Article

Ferreira, Clarissa P., Bastolla, Camila L. V., Saldaña-Serrano, Miguel, Lima, Daína, de M. Gomes, Carlos H. A., Schroeder, Declan C., Bainy, Afonso C. D. and Lüchmann, Karim H. (2023) Effects of cadmium and zinc on gene expression of novel molecular biomarkers in the mangrove oyster Crassostrea gasar. Comparative Biochemistry and Physiology - Part C: Toxicology and Pharmacology, 270. 109641. ISSN 1878-1659 doi: https://doi.org/10.1016/j.cbpc.2023.109641

Krishna, Venkatramana D., Roehrich, Heidi, Schroeder, Declan C., Cheeran, Maxim C.-J. ORCID: https://orcid.org/0000-0002-5331-4746, Yuan, Ching and Hou, Joshua H. (2022) In vitro infection of human ocular tissues by SARS-CoV-2 lineage A isolates. BMC Ophthalmology, 22. 518. ISSN 1471-2415 doi: https://doi.org/10.1186/s12886-022-02728-w

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Palowski, Amanda, Balestreri, Cecilia, Urriola, Pedro E., van de Ligt, Jennifer L. G., Sampedro, Fernando, Dee, Scott, Shah, Apoorva, Yancy, Haile F., Shurson, Gerald C. and Schroeder, Declan C. (2022) Survival of a surrogate African swine fever virus-like algal virus in feed matrices using a 23-day commercial United States truck transport model. Frontiers in Microbiology, 13. 1059118. ISSN 1664-302X doi: https://doi.org/10.3389/fmicb.2022.1059118

Ferreira, Clarissa P., Moreira, Renato S., Toledo-Silva, Guilherme, Schroeder, Declan C., Bainy, Afonso C. D. and Lüchmann, Karim H (2022) Analysis of Crassostrea gasar transcriptome reveals candidate genes involved in metal metabolism. Chemosphere, 307 (Pt 4). 136009. ISSN 0045-6535 doi: https://doi.org/10.1016/j.chemosphere.2022.136009

Makau, Dennis N. ORCID: https://orcid.org/0000-0002-1802-2545, Lycett, Samantha ORCID: https://orcid.org/0000-0003-3159-596X, Michalska-Smith, Matthew, Paploski, Igor A. D., Cheeran, Maxim C.-J., Craft, Meggan E. ORCID: https://orcid.org/0000-0001-5333-8513, Kao, Rowland R. ORCID: https://orcid.org/0000-0003-0919-6401, Schroeder, Declan C. ORCID: https://orcid.org/0000-0001-5991-2838, Doeschl-Wilson, Andrea and VanderWaal, Kimberly ORCID: https://orcid.org/0000-0002-5764-6430 (2022) Ecological and evolutionary dynamics of multi-strain RNA viruses. Nature Ecology & Evolution, 6 (10). pp. 1414-1422. ISSN 2397-334X doi: https://doi.org/10.1038/s41559-022-01860-6

Schroeder, Declan C. ORCID: https://orcid.org/0000-0001-5991-2838, Stone, Jaclyn L., Weeks, Amy, Jacobs, Makeba, DaSilva, Jeol, Butts, Shimar, Richards, Lorenzo, Layne, Shevon, Miller, Erwin, Walrond, Dwight, Hartley, Dane and Lyken, Dexter (2022) Two distinct genomic lineages of sinaivirus detected in Guyanese Africanized honey bees. Microbiology Resource Announcements, 11 (8). e00512-22. ISSN 2576-098X doi: https://doi.org/10.1128/mra.00512-22

Cheng, Ting-Yu, Campler, Magnus R., Schroeder, Declan C., Yang, My, Mor, Sunil K., Ferreira, Juliana B. and Arruda, Andréia G. (2022) Detection of multiple lineages of PRRSV in breeding and growing swine farms. Frontiers in Veterinary Science, 9. 884733. ISSN 2297-1769 doi: https://doi.org/10.3389/fvets.2022.884733

Pavliscak, Laura A., Nirmala, Jayaveeramuthu, Singh, Vikash K. ORCID: https://orcid.org/0000-0003-4255-7352, Sporer, Kelly R. B., Taxis, Tasia M. ORCID: https://orcid.org/0000-0002-4310-9570, Kumar, Pawan, Goyal, Sagar M. ORCID: https://orcid.org/0000-0002-7781-3080, Mor, Sunil Kumar ORCID: https://orcid.org/0000-0002-1112-088X, Schroeder, Declan C. ORCID: https://orcid.org/0000-0001-5991-2838, Wells, Scott J. and Droscha, Casey J. (2021) Tracing viral transmission and evolution of Bovine leukemia virus through long read Oxford nanopore sequencing of the proviral genome. Pathogens, 10 (9). 1191. ISSN 2076-0817 doi: https://doi.org/10.3390/pathogens10091191

Highfield, Andrea, Ward, Angela, Pipe, Richard and Schroeder, Declan C. (2021) Molecular and phylogenetic analysis reveals new diversity of Dunaliella salina from hypersaline environments. Journal of the Marine Biological Association of the United Kingdom, 101 (1). pp. 27-37. ISSN 0025-3154 doi: https://doi.org/10.1017/S0025315420001319

Bellas, Christopher M. ORCID: https://orcid.org/0000-0001-5084-7830, Schroeder, Declan C. ORCID: https://orcid.org/0000-0001-5991-2838, Edwards, Arwyn, Barker, Gary and Anesio, Alexandre M. ORCID: https://orcid.org/0000-0003-2990-4014 (2020) Flexible genes establish widespread bacteriophage pan-genomes in cryoconite hole ecosystems. Nature communications, 11 (1). 4403. ISSN 2041-1723 doi: https://doi.org/10.1038/s41467-020-18236-8

Yañez, Orlando, Piot, Niels, Dalmon, Anne, de Miranda, Joachim R., Chantawannakul, Panuwan, Panziera, Delphine, Amiri, Esmaeil, Smagghe, Guy, Schroeder, Declan and Chejanovsky, Nor (2020) Bee viruses: routes of infection in Hymenoptera. Frontiers in Microbiology, 11. 943. ISSN 1664-302X doi: https://doi.org/10.3389/fmicb.2020.00943

Highfield, Andrea, Kevill, Jessica, Mordecai, Gideon, Hunt, Jade, Henderson, Summer, Sauvard, Daniel, Feltwell, John, Martin, Stephen J., Sumner, Seirian and Schroeder, Declan C. (2020) Detection and replication of Moku virus in honey bees and social wasps. Viruses, 12 (6). 607. ISSN 1999-4915 doi: https://doi.org/10.3390/v12060607

Traniello, Ian M., Bukhari, Syed Abbas, Kevill, Jessica, Ahmed, Amy Cash, Hamilton, Adam R., Naeger, Nicholas L., Schroeder, Declan C. and Robinson, Gene E. (2020) Meta-analysis of honey bee neurogenomic response links deformed wing virus type A to precocious behavioral maturation. Scientific Reports, 10. 3101. ISSN 2045-2322 doi: https://doi.org/10.1038/s41598-020-59808-4

Kevill, Jessica L. ORCID: https://orcid.org/0000-0001-7367-4338, Lee, Katie, Goblirsch, Michael ORCID: https://orcid.org/0000-0002-5448-8350, McDermott, Erin, Tarpy, David R. ORCID: https://orcid.org/0000-0001-8601-6094, Spivak, Marla ORCID: https://orcid.org/0000-0002-6822-3636 and Schroeder, Declan C. ORCID: https://orcid.org/0000-0001-5991-2838 (2020) The pathogen profile of a honey bee queen does not reflect that of her workers. Insects, 11 (6). 382. ISSN 2075-4450 doi: https://doi.org/10.3390/insects11060382

Paploski, Igor Adolfo Dexheimer, Corzo, Cesar, Rovira, Albert, Murtaugh, Michael P., Sanhueza, Juan Manuel, Vilalta, Carles, Schroeder, Declan C. and VanderWaal, Kimberly (2019) Temporal dynamics of co-circulating lineages of porcine reproductive and respiratory syndrome virus. Frontiers in Microbiology, 10. 2486. ISSN 1664-302X doi: https://doi.org/10.3389/fmicb.2019.02486

Kevill, Jessica L., Souza, Flaviane S. de, Sharples, Christopher, Oliver, Randy, Schroeder, Declan C. and Martin, Stephen J. (2019) DWV-A lethal to honey bees (Apis mellifera): a colony level survey of DWV variants (A, B, and C) in England, Wales, and 32 states across the US. Viruses, 11 (5). 426. ISSN 1999-4915 doi: https://doi.org/10.3390/v11050426

Brettell, Laura E., Schroeder, Declan C. and Martin, Stephen J. (2019) RNAseq analysis reveals virus diversity within Hawaiian apiary insect communities. Viruses, 11 (5). 397. ISSN 1999-4915 doi: https://doi.org/10.3390/v11050397

Bretherton, Laura, Poulton, Alex, Lawson, Tracy, Rukminasari, Nita, Balestreri, Cecilia, Schroeder, Declan, Moore, C. Mark and Suggett, David J. (2019) Day length as a key factor moderating the response of coccolithophore growth to elevated pCO2. Limnology and Oceanography, 64 (3). pp. 1284-1296. ISSN 0024-3590 doi: https://doi.org/10.1002/lno.11115

McKeown, Dean A., Schroeder, Joanna L., Stevens, Kim, Peters, Akira F., Sáez, Claudio A., Park, Jihae, Rothman, Mark D., Bolton, John J., Brown, Murray T. and Schroeder, Declan (2018) Phaeoviral infections are present in macrocystis, ecklonia and undaria (laminariales) and are influenced by wave exposure in ectocarpales. Viruses, 10 (8). 410. ISSN 1999-4915 doi: https://doi.org/10.3390/v10080410

Mertens, Kenneth Neil, Carbonell-Moore, M. Consuelo, Pospelova, Vera, Head, Martin J., Highfield, Andrea, Schroeder, Declan, Gu, Haifeng, Andree, Karl B., Fernandez, Margarita, Yamaguchi, Aika, Takano, Yoshihito, Matsuoka, Kazumi, Nézan, Elisabeth, Bilien, Gwenael, Okolodkov, Yuri, Koike, Kazuhiko, Hoppenrath, Mona, Pfaff, Maya, Pitcher, Grant, Al-Muftah, Abdulrahman, Rochon, André, Lim, Po Teen, Leaw, Chui Pin, Lim, Zhen Fei and Ellegaard, Marianne (2018) Pentaplacodinium saltonense gen. et sp. nov. (Dinophyceae) and its relationship to the cyst-defined genus Operculodinium and yessotoxin-producing Protoceratium reticulatum. Harmful algae, 71. pp. 57-77. ISSN 1878-1470 doi: https://doi.org/10.1016/j.hal.2017.12.003

Flaviani, Flavia, Schroeder, Declan C., Lebret, Karen, Balestreri, Cecilia, Highfield, Andrea C., Schroeder, Joanna L., Thorpe, Sally E., Moore, Karen, Pasckiewicz, Konrad, Pfaff, Maya C. and Rybicki, Edward P. (2018) Distinct oceanic microbiomes from viruses to protists located near the Antarctic Circumpolar Current. Frontiers in Microbiology, 9. 01474. ISSN 1664-302X doi: https://doi.org/10.3389/fmicb.2018.01474

Kevill, Jessica L., Highfield, Andrea, Mordecai, Gideon J., Martin, Stephen J. and Schroeder, Declan C. (2017) ABC assay: method development and application to quantify the role of three DWV master variants in overwinter colony losses of European honey bees. Viruses, 9 (11). 314. ISSN 1999-4915 doi: https://doi.org/10.3390/v9110314

Flaviani, Flavia, Schroeder, Declan C., Balestreri, Cecilia, Schroeder, Joanna L., Moore, Karen, Paszkiewicz, Konrad, Pfaff, Maya C. and Rybicki, Edward P. (2017) A pelagic microbiome (viruses to protists) from a small cup of seawater. Viruses, 9 (3). 47. ISSN 1999-4915 doi: https://doi.org/10.3390/v9030047

Di, Yanan, Aminot, Yann, Schroeder, Declan C., Readman, James W. and Jha, Awadhesh N. (2017) Integrated biological responses and tissue-specific expression of p53 and ras genes in marine mussels following exposure to benzo(α)pyrene and C60 fullerenes, either alone or in combination. Mutagenesis, 32 (1). pp. 77-90. ISSN 0267-8357 doi: https://doi.org/10.1093/mutage/gew049

Highfield, Andrea, Joint, Ian, Gilbert, Jack, Crawfurd, Katharine and Schroeder, Declan C. (2017) Change in Emiliania huxleyi virus assemblage diversity but not in host genetic composition during an ocean acidification mesocosm experiment. Viruses, 9 (3). 41. ISSN 1999-4915 doi: https://doi.org/10.3390/v9030041

Wagstaff, Ben, Vladu, Iulia, Barclay, J., Schroeder, Declan C., Malin, Gill and Field, Robert (2017) Isolation and characterization of a double stranded DNA mgavirus infecting the toxin-producing haptophyte Prymnesium parvum. Viruses, 9 (3). 40. ISSN 1999-4915 doi: https://doi.org/10.3390/v9030040

McKeown, Dean A., Stevens, Kim, Peters, Akira F., Bond, Peter, Harper, Glenn M., Brownlee, Colin, Brown, Murray T. and Schroeder, Declan C. (2017) Phaeoviruses discovered in kelp (Laminariales). ISME Journal, 11 (12). pp. 2869-2873. ISSN 1751-7370 doi: https://doi.org/10.1038/ismej.2017.130

Mordecai, Gideon J., Verret, Frederic, Highfield, Andrea and Schroeder, Declan C. (2017) Schrödinger’s Cheshire cat: are haploid Emiliania huxleyi cells resistant to viral infection or not? Viruses, 9 (3). 51. ISSN 1999-4915 doi: https://doi.org/10.3390/v9030051

Lebret, Karen, Schroeder, Joanna, Balestreri, Cecilia, Highfield, Andrea, Cummings, Denise, Smyth, Tim and Schroeder, Declan (2016) Choice of molecular barcode will affect species prevalence but not bacterial community composition. Marine Genomics, 29. pp. 39-43. ISSN 1876-7478 doi: https://doi.org/10.1016/j.margen.2016.09.001

Mordecai, Gideon J., Brettell, Laura E., Pachori, Purnima, Villalobos, Ethel M., Martin, Stephen J., Jones, Ian M. and Schroeder, Declan C. (2016) Moku virus; a new Iflavirus found in wasps, honey bees and Varroa. Scientific reports, 6. 34983. ISSN 2045-2322 doi: https://doi.org/10.1038/srep34983

Mordecai, Gideon J., Wilfert, Lena, Martin, Stephen J., Jones, Ian M. and Schroeder, Declan C. (2016) Diversity in a honey bee pathogen: first report of a third master variant of the Deformed Wing Virus quasispecies. The ISME Journal, 10 (5). pp. 1264-1273. ISSN 1751-7370 doi: https://doi.org/10.1038/ismej.2015.178

Mordecai, Gideon J., Brettell, Laura E., Martin, Stephen J., Dixon, David, Jones, Ian M. and Schroeder, Declan C. (2016) Superinfection exclusion and the long-term survival of honey bees in Varroa-infested colonies. ISME Journal, 10 (5). pp. 1182-1191. ISSN 1751-7370 doi: https://doi.org/10.1038/ismej.2015.186

Durak, Grażyna M., Taylor, Alison R., Walker, Charlotte E., Probert, Ian, de Vargas, Colomban, Audic, Stephane, Schroeder, Declan, Brownlee, Colin and Wheeler, Glen L. (2016) A role for diatom-like silicon transporters in calcifying coccolithophores. Nature Communications, 7. 10543. ISSN 2041-1723 doi: https://doi.org/10.1038/ncomms10543

Schroeder, Declan C. (2015) More to Phaeovirus infections than first meets the eye. Perspectives in Phycology, 2 (2). pp. 105-109. ISSN 2198-011X doi: https://doi.org/10.1127/pip/2015/0034

McQuatters-Gollop, Abigail, Edwards, Martin, Helaouët, Pierre, Johns, David G., Owens, Nicholas J. P., Raitsos, Dionysios E., Schroeder, Declan, Skinner, Jennifer and Stern, Rowena F. (2015) The Continuous Plankton Recorder survey: how can long-term phytoplankton datasets contribute to the assessment of Good Environmental Status? Estuarine, Coastal and Shelf Science, 162. pp. 88-97. ISSN 0272-7714 doi: https://doi.org/10.1016/j.ecss.2015.05.010

Lüchmann, Karim H., Clark, Melody S., Bainy, Afonso C.D., Gilbert, Jack A., Craft, John A., Chipman, J.Kevin, Thorne, Michael A.S., Mattos, Jacó J., Siebert, Marília N. and Schroeder, Declan C. (2015) Key metabolic pathways involved in xenobiotic biotransformation and stress responses revealed by transcriptomics of the mangrove oyster Crassostrea brasiliana. Aquatic Toxicology, 166. pp. 10-20. ISSN 0166-445X doi: https://doi.org/10.1016/j.aquatox.2015.06.012

Highfield, Andrea, Evans, Claire, Walne, Anthony, Miller, Peter I. and Schroeder, Declan C. (2014) How many Coccolithovirus genotypes does it take to terminate an Emiliania huxleyi bloom? Virology, 466-467. pp. 138-145. ISSN 0042-6822 doi: https://doi.org/10.1016/j.virol.2014.07.017

Lüchmann, Karim H., Dafre, Alcir L., Trevisan, Rafael, Craft, John A., Meng, Xiang, Mattos, Jacó J., Zacchi, Flávia L., Dorrington, Tarquin S., Schroeder, Declan C. and Bainy, Afonso C.D. (2014) A light in the darkness: new biotransformation genes, antioxidant parameters and tissue-specific responses in oysters exposed to phenanthrene. Aquatic Toxicology, 152. pp. 324-334. ISSN 0166-445X doi: https://doi.org/10.1016/j.aquatox.2014.04.021

Krueger-Hadfield, S. A., Balestreri, C., Schroeder, J., Highfield, A., Helaouët, P., Allum, J., Moate, R., Lohbeck, K. T., Miller, P. I., Riebesell, U., Reusch, T. B. H., Rickaby, R. E. M., Young, J., Hallegraeff, G., Brownlee, C. and Schroeder, Declan C. (2014) Genotyping an Emiliania huxleyi (prymnesiophyceae) bloom event in the North Sea reveals evidence of asexual reproduction. Biogeosciences, 11 (18). pp. 5215-5234. ISSN 1726-4170 doi: https://doi.org/10.5194/bg-11-5215-2014

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Book

Schroeder, Declan C., Van Etten, Jim L., Jones, Ian M. ORCID: https://orcid.org/0000-0002-7738-2516, Paweska, Janusz Tadeusz, Shi, Zhengli and Abdel-Moneim, Ahmed Sayed (2021) Host and pathogen mechanisms underpinning viral ecology and emerging infections. Frontiers in Microbiology. Frontiers, pp427. ISBN 9782889665068 doi: https://doi.org/10.3389/978-2-88966-506-8