A

AbuOun, M., Suthers, P. F., Jones, G. I., Carter, B. R., Saunders, M. P., Maranas, C. D., Woodward, M. J. and Anjum, M. F. (2009) Genome scale reconstruction of a Salmonella metabolic model comparison of similarity and differences with a commensal Escherichia coli strain. The Journal of Biological Chemistry, 284 (43). pp. 29480-29488. ISSN 1083-351X doi: 10.1074/jbc.M109.005868

Aktan, I., Woodward, M. and La Ragione, R. M. (2009) Interaction between attaching-effacing Escherichia coli O26:K60 and O157:H7 in young lambs. Research in Veterinary Science, 87 (1). pp. 13-15. ISSN 0034-5288 doi: 10.1016/j.rvsc.2008.11.006

B

Bailey, A. M., Constantinidou, C., Ivens, A., Garvey, M. I., Webber, M. A., Coldham, N., Hobman, J. L., Wain, J., Woodward, M. J. and Piddock, L. J. V. (2009) Exposure of Escherichia coli and Salmonella enterica serovar Typhimurium to triclosan induces a species-specific response, including drug detoxification. Journal of Antimicrobial Chemotherapy, 64 (5). pp. 973-985. ISSN 0305-7453 doi: 10.1093/jac/dkp320

Best, A., Clifford, D., Crudgington, B., Cooley, W. A., Nunez, A., Carter, B., Weyer, U., Woodward, M. J. and La Ragione, R. M. (2009) Intermittent Escherichia coli O157:H7 colonisation at the terminal rectum mucosa of conventionally-reared lambs. Veterinary Research, 40 (1). 40:09. ISSN 0928-4249 doi: 10.1051/vetres:2008047

Blair, J. M. A., La Ragione, R. M., Woodward, M. J. and Piddock, L. J. V. (2009) Periplasmic adaptor protein AcrA has a distinct role in the antibiotic resistance and virulence of Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 64 (5). pp. 965-972. ISSN 0305-7453 doi: 10.1093/jac/dkp311

C

Collins, J. W., La Ragione, R. M., Woodward, M. J. and Searle, L. E. J. (2009) Application of pre- and probiotics in livestock. In: Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Rastall, R. A. (eds.) Prebiotics and Probiotics Science and Technology. Springer-Verlag, New York, pp. 57-88. ISBN 9780387790572

Cox, R., Woodward, M. J. and Clough, H. E. (2009) The epidemiology of antimicrobial resistance in incidents of nontyphoidal Salmonella isolates from livestock in the UK: trends, seasonality and changes. In: International Symposia on Veterinary Epidemiology and Economics.

D

Duarte, I. F., Legido-Quigley, C., Parker, D. A., Swann, J., Spraul, M., Braumann, U., Gil, A. M., Holmes, E., Nicholson, J. K., Murphy, G. M., Vilca-Melendez, H., Heaton, N. and Lindon, J. C. (2009) Identification of metabolites in human hepatic bile using 800 MHz 1H NMR spectroscopy, HPLC-NMR/MS and UPLC-MS. Molecular Biosystems, 5. pp. 180-190. ISSN 1742-206X doi: 10.1039/B814426E

E

Eveillard, A., Lasserre, F., de Tayrac, M., Polizzi, A., Claus, S., Canlet, C., Mselli-Lakhal, L., Gotardi, G., Paris, A., Guillou, H., Martin, P. G. P. and Pineau, T. (2009) Identification of potential mechanisms of toxicity after di-(2-ethylhexyl)-phthalate (DEHP) adult exposure in the liver using a systems biology approach. Toxicology and applied pharmacology, 236 (3). pp. 282-292. ISSN 0041-008X doi: 10.1016/j.taap.2009.02.008

H

Hoyles, L. (2009) In vitro examination of the effect of Orlistat on the ability of the faecal microbiota to utilize dietary lipids. PhD thesis, University of Reading.

Hoyles, L. and McCartney, A. L. (2009) What do we mean when we refer to Bacteroidetes populations in the human gastrointestinal microbiota? FEMS Microbiology Letters, 299 (2). pp. 175-183. ISSN 0378-1097 doi: 10.1111/j.1574-6968.2009.01741.x

L

La Ragione, R. M., Best, A., Woodward, M. J. and Wales, A. D. (2009) Escherichia coli O157:H7 colonization in small domestic ruminants. FEMS Microbiology Reviews, 33 (2). pp. 394-410. ISSN 1574-6976 doi: 10.1111/j.1574-6976.2008.00138.x

M

Mahajan, A., Currie, C. G., Mackie, S., Tree, J., McAteer, S., McKendrick, I., McNeilly, T. N., Roe, A., La Ragione, R. M., Woodward, M. J., Gally, D. L. and Smith, D. G. E. (2009) An investigation of the expression and adhesin function of H7 flagella in the interaction of Escherichia coli O157: H7 with bovine intestinal epithelium. Cellular Microbiology, 11 (1). pp. 121-137. ISSN 1462-5814 doi: 10.1111/j.1462-5822.2008.01244.x

Mulder, I., Schmidt, B., Stokes, C., Lewis, M. C.,, Bailey, M., Aminov, R., Prosser, J., Gill, B., Pluske, J., Mayer, C.-D., Musk, C. and Kelly, D. (2009) Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces. BMC Biology, 7 (79). ISSN 1741-7007 doi: 10.1186/1741-7007-7-79

P

Pan, Z. S., Carter, B., Nunez-Garcia, J., AbuOun, M., Fookes, M., Ivens, A., Woodward, M. J. and Anjum, M. F. (2009) Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport. Microbiology-Sgm, 155. pp. 3200-3213. ISSN 1350-0872 doi: 10.1099/mic.0.029405-0

R

Roger, L.C. and McCartney, A.L. (2009) The application of prebiotics and synbiotics in pediatrics. In: Michail, S. and Sherman, P.M. (eds.) Probiotics in pediatric medicine. Nutrition and health series. Humana, Totowa, New Jersey, pp. 307-322. ISBN 9781603272889 doi: 10.1007/978-1-60327-289-6

S

Salazar, N., Ruas-Madiedo, P., Kolida, S., Collins, M., Rastall, R., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and de los Reyes-Gavilan, C.G. (2009) Exopolysaccharides produced by Bifidobacterium longum IPLA E44 and Bifidobacterium animalis subsp lactis IPLA R1 modify the composition and metabolic activity of human faecal microbiota in pH-controlled batch cultures. International Journal of Food Microbiology, 135 (3). pp. 260-267. ISSN 0168-1605 doi: 10.1016/j.ijfoodmicro.2009.08.017

Searle, L. E. J., Best, A., Nunez, A., Salguero, F. J., Johnson, L., Weyer, U., Dugdale, A. H., Cooley, W. A., Carter, B., Jones, G., Tzortzis, G., Woodward, M. J. and La Ragione, R. M. (2009) A mixture containing galactoollgosaccharide, produced by the enzymic activity of Bifidobacterium bifidum, reduces Salmonella enterica serovar Typhimurium infection in mice. Journal of Medical Microbiology, 58 (1). pp. 37-48. ISSN 0022-2615 doi: 10.1099/jmm.0.004390-0

Simons, R., Brouwer, A., Hill, A. and Woodward, M. J. (2009) Assessing the effectiveness of GB cattle surveillance in detecting new epidemic strains of Salmonella. In: International Symposia on Veterinary Epidemiology and Economics.

Swann, J., Wang, Y., Abecia, L., Costabile, A., Tuohy, K., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, Roberts, D., Sidaway, J., Jones, H., Wilson, I. D., Nicholson, J. and Holmes, E. (2009) Gut microbiome modulates the toxicity of hydrazine: a metabonomic study. Molecular Biosystems, 5. pp. 351-355. ISSN 1742-206X

V

Verner-Jeffreys, D. W., Welch, T. J., Schwarz, T., Pond, M. J., Woodward, M. J., Haig, S. J., Rimmer, G. S. E., Roberts, E., Morrison, V. and Baker-Austin, C. (2009) High prevalence of multidrug-tolerant bacteria and associated antimicrobial resistance genes isolated from ornamental fish and their carriage water. PLoS ONE, 4 (12). e8388. ISSN 1932-6203 doi: 10.1371/journal.pone.0008388

W

Waldram, A., Holmes, E., Wang, Y.L., Rantalainen, M., Wilson, I.D., Tuohy, K.M., McCartney, A.L., Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 and Nicholson, J.K. (2009) Top-down systems biology modeling of host metabotype-microbiome associations in obese rodents. Journal of Proteome Research, 8 (5). pp. 2361-2375. ISSN 1535-3893 doi: 10.1021/pr8009885

Wragg, P., La Ragione, R. M., Best, A., Relchel, R., Anjum, M. F., Mafura, A. and Woodward, M. J. (2009) Characterisation of Escherichia fergusonii isolates from farm animals using an Escherichia coli virulence gene array and tissue culture adherence assays. Research in Veterinary Science, 86 (1). pp. 27-35. ISSN 0034-5288 doi: 10.1016/j.rvsc.2008.05.014