guillemaud, T. and Estoup, A. (2008) Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation. Bioinformatics, 24 (23). pp. 2713-2719. ISSN 1367-4803 doi: https://doi.org/10.1093/bioinformatics/btn514

Tallmon, D. A., Koyuk, A., Luikart, G. and Beaumont, M. A. (2008) ONeSAMP: a program to estimate effective population size using approximate Bayesian computation. Molecular Ecology Resources, 8 (2). pp. 299-301. ISSN 1471-8278 doi: https://doi.org/10.1111/j.1471-8286.2007.01997.x

Beaumont, M. A. and Panchal, M. (2008) On the validity of nested clade phylogeographical analysis. Molecular Ecology, 17 (11). pp. 2563-2565. ISSN 0962-1083 doi: https://doi.org/10.1111/j.1365-294X.2008.03786.x

Beaumont, M. A. (2008) Selection and sticklebacks. Molecular Ecology, 17 (15). pp. 3425-3427. ISSN 0962-1083 doi: https://doi.org/10.1111/j.1365-294X.2008.03863.x

Foll, M., Beaumont, M. A. and Gaggiotti, O. (2008) An approximate Bayesian computation approach to overcome biases that arise when using amplified fragment length polymorphism markers to study population structure. Genetics, 179 (2). pp. 927-939. ISSN 0016-6731 doi: https://doi.org/10.1534/genetics.107.084541

Brotherton, P., Endicott, P., Sanchez, J. J., Beaumont, M., Barnett, R., Austin, J. and Cooper, A. (2007) Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions. Nucleic Acids Research, 35 (17). pp. 5717-5728. ISSN 0305-1048 doi: https://doi.org/10.1093/nar/gkm588

Ciborowski, K. L., Consuegra, S., de Leaniz, C. G., Beaumont, M. A., Wang, J. L. and Jordan, W. C. (2007) Rare and fleeting: an example of interspecific recombination in animal mitochondrial DNA. Biology Letters, 3 (5). pp. 554-557. ISSN 1744-9561 doi: https://doi.org/10.1098/rsbl.2007.0290

Fagundes, N. J. R., Ray, N., Beaumont, M., Neuenschwander, S., Salzano, F. M., Bonatto, S. L. and Excoffier, L. (2007) Statistical evaluation of alternative models of human evolution. Proceedings of the National Academy of Sciences of the United States of America, 104 (45). pp. 17614-17619. ISSN 0027-8424 doi: https://doi.org/10.1073/pnas.0708280104

Ciborowski, K. L., Consuegra, S., de Leaniz, C. G., Wang, J., Beaumont, M. A. and Jordan, W. C. (2007) Stocking may increase mitochondrial DNA diversity but fails to halt the decline of endangered Atlantic salmon populations. Conservation Genetics, 8 (6). pp. 1355-1367. ISSN 1566-0621 doi: https://doi.org/10.1007/s10592-007-9286-2

Panchal, M. and Beaumont, M. A. (2007) The automation and evaluation of nested clade phylogeographic analysis. Evolution, 61 (6). pp. 1466-1480. ISSN 0014-3820 doi: https://doi.org/10.1111/j.1558-5646.2007.00124.x

Cornuet, J. M. and Beaumont, M. A. (2007) A note on the accuracy of PAC-likelihood inference with microsatellite data. Theoretical Population Biology, 71 (1). pp. 12-19. ISSN 0040-5809 doi: https://doi.org/10.1016/j.tpb.2006.06.004

Kitchener, A. C., Beaumont, M. A. and Richardson, D. (2006) Geographical variation in the clouded leopard, Neofelis nebulosa, reveals two species. Current Biology, 16 (23). pp. 2377-2383. ISSN 0960-9822 doi: https://doi.org/10.1016/j.cub.2006.10.066

Cornuet, J. M., Beaumont, M. A., Estoup, A. and Solignac, M. (2006) Inference on microsatellite mutation processes in the invasive mite, Varroa destructor, using reversible jump Markov chain Monte Carlo. Theoretical Population Biology, 69 (2). pp. 129-144. ISSN 0040-5809 doi: https://doi.org/10.1016/j.tpb.2005.07.005

Beaumont, M. A. (2005) Adaptation and speciation: what can F-st tell us? Trends in Ecology & Evolution, 20 (8). pp. 435-440. ISSN 0169-5347 doi: https://doi.org/10.1016/j.tree.2005.05.017

Hamilton, G., Currat, M., Ray, N., Heckel, G., Beaumont, M. and Excoffier, L. (2005) Bayesian estimation of recent migration rates after a spatial expansion. Genetics, 170 (1). pp. 409-417. ISSN 0016-6731 doi: https://doi.org/10.1534/genetics.104.034199

Beaumont, M. A. and Rannala, B. (2004) The Bayesian revolution in genetics. Nature Reviews Genetics, 5 (4). pp. 251-261. ISSN 1471-0056 doi: https://doi.org/10.1038/nrg1318

Tallmon, D. A., Luikart, G. and Beaumont, M. A. (2004) Comparative evaluation of a new effective population size estimator based on approximate Bayesian computation. Genetics, 167 (2). pp. 977-988. ISSN 0016-6731

Estoup, A., Beaumont, M., Sennedot, F., Moritz, C. and Cornuet, J. M. (2004) Genetic analysis of complex demographic scenarios: Spatially expanding populations of the cane toad, Bufo marinus. Evolution: International Journal of Organic Evolution, 58 (9). pp. 2021-2036. ISSN 0014-3820 doi: https://doi.org/10.1111/j.0014-3820.2004.tb00487.x

Beaumont, M. A. and Balding, D. J. (2004) Identifying adaptive genetic divergence among populations from genome scans. Molecular Ecology, 13 (4). pp. 969-980. ISSN 0962-1083 doi: https://doi.org/10.1111/j.1365-294X.2004.02125.x

Beaumont, M. A. (2004) Recent developments in genetic data analysis: what can they tell us about human demographic history? Heredity, 92 (5). pp. 365-379. ISSN 0018-067X doi: https://doi.org/10.1038/sj.hdy.6800447

Beaumont, M. A. (2003) Discussion comments on "Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities". Royal Statistical Society, Series A, 166 (2). pp. 188-202. ISSN 0964-1998

Beaumont, M. A. (2003) Estimation of population growth or decline in genetically monitored populations. Genetics, 164 (3). pp. 1139-60. ISSN 0016-6731

Vogl, C., Das, A., Beaumont, M., Mohanty, S. and Stephan, W. (2003) Population subdivision and molecular sequence variation: Theory and analysis of Drosophila ananassae data. Genetics, 165 (3). pp. 1385-1395. ISSN 0016-6731

Book or Report Section

Beaumont, M.A. (2009) Theoretical outlook. In: Bertorelle, G., Bruford, M.W., Hauffe, H.C., Annapaola, R. and Vernesi, C. (eds.) Population genetics for animal conservation. Cambridge University Press, Cambridge, pp. 345-373. ISBN 9780521685375

Beaumont, M. A. (2008) Joint determination of topology, divergence time, and immigration in population trees. In: Matsumura, S., Forster, P. and Renfrew, C. (eds.) Simulation, Genetics, and Human Prehistory. McDonald Institute for Archaeological Research, Cambridge, pp. 135-154. ISBN 9781902937458

Beaumont, M.A. (2007) Conservation genetics. In: Balding, D.J., Bishop, M. and Cannings, C. (eds.) The Handbook of Statistical Genetics. 3rd edition. Wiley Blackwell, New York, pp. 779-808. ISBN 9780470058305

Chikhi, L. and Beaumont, M.A. (2005) Modelling human genetic history. In: The Encyclopedia of Genetics, Genomics, Proteomics & Bioinformatics. John Wiley, New York. ISBN 9780470849743

Beaumont, M. A. (2003) Conservation Genetics. In: Balding, D.J., Bishop, M. and Cannings, C. (eds.) The Handbook of Statistical Genetics 2nd Edition. John Wiley, New York. ISBN 0470848294