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Article

Duddigan, S. ORCID: https://orcid.org/0000-0002-6228-4462, Shaw, L. J., Sizmur, T. ORCID: https://orcid.org/0000-0001-9835-7195, Hussain, Z., Jirra, K., Kaliki, H., Sanka, R., Soma, R., Thallam, V., Vattikuti, H. P. and Collins, C. D. (2024) Quantifying the contribution of individual inputs used in Zero Budget Natural Farming. Soil Use and Management, 40 (4). e13126. ISSN 1475-2743 doi: https://doi.org/10.1111/sum.13126

Lu, B., Lunn, J., Yeung, K., Dhandapani, S. ORCID: https://orcid.org/0000-0001-8522-5177, Carter, L., Roose, T., Shaw, L., Nightingale, A. and Niu, X. (2024) Droplet microfluidic-based in situ analyzer for monitoring free nitrate in soil. Environmental Science and Technology. ISSN 1520-5851 doi: https://doi.org/10.1021/acs.est.3c08207

van Midden, C., Harris, J., Shaw, L., Sizmur, T. ORCID: https://orcid.org/0000-0001-9835-7195, Morgan, H. and Pawlett, M. (2024) Immobilisation of anaerobic digestate supplied nitrogen into soil microbial biomass is dependent on lability of high organic carbon materials additives. Frontiers in Sustainable Food Systems, 8. ISSN 2571-581X doi: https://doi.org/10.3389/fsufs.2024.1356469

van Midden, C., Harris, J., Shaw, L., Sizmur, T. ORCID: https://orcid.org/0000-0001-9835-7195, Pawlett, M. and Shaw, L. (2023) The impact of anaerobic digestate on soil life: a review. Applied Soil Ecology, 191. 105066. ISSN 0929-1393 doi: https://doi.org/10.1016/j.apsoil.2023.105066

Davidson, D. J., Lu, F., Faas, L., Dawson, D. M., Warren, G. P., Panovic, I., Montgomery, J. R. D., Ma, X., Bosilkov, B. G., Slawin, A. M. Z., Lebl, T., Chatzifragkou, A. ORCID: https://orcid.org/0000-0002-9255-7871, Robinson, S. ORCID: https://orcid.org/0000-0003-1045-4412, Ashbrook, S. E., Shaw, L. J., Lambert, S., Van Damme, I., Gomez, L. D., Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Westwood, N. J. (2023) Organosolv pretreatment of cocoa pod husks: isolation, analysis and use of lignin from an abundant waste product. ACS Sustainable Chemistry & Engineering, 11 (39). pp. 14323-14333. ISSN 2168-0485 doi: https://doi.org/10.1021/acssuschemeng.2c03670

Al Zadjali, M., Rabiey, M., McMillan, V., Shaw, L. J., Hammond-Kosack, K., Malone, J. G., Mauchline, T. H. and Jackson, R. W. (2023) Characterising the influence of first-year wheat cultivar on pseudomonas selection and function in a take-all infected field. Crops, 3 (3). pp. 195-208. ISSN 2673-7655 doi: https://doi.org/10.3390/crops3030019

Duddigan, S. ORCID: https://orcid.org/0000-0002-6228-4462, Shaw, L. J., Sizmur, T. ORCID: https://orcid.org/0000-0001-9835-7195, Gogu, D., Hussain, Z., Jirra, K., Kaliki, H., Sanka, R., Sohail, M., Soma, R., Thallam, V., Vattikuti, H. and Collins, C. D. (2023) Natural farming improves crop yield in SE India when compared to conventional or organic systems by enhancing soil quality. Agronomy for Sustainable Development, 43 (2). 31. ISSN 1773-0155 doi: https://doi.org/10.1007/s13593-023-00884-x

Adekanmbi, A. A. ORCID: https://orcid.org/0000-0003-3379-4161, Dale, L., Shaw, L. and Sizmur, T. ORCID: https://orcid.org/0000-0001-9835-7195 (2023) Differential temperature sensitivity of intracellular metabolic processes and extracellular soil enzyme activities. Biogeosciences, 20 (11). pp. 2207-2219. ISSN 1726-4170 doi: https://doi.org/10.5194/bg-20-2207-2023

Duddigan, S. ORCID: https://orcid.org/0000-0002-6228-4462, Shaw, L. J., Alexander, P. D. and Collins, C. D. (2022) Effects of application of horticultural soil amendments on decomposition, quantity, stabilisation and quality of soil carbon. Scientific Reports, 12. 17631. ISSN 2045-2322 doi: https://doi.org/10.1038/s41598-022-22451-2

Shannon, V. L., Vanguelova, E. I., Morison, J. I. L., Shaw, L. J. and Clark, J. M. ORCID: https://orcid.org/0000-0002-0412-8824 (2022) The contribution of deadwood to soil carbon dynamics in contrasting temperate forest ecosystems. European Journal of Forest Research, 141. pp. 241-251. ISSN 1612-4677 doi: https://doi.org/10.1007/s10342-021-01435-3

Shu, X., Zou, Y., Shaw, L., Todman, L. ORCID: https://orcid.org/0000-0003-1232-294X, Tibbett, M. ORCID: https://orcid.org/0000-0003-0143-2190 and Sizmur, T. ORCID: https://orcid.org/0000-0001-9835-7195 (2022) Applying cover crop residues as diverse mixtures increases initial microbial assimilation of crop residue-derived carbon. European Journal of Soil Science, 73 (2). e13232. ISSN 1351-0754 doi: https://doi.org/10.1111/ejss.13232

Duddigan, S. ORCID: https://orcid.org/0000-0002-6228-4462, Collins, C. D., Hussain, Z., Osbahr, H. ORCID: https://orcid.org/0000-0002-0130-2313, Shaw, L. J., Sinclair, F., Sizmur, T. ORCID: https://orcid.org/0000-0001-9835-7195, Thallam, V. and Winowiecki, L. A. (2022) Impact of zero budget natural farming on crop yields in Andhra Pradesh, SE India. Sustainability, 14 (3). 1689. ISSN 2071-1050 doi: https://doi.org/10.3390/su14031689

Hollands, C., Shannon, V. L., Sawicka, K., Vanguelova, E. I., Benham, S. E., Shaw, L. J. and Clark, J. M. ORCID: https://orcid.org/0000-0002-0412-8824 (2022) Management impacts on the dissolved organic carbon release from deadwood, ground vegetation and the forest floor in a temperate Oak woodland. Science of the Total Environment, 805. 150399. ISSN 0048-9697 doi: https://doi.org/10.1016/j.scitotenv.2021.150399

Omosigho, H. O., Swart, E., Sizmur, T. P. ORCID: https://orcid.org/0000-0001-9835-7195, Spurgeon, D. J., Svendsen, C. and Shaw, L. J. (2022) Assessing the efficacy of antibiotic treatment to produce earthworms with a suppressed microbiome. European Journal of Soil Biology, 108. 103366. ISSN 1164-5563 doi: https://doi.org/10.1016/j.ejsobi.2021.103366

Shu, X., Zou, Y., Shaw, L. J., Todman, L. ORCID: https://orcid.org/0000-0003-1232-294X, Tibbett, M. ORCID: https://orcid.org/0000-0003-0143-2190 and Sizmur, T. ORCID: https://orcid.org/0000-0001-9835-7195 (2021) Cover crop residue diversity enhances microbial activity and biomass with additive effects on microbial structure. Soil Research, 60 (4). pp. 349-359. ISSN 1838-675X doi: https://doi.org/10.1071/SR21105

Barsoum, N., A'Hara, S. W., Cottrell, J. E., Forster, J., Garcia, M. S. J., Schonrogge, K. and Shaw, L. (2021) Root ectomycorrhizal status of oak trees symptomatic and asymptomatic for Acute Oak Decline in southern Britain. Forest Ecology and Management, 482. 118800. ISSN 0378-1127 doi: https://doi.org/10.1016/j.foreco.2020.118800

Ramirez, D., Shaw, L. J. and Collins, C. D. (2021) Oil sludge washing with surfactants and co-solvents: oil recovery from different types of oil sludges. Environmental Science and Pollution Research, 28 (5). pp. 5867-5879. ISSN 1614-7499 doi: https://doi.org/10.1007/s11356-020-10591-9

Duddigan, S. ORCID: https://orcid.org/0000-0002-6228-4462, Alexander, P. D., Shaw, L. J. ORCID: https://orcid.org/0000-0002-4985-7078 and Collins, C. D. (2021) Effects of repeated application of organic soil amendments on horticultural soil physicochemical properties, nitrogen budget and yield. Horticulturae, 7 (10). 371. ISSN 2311-7524 doi: https://doi.org/10.3390/horticulturae7100371

Adekanmbi, A. A., Shaw, L. J. and Sizmur, T. ORCID: https://orcid.org/0000-0001-9835-7195 (2020) Effect of sieving on ex-situ soil respiration of soils from three land use types. Journal of Soil Science and Plant Nutrition, 20. pp. 912-916. ISSN 0718-9516 doi: https://doi.org/10.1007/s42729-020-00177-2

Duddigan, S. ORCID: https://orcid.org/0000-0002-6228-4462, Alexander, P. D., Shaw, L. J., Sanden, T. and Collins, C. D. (2020) The Tea Bag Index—UK: using citizen/community science to investigate organic matter decomposition rates in domestic gardens. Sustainability, 12 (17). 6895. ISSN 2071-1050 doi: https://doi.org/10.3390/su12176895

Duddigan, S. ORCID: https://orcid.org/0000-0002-6228-4462, Shaw, L. J., Alexander, P. D. and Collins, C. D. (2020) Chemical underpinning of the tea bag index: An examination of the decomposition of tea leaves. Applied and Environmental Soil Science, 2020. 6085180. ISSN 1687-7675 doi: https://doi.org/10.1155/2020/6085180

Pschenyckyj, C. M., Clark, J. M. ORCID: https://orcid.org/0000-0002-0412-8824, Shaw, L. J., Griffiths, R. I. and Evans, C. D. (2020) Effects of acidity on dissolved organic carbon in organic soil extracts, pore water and surface litters. Science of the Total Environment, 703. 135585. ISSN 0048-9697 doi: https://doi.org/10.1016/j.scitotenv.2019.135585

Picchioni, F., Warren, G. P., Lambert, S., Balcombe, K., Robinson, J. S. ORCID: https://orcid.org/0000-0003-1045-4412, Srinivasan, C. ORCID: https://orcid.org/0000-0003-2537-7675, Gomez, L. D., Laura, F., Westwood, N. J., Chatzifragkou, A. ORCID: https://orcid.org/0000-0002-9255-7871, Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Shaw, L. (2020) Valorisation of natural resources and the need for economic and sustainability sssessment: the case of cocoa pod husk in Indonesia. Sustainability, 12 (21). 8962. ISSN 2071-1050 doi: https://doi.org/10.3390/su12218962

Duddigan, S. ORCID: https://orcid.org/0000-0002-6228-4462, Shaw, L. J., Alexander, P. D. and Collins, C. D. (2019) A comparison of physical soil organic matter fractionation methods for amended soils. Applied and Environmental Soil Science, 2019. 3831241. ISSN 1687-7675 doi: https://doi.org/10.1155/2019/3831241

Lu, F., Rodriguez Garcia, J. ORCID: https://orcid.org/0000-0002-4986-3144, Van Damme, I., Westwood, N. J., Shaw, L., Robinson, J. S. ORCID: https://orcid.org/0000-0003-1045-4412, Warren, G., Chatzifragkou, A. ORCID: https://orcid.org/0000-0002-9255-7871, McQueen Mason, S., Gomez, L., Faas, L., Balcombe, K., Srinivasan, C. ORCID: https://orcid.org/0000-0003-2537-7675, Picchioni, F., Hadley, P. and Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 (2018) Valorisation strategies for cocoa pod husk and its fractions. Current Opinion in Green and Sustainable Chemistry, 14. pp. 80-88. ISSN 2452-2236 doi: https://doi.org/10.1016/j.cogsc.2018.07.007

Hughes, D. L., Afsar, A., Laventine, D. M., Shaw, E. J., Harwood, L. M. ORCID: https://orcid.org/0000-0002-8442-7380 and Hodson, M. E. (2018) Metal removal from soil leachates using DTPA-functionalised maghemite nanoparticles, a potential soil washing technology. Chemosphere, 209. pp. 480-488. ISSN 1879-1298 doi: https://doi.org/10.1016/j.chemosphere.2018.06.121

Gougoulias, C., Meade, A. ORCID: https://orcid.org/0000-0001-7095-7711 and Shaw, L. (2018) Apportioning bacterial carbon source utilization in soil using 14C isotope analysis of FISH-targeted bacterial populations sorted by Fluorescence Activated Cell Sorting (FACS): 14C-FISH-FACS. Environmental Microbiology Reports, 10 (3). pp. 245-254. ISSN 1758-2229 doi: https://doi.org/10.1111/1758-2229.12631

Dorati, F., Barrett, G. A. ORCID: https://orcid.org/0000-0003-1509-0179, Sanchez-Contreras, M., Arseneault, T., San Jose, M., Studholme, D., Murillo, J., Caballero, P., Waterfield, N., Arnold, D., Shaw, L. J. and Jackson, R. W. (2018) Coping with environmental eukaryotes; identification of pseudomonas syringae genes during the interaction with alternative hosts or predators. Microorganisms, 6 (32). pp. 1-23. ISSN 2076-2607 doi: https://doi.org/10.3390/microorganisms6020032

Fukumasu, J. and Shaw, L. (2017) The role of macro-aggregation in regulating enzymatic depolymerization of soil organic nitrogen. Soil Biology and Biochemistry, 115. pp. 100-108. ISSN 0038-0717 doi: https://doi.org/10.1016/j.soilbio.2017.08.008

Roberts, R. L., Jackson, R. W., Mauchline, T. H., Hirsch, P. R., Shaw, L. J., Doring, T. J. and Jones, H. E. (2017) Is there sufficient Ensifer and Rhizobium species diversity in UK farmland soils to support red clover (Trifolium pratense), white clover (T. repens), lucerne (Medicago sativa) and black medic (M. lupulina)? Applied Soil Ecology, 120. pp. 35-43. ISSN 0929-1393 doi: https://doi.org/10.1016/j.apsoil.2017.06.030

Hughes, D. L., Asfar, A., Harwood, L. M. ORCID: https://orcid.org/0000-0002-8442-7380, Jiang, T., Laventine, D. M., Shaw, L. J. and Hodson, M. E. (2017) Adsorption of Pb and Zn from binary metal solutions and in the presence of dissolved organic carbon by DTPA-functionalised, silica-coated magnetic nanoparticles. Chemosphere, 183. pp. 519-527. ISSN 0045-6535 doi: https://doi.org/10.1016/j.chemosphere.2017.05.146

Rabiey, M., Ullah, I. ORCID: https://orcid.org/0000-0002-9367-6741, Shaw, L. J. and Shaw, M. W. (2017) Potential ecological effects of Piriformospora indica, a possible biocontrol agent, in UK agricultural systems. Biological Control, 104. pp. 1-9. ISSN 1049-9644 doi: https://doi.org/10.1016/j.biocontrol.2016.10.005

Roche, L., Forrestal, P. J., Lanigan, G. J., Richards, K. G., Shaw, L. J. and Wall, D. P. (2016) Impact of fertiliser nitrogen formulation, and N stabilisers on nitrous oxide emissions in spring barley. Agriculture, Ecosystems and Environment, 233. pp. 229-237. ISSN 0167-8809 doi: https://doi.org/10.1016/j.agee.2016.08.031

Jones, F. P., Clark, I. M., King, R., Shaw, L. J., Woodward, M. J. and Hirsch, P. R. (2016) Novel European free-living, non-diazotrophic Bradyrhizobium isolates from contrasting soils that lack nodulation and nitrogen fixation genes - a genome comparison. Scientific Reports, 6. 25858. ISSN 2045-2322 doi: https://doi.org/10.1038/srep25858

Villada, A., Vanguelova, E. I., Verhoef, A. ORCID: https://orcid.org/0000-0002-9498-6696 and Shaw, L. (2016) Effect of air-drying pre-treatment on the characterization of forest soil carbon pools. Geoderma, 265. pp. 53-61. ISSN 0016-7061 doi: https://doi.org/10.1016/j.geoderma.2015.11.003

Kowalczyk, A., Eyice, Ö., Schäfer, H., Price, O. R., Finnegan, C. J., van Egmond, R. A., Shaw, L. J., Barrett, G. ORCID: https://orcid.org/0000-0003-1509-0179 and Bending, G. D. (2015) Characterization of para-Nitrophenol-degrading bacterial communities in river water by using functional markers and stable isotope probing. Applied and Environmental Microbiology, 81 (19). pp. 6890-6900. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.01794-15

Olimah, J. A., Shaw, L. J. and Hodson, M. E. (2015) Does ochre have the potential to be a remedial treatment for As-contaminated soils? Environmental Pollution, 206. pp. 150-158. ISSN 0269-7491 doi: https://doi.org/10.1016/j.envpol.2015.06.011

Afsar, A., Harwood, L. M. ORCID: https://orcid.org/0000-0002-8442-7380, Hudson, M. J., Hodson, M. E. and Shaw, E. J. (2014) Neocuproine-functionalized silica-coated magnetic nanoparticles for extraction of copper(II) from aqueous solution. Chemical Communications, 50 (56). pp. 7477-7480. ISSN 1359-7345 doi: https://doi.org/10.1039/c4cc01250j

Gougoulias, C., Clark, J. M. ORCID: https://orcid.org/0000-0002-0412-8824 and Shaw, L. J. (2014) The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems. Journal of the Science of Food and Agriculture, 94 (12). pp. 2362-2371. ISSN 0022-5142 doi: https://doi.org/10.1002/jsfa.6577

Swaine, M., Obrike, R., Clark, J. ORCID: https://orcid.org/0000-0002-0412-8824 and Shaw, L. (2013) Biochar alteration of the sorption of substrates and products in Soil Enzyme Assays. Applied and Environmental Soil Science, 2013. 968682. ISSN 1687-7667 doi: https://doi.org/10.1155/2013/968682

Tiltson, E.M., Collins, C., Mitchell, G., Princivalle, J. and Shaw, L. (2013) Nanoscale zerovalent iron alters soil bacterial community structure and inhibits chloroaromatic biodegradation potential in Aroclor 1242-contaminated soil. Environmental Pollution, 173. pp. 38-46. ISSN 0269-7491 doi: https://doi.org/10.1016/j.envpol.2012.09.018

Gougoulias, C. and Shaw, L. J. (2012) Evaluation of the environmental specificity of fluorescence in situ hybridization (FISH) using fluorescence-activated cell sorting (FACS) of probe (PSE1284)-positive cells extracted from rhizosphere soil. Systematic and Applied Microbiology, 35 (8). pp. 533-540. ISSN 0723-2020 doi: https://doi.org/10.1016/j.syapm.2011.11.009 (Special Issue: Fluorescence In Situ Hybridization (FISH))

Veresoglou, S. D., Shaw, L. J., Hooker, J. E. and Sen, R. (2012) Arbuscular mycorrhizal modulation of diazotrophic and denitrifying microbial communities in the (mycor)rhizosphere of Plantago lanceolata. Soil Biology and Biochemistry, 53. pp. 78-81. ISSN 0038-0717 doi: https://doi.org/10.1016/j.soilbio.2012.05.007

Veresoglou, S. D., Shaw, E. J. and Sen, R. (2011) Glomus intraradices and Gigaspora margarita arbuscular mycorrhizal associations differentially affect nitrogen and potassium nutrition of Plantago lanceolata in a low fertility dune soil. Plant and Soil, 340 (1-2). pp. 481-490. ISSN 0032-079X doi: https://doi.org/10.1007/s11104-010-0619-4

Cullen, L. G., Tilston, E. L., Mitchell, G. R., Collins, C. D. and Shaw, L. J. (2010) Assessing the impact of nano- and micro-scale zerovalent iron particles on soil microbial activities: Particle reactivity interferes with assay conditions and interpretation of genuine microbial effects. Chemosphere, 82 (11). pp. 1675-1682. ISSN 0045-6535 doi: https://doi.org/10.1016/j.chemosphere.2010.11.009

Rodríguez-Cruz, S., Bælum, J., Shaw, L. J., Sørensen, S. R., Shi, S., Aspray, T., Jacobsen, C. and Bending, G. D. (2010) Biodegradation of the herbicide mecoprop-p with soil depth and its relationship with class III tfdA genes. Soil Biology and Biochemistry, 42 (1). pp. 32-39. ISSN 0038-0717 doi: https://doi.org/10.1016/j.soilbio.2009.09.018

Watkins, A. J., Nicol, G. W. and Shaw, L. J. (2009) Use of an artificial root to examine the influence of 8-hydroxyquinoline on soil microbial activity and bacterial community structure. Soil Biology & Biochemistry, 41 (3). pp. 580-585. ISSN 0038-0717 doi: https://doi.org/10.1016/j.soilbio.2008.12.019

Shaw, L.J. and Hooker, J. E. (2008) The fate and toxicity of the flavonoids naringenin and formononetin in soil. Soil Biology & Biochemistry, 40 (2). pp. 528-536. ISSN 0038-0717 doi: https://doi.org/10.1016/j.soilbio.2007.09.021

Shaw, L.J., Nicol, G.W., Smith, Z., Fear, J., Prosser, J.I. and Baggs, E.M. (2006) Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway. Environmental Microbiology, 8 (2). pp. 214-222. ISSN 1462-2912 doi: https://doi.org/10.1111/j.1462-2920.2005.00882.x

Shaw, L. J., Morris, P. and Hooker, J. E. (2006) Perception and modification of plant flavonoid signals by rhizosphere microorganisms. Environmental Microbiology, 8 (11). pp. 1867-1880. ISSN 1462-2912 doi: https://doi.org/10.1111/j.1462-2920.2006.01141.x

Book or Report Section

Shaw, L.J. and Burns, R.G. (2007) Influence of the rhizosphere on the biodegradation of organic xenobiotics - a case study with 2,4-dichlorophenoxyacetic acid. In: Heipieper, H. (ed.) Bioremediation of Soils Contaminated with Aromatic Compounds: effects of rhizosphere, bioavailability, gene regulation and stress adaptation. Springer, Berlin, pp. 5-30. ISBN 9781402056918 doi: https://doi.org/10.1007/978-1-4020-5693-2_1

Shaw, L. J. and Burns, R.G. (2006) Enzyme activity profiles and soil quality. In: Bloem, J., Hopkins, D. and Benedetti, A. (eds.) Microbiological Methods for Assessing Soil Quality. CABI, Wallingford, pp. 158-172.

Book

Givens, G.I., Baxter, S., Minihane, A.M. and Shaw, E., eds. (2008) Health Benefits of Organic Food: effects of the environment. CABI, Wallingford, pp336. ISBN 9781845934590

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