Article

Noble, A., Durant, L., Hoyles, L., McCartney, A. L., Man, R., Segal, J., Costello, S. P., Hendy, P., Reddi, D., Bouri, S., Lim, D. N. F., Pring, T., O’Connor, M. J., Datt, P., Wilson, A., Arebi, N., Akbar, A., Hart, A. L., Carding, S. R. and Knight, S. C. (2020) Deficient resident memory T-cell and Cd8 T-cell response to commensals in inflammatory bowel disease. Journal of Crohn's and Colitis, 14 (4). pp. 525-537. ISSN 1876-4479 doi: https://doi.org/10.1093/ecco-jcc/jjz175

Muchiri, M.N., McCartney, A. and Methven, L. (2020) Sensory profile and consumer preference of novel probiotic yoghurt enriched with orange sweet potato (Ipomoea batatas). African Journal of Food, Agriculture, Nutrition and Development, 20 (5). pp. 16471-16489. ISSN 1684-5358 doi: https://doi.org/10.18697/ajfand.93.19565

Gonzalez-Gonzalez, C. R., Machado, J., Correia, S., McCartney, A. L., Elmore, J. S. ORCID: https://orcid.org/0000-0002-2685-1773 and Jauregi, P. (2019) Highly proteolytic bacteria from semi-ripened Chiapas cheese elicit angiotensin-I converting enzyme inhibition and antioxidant activity. LWT-Food Science and Technology, 111. pp. 449-456. ISSN 0023-6438 doi: https://doi.org/10.1016/j.lwt.2019.05.039

Hoyles, L., Jiménez-Pranteda, M. L., Chilloux, J., Brial, F., Myridakis, A., Aranias, T., Magnan, C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Sanderson, J. D., Nicholson, J. K., Gauguier, D., McCartney, A. L. and Dumas, M.-E. (2018) Metabolic retroconversion of trimethylamine N-oxide and the gut microbiota. Microbiome, 6. 73. ISSN 2049-2618 doi: https://doi.org/10.1186/s40168-018-0461-0

Hoyles, L., Murphy, J., Neve, H., Heller, K. J., Turton, J. F., Mahony, J., Sanderson, J. D., Hudspith, B., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, McCartney, A. L. and van Sinderen, D. (2015) Klebsiella pneumoniae subsp. pneumoniae–bacteriophage combination from the caecal effluent of a healthy woman. PeerJ, 3. e1061. ISSN 2167-8359 doi: https://doi.org/10.7717/peerj.1061

Thorasin, T., Hoyles, L. and McCartney, A. L. (2015) Dynamics and diversity of the 'Atopobium cluster' in the human faecal microbiota, and phenotypic characterization of 'Atopobium cluster' isolates. Microbiology, 161 (3). pp. 565-579. ISSN 1465-2080 doi: https://doi.org/10.1099/mic.0.000016

Pereira, D. I. A., Aslam, M. F., Frazer, D. M., Schmidt, A., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, McCartney, A. L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Anderson, G. J. and Powell, J. J. (2015) Dietary iron depletion at weaning imprints low microbiome diversity and this is not recovered with oral nano Fe(III). MicrobiologyOpen, 4 (1). pp. 12-27. ISSN 2045-8827 doi: https://doi.org/10.1002/mbo3.213

Ravi, A., Avershina, E., Foley, S. L., Ludvigsen, J., Storrø, O., Øien, T., Johnsen, R., McCartney, A. L., L’Abée-Lund, T. M. and Rudi, K. (2015) The commensal infant gut meta-mobilome as a potential reservoir for persistent multidrug resistance integrons. Scientific Reports, 5. 15317. ISSN 2045-2322 doi: https://doi.org/10.1038/srep15317

Hoyles, L., McCartney, A. L., Neve, H., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Sanderson, J. D., Heller, K. J. and van Sinderen, D. (2014) Characterization of virus-like particles associated with the human faecal and caecal microbiota. Research in Microbiology, 165 (10). pp. 803-812. ISSN 0923-2508 doi: https://doi.org/10.1016/j.resmic.2014.10.006

Inness, V.L., Khoo, C., Gross, K.L., Hoyles, L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and McCartney, A. L. (2013) An assessment of the prebiotic potential of single and blended substrates in anaerobic in vitro batch culture fermentations using canine faecal samples as inocula. International Journal of Probiotics and Prebiotics, 8 (4). p. 133. ISSN 1555-1431

Hoyles, L., Clear, J. A. and McCartney, A. L. (2013) Use of denaturing gradient gel electrophoresis to detect Actinobacteria associated with the human faecal microbiota. Anaerobe, 22. pp. 90-96. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2013.06.001

Jiménez-Pranteda, M. L., Aguilera, M., McCartney, A. L., Hoyles, L., Jiménez-Valera, M., Náder-Marcías, M. E., Ramos-Cormenzana, A. and Monteoliva-Sánchez, M. (2012) Investigation of the impact of feeding Lactobacillus plantarum CRL 1815 encapsulated in microbially derived polymers on the rat faecal microbiota. Journal of Applied Microbiology, 113 (2). pp. 399-410. ISSN 1365-2672 doi: https://doi.org/10.1111/j.1365-2672.2012.05343.x

Hoyles, L., Honda, H., Logan, N. A., Halket, G., La Ragione, R. M. and McCartney, A. L. (2012) Recognition of greater diversity of Bacillus species and related bacteria in human faeces. Research in Microbiology, 163 (1). pp. 3-13. ISSN 0923-2508 doi: https://doi.org/10.1016/j.resmic.2011.10.004

Jia, J., Frantz, N., Khoo, C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A. and McCartney, A. L. (2011) Investigation of the faecal microbiota of geriatric cats. Letters in Applied Microbiology, 53 (3). pp. 288-293. ISSN 1472-765X doi: https://doi.org/10.1111/j.1472-765X.2011.03105.x

Veereman-Wauters, G., Staelens, S., Van de Broek, H., Plaskie, K., Wesling, F., Roger, L. C., McCartney, A. L. and Assam, P. (2011) Physiological and bifidogenic effects of prebiotic supplements in infant formulae. Journal of Pediatric Gastroenterology and Nutrition, 52 (6). pp. 763-771. ISSN 0277-2116 doi: https://doi.org/10.1097/MPG.0b013e3182139f39

Ogué-Bon, E., Khoo, C., Hoyles, L., McCartney, A. L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Rastall, R. A. (2011) In vitro fermentation of rice bran combined with Lactobacillus acidophilus 14 150B or Bifidobacterium longum 05 by the canine faecal microbiota. FEMS microbiology ecology, 75 (3). pp. 365-376. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2010.01014.x

Honda, H., Hoyles, L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Farmer, S., Keller, D. and McCartney, A. L. (2011) Impact of GanedenBC30 (Bacillus coagulans GBI-30, 6086) on population dynamics of the human gut microbiota in a continuous culture fermentation system. International Journal of Probiotics and Prebiotics, 6 (1). pp. 65-72. ISSN 1555-1431

Honda, H., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Farmer, S., Keller, D. and McCartney, A. L. (2011) Use of a continuous culture fermentation system to investigate the effect of GanedenBC30 (Bacillus coagulans GBI-30, 6086) supplementation on pathogen survival in the human gut microbiota. Anaerobe, 17 (1). pp. 36-42. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2010.12.006

Inness, V. L., Khoo, C., Gross, K. L., Hoyles, L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and McCartney, A. L. (2011) Use of static batch culture systems to investigate the fermentation effects of selected oligosaccharides and fibres by the canine faecal microbiota. International Journal of Probiotics and Prebiotics, 6 (1). pp. 57-64. ISSN 1555-1431

Jia, J., Frantz, N., Khoo, C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A. and McCartney, A. L. (2011) Investigation of the faecal microbiota of kittens: monitoring bacterial succession and effect of diet. FEMS Microbiology Ecology, 78 (2). pp. 395-404. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2011.01172.x

Keller, D., Farmer, S., McCartney, A. and Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 (2010) Bacillus coagulans as a probiotic. Food Science and Technology Bulletin: Functional Foods. ISSN 1476-2137

Roger, L. C., Costabile, A., Holland, D. T., Hoyles, L. and McCartney, A. L. (2010) Examination of faecal Bifidobacterium populations in breast- and formula-fed infants during the first 18 months of life. Microbiology, 156 (11). pp. 3329-3341. ISSN 1465-2080 doi: https://doi.org/10.1099/mic.0.043224-0

Roger, L. C. and McCartney, A. L. (2010) Longitudinal investigation of the faecal microbiota of healthy full-term infants using fluorescence in situ hybridization and denaturing gradient gel electrophoresis. Microbiology, 156 (11). pp. 3317-3328. ISSN 1465-2080 doi: https://doi.org/10.1099/mic.0.041913-0

Roberfroid, M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Hoyles, L., McCartney, A. L., Rastall, R., Rowland, I., Wolvers, D., Watztl, B., Szajewska, H., Stahl, B., Guarner, F., Respondek, F., Whelan, K., Coxam, V., Davicco, M., Léotoing, L., Wittrant, Y., Delzenne, N., Cani, P., Neyrinck, A. and Meheust, A. (2010) Prebiotic effects: metabolic and health benefits. British Journal of Nutrition, 104 (S2). S1-S63. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114510003363

Abecia, L., Hoyles, L., Khoo, C., Frantz, N. and McCartney, A. L. (2010) Effects of a novel galactooligosaccharide on the faecal microbiota of healthy and inflammatory bowel disease cats during a randomized, double-blind, cross-over feeding study. International Journal of Probiotics and Prebiotics, 5 (2). pp. 61-68. ISSN 1555-1431

Parracho, H. M. R. T., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Knott, F. ORCID: https://orcid.org/0000-0002-5334-7206, Bosscher, D., Kleerebezem, M. and McCartney, A. L. (2010) A double-blind, placebo-controlled, crossover-designed probiotic feeding study in children diagnosed with autistic spectrum disorders. International Journal of Probiotics and Prebiotics, 5 (2). pp. 69-74. ISSN 1555-1431

Jia, J., Frantz, N., Khoo, C., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Rastall, R. A. and McCartney, A. L. (2010) Investigation of the faecal microbiota associated with canine chronic diarrhoea. FEMS Microbiology Ecology, 71 (2). pp. 304-12. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2009.00812.x

Ogué-Bon, E., Khoo, C., McCartney, A. L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Rastall, R. A. (2010) In vitro effects of synbiotic fermentation on the canine faecal microbiota. FEMS microbiology ecology, 73 (3). pp. 587-600. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2010.00915.x

Abecia, L., McCartney, A. L. and Klinder, A. (2010) In vitro investigation of the effects of tryptophan fermentation products on immune response. Proceedings of the Nutrition Society, 69 (OCE3). E262. ISSN 0029-6651 doi: https://doi.org/10.1017/S0029665110000510

Waldram, A., Holmes, E., Wang, Y.L., Rantalainen, M., Wilson, I.D., Tuohy, K.M., McCartney, A.L., Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 and Nicholson, J.K. (2009) Top-down systems biology modeling of host metabotype-microbiome associations in obese rodents. Journal of Proteome Research, 8 (5). pp. 2361-2375. ISSN 1535-3893 doi: https://doi.org/10.1021/pr8009885

Hoyles, L. and McCartney, A. L. (2009) What do we mean when we refer to Bacteroidetes populations in the human gastrointestinal microbiota? FEMS Microbiology Letters, 299 (2). pp. 175-183. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.2009.01741.x

Boyle, F.G., Lien, E.L., Wrenn, J.M., Marsh, B.B., Anderson, W.I., Angelosanto, F.A. and McCartney, A.L. (2008) Safety evaluation of oligofructose: 13 Week rat study and in vitro mutagenicity. Food and Chemical Toxicology, 46 (9). pp. 3132-3139. ISSN 0278-6915 doi: https://doi.org/10.1016/j.fct.2008.06.079

Drakoularakou, A., Wells, A., Robinson, R.K., Rastall, B., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and McCartney, A. (2007) Acid and bile tolerance, adhesion properties and anti-pathogenic effects of three potential probiotic strains. International Journal of Probiotics and Prebiotics, 2 (4). pp. 185-194. ISSN 1555-1431 (Unpublished)

Inness, V.L., McCartney, A.L., Khoo, C., Gross, K.L. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2007) Molecular characterisation of the gut microflora of healthy and inflammatory bowel disease cats using fluorescence in situ hybridisation with special reference to Desulfovibrio spp. Journal of Animal Physiology and Animal Nutrition, 91 (1-2). pp. 48-53. ISSN 0931-2439 doi: https://doi.org/10.1111/j.1439-0396.2006.00640.x

Parracho, H., McCartney, A.L. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2007) Probiotics and prebiotics in infant nutrition. Proceedings of the Nutrition Society, 66 (3). pp. 405-411. ISSN 0029-6651 doi: https://doi.org/10.1017/S0029665107005678

Tuohy, K.M., Pinart-Gilberga, M., Jones, M., Hoyles, L., McCartney, A.L. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2007) Survivability of a probiotic Lactobacillus casei in the gastrointestinal tract of healthy human volunteers and its impact on the faecal microflora. Journal of Applied Microbiology, 102 (4). pp. 1026-1032. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2006.03154.x

Parracho, H.M.R.T., Bingham, M.O., Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 and McCartney, A.L. (2005) Differences between the gut microflora of children with autistic spectrum disorders and that of healthy children. Journal of Medical Microbiology, 54 (10). pp. 987-991. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.46101-0

Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476, McCartney, A.L. and Rastall, R.A. (2005) Prebiotics and resistance to gastrointestinal infections. British Journal of Nutrition, 93 (S1). S31-S34. ISSN 0007-1145 doi: https://doi.org/10.1079/bjn20041343

Drakoularakou, A., McCartney, A., Rastall, R. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2004) Established and emerging prebiotics and their effects on the gut microflora. Agro Food Industry Hi-Tech, 15 (5). pp. 18-20. ISSN 1722-6996

Salminen, S., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476, McCartney, A. and Isolauri, E. (2004) Influence of mode of delivery on gut microbiota composition in seven year old children. Gut, 53 (9). pp. 1388-1389. ISSN 1468-3288 doi: https://doi.org/10.1136/gut.2004.041640

Vulevic, J., McCartney, A.L., Gee, J.M., Johnson, I.T. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2004) Microbial species involved in production of 1,2-sn-diacylglycerol and effects of phosphatidylcholine on human fecal microbiota. Applied and Environmental Microbiology, 70 (9). pp. 5659-5666. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.70.9.5659-5666.2004

Hoyles, L., Collins, M.D., Falsenz, E., Nikolaitchouk, N. and McCartney, A.L. (2004) Transfer of members of the genus Falcivibrio to the genus Mobiluncus, and emended description of the genus Mobiluncus. Systematic and Applied Microbiology, 27 (1). pp. 72-83. ISSN 0723-2020 doi: https://doi.org/10.1078/0723-2020-00260

Wynne, A.G., McCartney, A.L., Brostoff, J., Hudspith, B.N. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2004) An in vitro assessment of the effects of broad-spectrum antibiotics on the human gut microflora and concomitant isolation of a Lactobacillus plantarum with anti-Candida activities. Anaerobe, 10 (3). pp. 165-169. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2004.03.002

Smejkal, C., Kolida, S., Bingham, M., Gibson, G. ORCID: https://orcid.org/0000-0002-0566-0476 and McCartney, A. (2003) Probiotics and prebiotics in female health. Menopause International, 9 (2). pp. 69-74. ISSN 1754-0453 doi: https://doi.org/10.1258/136218003100322224

Pereira, D.I.A., McCartney, A.L. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2003) An in vitro study of the probiotic potential of a bile-salt-hydrolyzing Lactobacillus fermentum strain, and determination of its cholesterol-lowering properties. Applied and Environmental Microbiology, 69 (8). pp. 4743-4752. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.69.8.4743-4752.2003

McCartney, A. L. (2002) Application of molecular biological methods for studying probiotics and the gut flora. British Journal of Nutrition, 88. s29-s37. ISSN 1475-2662 doi: https://doi.org/10.1079/BJN2002627

Hoyles, L., Inganäs, E., Falsen, E., Drancourt, M., Weiss, N., McCartney, A. L. and Collins, M. D. (2002) Bifidobacterium scardovii sp. nov., from human sources. International Journal of Systematic and Evolutionary Microbiology, 52 (3). pp. 995-999. ISSN 1466-5034 doi: https://doi.org/10.1099/ijs.0.02065-0

Mountzouris, K. C., McCartney, A. L. and Gibson, G. R. (2002) Intestinal microflora of human infants and current trends for its nutritional modulation. British Journal of Nutrition, 87 (5). pp. 405-420. ISSN 1475-2662 doi: https://doi.org/10.1079/BJN2002563

Couteau, D., McCartney, A. L., Gibson, G. R., Williamson, G. and Faulds, C. B. (2001) Isolation and characterization of human colonic bacteria able to hydrolyse chlorogenic acid. Journal of Applied Microbiology, 90 (6). pp. 873-881. ISSN 1365-2672 doi: https://doi.org/10.1046/j.1365-2672.2001.01316.x

Book or Report Section

Hoyles, L. and McCartney, A. (2012) Genus IV. Mobiluncus. In: Whitman, W. B., Goodfellow, M., Kaempfer, P., Busse, H.-J., Trujillo, M.E., Ludwig, W., Suzuki, K. -i. and Parte, A. (eds.) Bergey’s Manual of Systematic Bacteriology: 2nd edition. The Actinobacteria, part A. Bergey's Manual of Systematic Bacteriology, 5. Springer, pp. 126-139. ISBN 9780387950433

Roger, L.C. and McCartney, A.L. (2009) The application of prebiotics and synbiotics in pediatrics. In: Michail, S. and Sherman, P.M. (eds.) Probiotics in pediatric medicine. Nutrition and health series. Humana, Totowa, New Jersey, pp. 307-322. ISBN 9781603272889 doi: https://doi.org/10.1007/978-1-60327-289-6

Parracho, H.M.R.T., Saulnier, D.M., McCartney, A.L. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2008) Introduction to prebiotics. In: Versalovic, J. and Wilson, M. (eds.) Therapeutic microbiology: probiotics and other strategies. American Society for Microbiology Press, Washington, pp. 119-130. ISBN 9781555814038

McCartney, A. (2006) Enumeration and identification of mixed probiotic and lactic acid bacteria starter cultures. In: Tamine, A.Y. (ed.) Probiotic Dairy Products. Society of Dairy Technology. Blackwell Publishing, Oxford, pp. 98-119. ISBN 9781405121248 doi: https://doi.org/10.1002/9780470995785.ch5

Tuohy, K.M. and McCartney, A.L. (2006) Molecular microbial ecology of the human gut. In: Gibson, G.R. and Rastall, R.A. (eds.) Prebiotics: development and application. John Wiley & Sons Ltd, Chichester, pp. 135-155. ISBN 9780470023136

McCartney, A.L. and Gibson, G.R. ORCID: https://orcid.org/0000-0002-0566-0476 (2006) The normal microbiota of the human gastrointestinal tract: history of analysis, succession and dietary influences. In: Ouwehand, A.C. and Vaughan, E.E. (eds.) Gastrointestinal microbiology. Taylor & Francis Group, New York, pp. 51-73. ISBN 9780824726416

Roger, L. C. and McCartney, A. (2005) Prebiotics and the infant microflora. In: Tannock, G. W. (ed.) Probiotics and prebiotics: scientific aspects. Caister Academic Press, Wymondham, pp. 195-216. ISBN 1904455018

McCartney, A.L. (2003) Bifidobacteria In foods. In: Caballero, B., Trugo, L. and Finglas, P.M. (eds.) Encyclopedia of food sciences and nutrition. Academic Press, London, pp. 463-470. ISBN 9780122270550