Baker, L., Lanz, B., Andreola, F., Ampuero, J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Holmes, E. and Deutz, N. (2016) New technologies – new insights into the pathogenesis of hepatic encephalopathy. Metabolic Brain Disease, 31 (6). pp. 1259-1267. ISSN 1573-7365 doi: https://doi.org/10.1007/s11011-016-9906-y

Bindels, L. B., Neyrinck, A. M., Claus, S. P., Le Roy, C. I., Grangette, C., Pot, B., Martinez, I., Walter, J., Cani, P. D. and Delzenne, N. M. (2016) Synbiotic approach restores intestinal homeostasis and prolongs survival in leukaemia mice with cachexia. ISME Journal, 10 (6). pp. 1456-1470. ISSN 1751-7370 doi: https://doi.org/10.1038/ismej.2015.209

Boura, M., Keating, C., Royet, K., Paudyal, R., O’Donoghue, B., O'Byrne, C. P. and Karatzas, K. A. G. (2016) Loss of SigB in Listeria monocytogenes strains EGD-e and 10403S leads to hypersensitivity to hydrogen peroxide in stationary phase under aerobic conditions. Applied and Environmental Microbiology, 82 (15). pp. 4584-4591. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.00709-16

Claus, S. P., Guillou, H. and Ellero-Simatos, S. (2016) The gut microbiota: a major player in the toxicity of environmental pollutants? npj Biofilms and Microbiomes, 2. 16003. ISSN 2055-5008 doi: https://doi.org/10.1038/npjbiofilms.2016.3

Cordoni, G., Woodward, M. J., Wu, H., Alanazi, M., Wallis, T. and La Ragione, R. M. (2016) Comparative genomics of European Avian Pathogenic E. coli (APEC). BMC Genomics, 17 (1). 960. ISSN 1471-2164 doi: https://doi.org/10.1186/s12864-016-3289-7

Costabile, A., Deaville, E. R., Morales, A. M. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2016) Prebiotic potential of a maize-based soluble fibre and impact of dose on the human gut microbiota. PLoS ONE, 11 (1). e0144457. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0144457

Day, M. J., Rodriguez, I., van Essen-Zandbergen, A., Dierikx, C., Kadlec, K., Schink, A. K., Wu, G., Chattaway, M. A., DoNascimento, V., Wain, J., Helmuth, R., Guerra, B., Schwarz, S., Threlfall, J., Woodward, M. J., Coldham, N., Mevius, D. and Woodford, N. (2016) Diversity of STs, plasmids and ESBL genes among Escherichia coli from humans, animals and food in Germany, the Netherlands and the UK. Journal of Antimicrobial Chemotherapy, 71 (5). pp. 1178-1182. ISSN 1460-2091 doi: https://doi.org/10.1093/jac/dkv485

Farshim, P., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Chakrabarti, B. ORCID: https://orcid.org/0000-0002-6649-7895, Givens, I. ORCID: https://orcid.org/0000-0002-6754-6935, Saddy, D. ORCID: https://orcid.org/0000-0001-8501-6076, Kitchen, I., Swann, J. R. and Bailey, A. (2016) Maternal weaning modulates emotional behavior and regulates the gut-brain axis. Scientific Reports, 6. 21958. ISSN 2045-2322 doi: https://doi.org/10.1038/srep21958

Fekete, Á. A., Givens, D. I. ORCID: https://orcid.org/0000-0002-6754-6935 and Lovegrove, J. A. ORCID: https://orcid.org/0000-0001-7633-9455 (2016) Can milk proteins be a useful tool in the management of cardiometabolic health? An updated review of human intervention trials. Proceedings of the Nutrition Society, 75 (3). pp. 328-341. ISSN 1475-2719 doi: https://doi.org/10.1017/S0029665116000264

Freire-Martin, I., Thomas, C. M., Laing, E., AboOun, M., La Ragione, R. M. and Woodward, M. J. (2016) Curing vector for IncI1 plasmids and its use to provide evidence for a metabolic burden of IncI1 CTX-M-1 plasmid pIFM3791 on Klebsiella pneumoniae. Journal of Medical Microbiology, 65 (7). pp. 611-618. ISSN 1473-5644 doi: https://doi.org/10.1099/jmm.0.000271

Frej, A. D., Clark, J., Le Roy, C., Lilla, S., Thomason, P., Otto, G. P., Churchill, G., Insall, R., Claus, S. P., Hawkins, P., Stephens, L. and Williams, R. S. B. (2016) The inositol-3-phosphate synthase biosynthetic enzyme has distinct catalytic and metabolic roles. Molecular and cellular biology, 36 (10). pp. 1464-1479. ISSN 1098-5549 doi: https://doi.org/10.1128/MCB.00039-16

Grimaldi, R., Swann, J. R., Vulevic, J., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Costabile, A. (2016) Fermentation properties and potential prebiotic activity of Bimuno® galacto-oligosaccharide (65 % galacto-oligosaccharide content) on in vitro gut microbiota parameters. British Journal of Nutrition, 116 (3). pp. 480-486. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114516002269

Guergoletto, K. B., Costabile, A., Flores, G., Garcia, S. and Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 (2016) In vitro fermentation of juçara pulp (Euterpe edulis) by human colonic microbiota. Food Chemistry, 196. pp. 251-258. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2015.09.048

Hayward, M. R., Petrovska, L., Jansen, V. A. A. and Woodward, M. (2016) Population structure and associated phenotypes of Salmonella enterica serovars Derby and Mbandaka overlap with host range. BMC Microbiology, 16 (1). Article 15. ISSN 1471-2180 doi: https://doi.org/10.1186/s12866-016-0628-4

Jackson, F., Georgakopoulou, N., Kaluarachchi, M., Kyriakides, M., Andreas, N., Przysiezna, N., Hyde, M. J., Modi, N., Nicholson, J. K., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 and Holmes, E. (2016) Development of a pipeline for exploratory metabolic profiling of infant urine. Journal of Proteome Research, 15 (9). pp. 3432-3440. ISSN 1535-3907 doi: https://doi.org/10.1021/acs.jproteome.6b00234

Kourkoutas, Y., Chorianopoulos, N., Karatzas, K. A. G. and Banat, I. M. (2016) Bioactive natural products 2016. BioMed Research International, 2016. 9749305. ISSN 2314-6141 doi: https://doi.org/10.1155/2016/9749305

Kourkoutas, Y., Chorianopoulos, N., Nisiotou, A., Valdramidis, V. P. and Karatzas, K. A. G. (2016) Editorial. BioMed research international, 2016. pp. 1-2. ISSN 2314-6133 doi: https://doi.org/10.1155/2016/9160375

Le Roy, C. I., Mappley, L. J., La Ragione, R. M., Woodward, M. J. and Claus, S. P. (2016) NMR-based metabolic characterization of chicken tissues and biofluids: a model for avian research. Metabolomics, 12 (10). 157. ISSN 1573-3890 doi: https://doi.org/10.1007/s11306-016-1105-7

Likotrafiti, E., Tuohy, K. M., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Rastall, R. A. (2016) Antimicrobial activity of selected synbiotics targeted for the elderly against pathogenic Escherichia coli strains. International Journal of Food Sciences and Nutrition, 67 (2). pp. 83-91. ISSN 1465-3478 doi: https://doi.org/10.3109/09637486.2015.1134444

Liu, Y., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 (2016) Impact of high fat diets, prebiotics and probiotics on gut microbiota and immune function, with relevance to elderly populations. Nutrition and Aging, 3 (2-4). pp. 171-192. ISSN 1879-7725 doi: https://doi.org/10.3233/NUA-150058

Liu, Y., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476 and Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 (2016) An in vitro approach to study effects of prebiotics and probiotics on the faecal microbiota and selected immune parameters relevant to the elderly. PLoS ONE, 11 (9). e0162604. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0162604

Matysik, S., Le Roy, C. I., Liebisch, G. and Claus, S. P. (2016) Metabolomics of fecal samples: a practical consideration. Trends in Food Science and Technology, 57. pp. 244-255. ISSN 0924-2244 doi: https://doi.org/10.1016/j.tifs.2016.05.011

Merrifield, C. A., Lewis, M. C., Berger, B., Cloarec, O., Heinzmann, S. S., Charton, F., Krause, L., Levin, N. S., Duncker, S., Mercenier, A., Holmes, E., Bailey, M. and Nicholson, J. K. (2016) Neonatal environment exerts a sustained influence on the development of the intestinal microbiota and metabolic phenotype. ISME Journal, 10 (1). pp. 145-157. ISSN 1751-7370 doi: https://doi.org/10.1038/ismej.2015.90

Mora-Ortiz, M., Swain, M. T., Vickers, M. J., Hegarty, M. J., Kelly, R., Smith, L. M. J. and Skøt, L. (2016) De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia. BMC Genomics, 17 (1). 756. ISSN 1471-2164 doi: https://doi.org/10.1186/s12864-016-3083-6

Paudyal, R. and Karatzas, K.-A. G. (2016) Stress adaptation of Listeria monocytogenes in acidic ready-to-eat products. In: Kotzekidou, P. (ed.) Food Hygiene and Toxicology in Ready-to-Eat Foods. Academic Press, London, pp. 167-182. ISBN 9780128019160 doi: https://doi.org/10.1016/B978-0-12-801916-0.00010-8

Pedersen, C., Gallgher, E., Horton, F., Ellis, R. J., Ijaz, U. Z., Wu, H., Jaiyeola, E., Diribe, O., Duparc, T., Cani, P. D., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Hinton, P., Wright, J., La Ragione, R. and Robertson, M. D. (2016) Host-microbiome interactionsin human type 2 diabetes following prebiotic fibre (galactooligosaccharide) intake. British Journal of Nutrition, 116 (11). pp. 1869-1877. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114516004086

Pérez-López, E., Cela, D., Costabile, A., Mateos-Aparicio, I. and Rupérez, P. (2016) In vitro fermentability and prebiotic potential of soyabean Okara by human faecal microbiota. British Journal of Nutrition, 116 (06). pp. 1116-1124. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114516002816

Rodrigues, D., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Sousa, S., Rocha-Santos, T. A. P., Duarte, A. C., Freitas, A. C. and Gomes, A. M. P. (2016) In vitro fermentation and prebiotic potential of selected extracts from seaweeds and mushrooms. LWT Food Science and Technology, 73. pp. 131-139. ISSN 0023-6438 doi: https://doi.org/10.1016/j.lwt.2016.06.004

Tocmo, R. ORCID: https://orcid.org/0009-0007-4850-977X, Liang, D., Wang, C., Lin Poh, J. ORCID: https://orcid.org/0000-0002-5393-7185 and Huang, D. (2016) Organosulfide profile and hydrogen sulfide-releasing capacity of stinky bean (Parkia speciosa) oil: effects of pH and extraction methods. Food Chemistry, 190. pp. 1123-1129. ISSN 1873-7072 doi: https://doi.org/10.1016/j.foodchem.2015.06.072