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Items where Division is "Faculty of Life Sciences"

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Number of items at this level: 59.

Baba-Dikwa, A., Thompson, D., Spencer, N. J., Andrews, S. C. and Watson, K. A. (2008) Overproduction, purification and preliminary X-ray diffraction analysis of YncE, an iron-regulated Sec-dependent periplasmic protein from Escherichia coli. Acta Crystallographica Section F-Structural Biology and Crystallization Communications, 64. pp. 966-969. ISSN 1744-3091 doi: 10.1107/s1744309108029515

Bamford, V. A., Armour, M., Mitchell, S. A., Cartron, M., Andrews, S. C. and Watson, K. A. (2008) Preliminary X-ray diffraction analysis of YqjH from Escherichia coli: a putative cytoplasmic ferri-siderophore reductase. Acta Crystallographica Section F-Structural Biology and Crystallization Communications, 64 (9). pp. 792-796. ISSN 1744-3091 doi: 10.1107/S174430910802352X

Bauer, C., Cramer, R. and Schuchhardt, J. (2011) Evaluation of peak-picking algorithms for protein mass spectrometry. In: Hamacher, M., Eisenacher, M. and Stephan, C. (eds.) Data mining in proteomics: from standards to applications. Methods in molecular biology, 696. Humana Press, USA, pp. 341-352. ISBN 9781607619864 doi: 10.1007/978-1-60761-987-1_22

Bauer, C., Kleinjung, F., Smith, C. J., Towers, M. W., Tiss, A., Chadt, A., Dreja, T., Beule, D., Al-Hasani, H., Reinert, K., Schuchhardt, J. and Cramer, R. (2011) Biomarker discovery and redundancy reduction towards classification using a multi-factorial MALDI-TOF MS T2DM mouse model dataset. BMC Bioinformatics, 12. 140. ISSN 1471-2105 doi: 10.1186/1471-2105-12-140

Bindschedler, L. V. and Cramer, R. (2011) Fully automated software solution for protein quantitation by global metabolic labeling with stable isotopes. Rapid Communications in Mass Spectrometry, 25 (11). pp. 1461-1471. ISSN 1097-0231 doi: 10.1002/rcm.4872

Bindschedler, L. V. and Cramer, R. (2011) Quantitative plant proteomics. PROTEOMICS, 11 (4). pp. 756-775. ISSN 1615-9861 doi: 10.1002/pmic.201000426

Bindschedler, L. V., Burgis, T. A., Mills, D. J. S., Ho, J. T. C., Cramer, R. and Spanu, P. D. (2009) In planta proteomics and proteogenomics of the biotrophic barley fungal pathogen blumeria graminis f. sp hordei. Molecular & Cellular Proteomics, 8 (10). pp. 2368-2381. ISSN 1535-9476 doi: 10.1074/mcp.M900188-MCP200

Bindschedler, L. V., McGuffin, L. J., Burgis, T. A., Spanu, P. D. and Cramer, R. (2011) Proteogenomics and in silico structural and functional annotation of the barley powdery mildew Blumeria graminis f. sp. hordei. Methods, 54 (4). pp. 432-441. ISSN 1046-2023 doi: 10.1016/j.ymeth.2011.03.006

Bindschedler, L. V., Palmblad, M. and Cramer, R. K. (2006) First-dimension separation with the MicroRotoforTM cell prior to SDS-PAGE and LC-MS/MS analysis. Bio-Rad Bulletin, 5451. pp. 1-4.

Bindschedler, L. V., Smith, C. J. and Cramer, R. K. (2011) Quantitative plant proteomics using hydroponic isotope labeling of entire plants (HILEP). In: Ivanov, A. R. and Lazarev, A. V. (eds.) Sample preparation in biological mass spectrometry. Springer, New York. ISBN 9789400707580

Bindschedler, L. V., Towers, M. and Cramer, R. K. (2009) Hydroponic isotope labeling of entire plants (HILEP) for quantitative plant proteomics. In: 55th ASMS Conference on Mass Spectrometry, 3rd - 7th June 2007, Indianapolis, USA.

Bindschedler, L.V., Palmblad, M. and Cramer, R. (2008) Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Phytochemistry, 69 (10). pp. 1962-1972. ISSN 0031-9422 doi: 10.1016/j.phytochem.2008.04.007

Browning, K., Carpenter, E., Watson, K., Coggins, J., Hawkins, A., Koch, M. and Svergun, D. (2003) Twists and turns: a tale of two shikimate-pathway enzymes. Biochemical Society Transactions, 31 (3). pp. 543-547. ISSN 1470-8752

Cartron, M. L., Mitchell, S., Woodhall, M. R., Andrews, S. C. and Watson, K. A. (2007) Preliminary X-ray diffraction analysis of YcdB from Escherichia coli: a novel haem-containing and Tat-secreted periplasmic protein with a potential role in iron transport. Acta Crystallographica Section F-Structural Biology and Crystallization Communications, 63. pp. 37-41. ISSN 1744-3091 doi: 10.1107/s174430910604509x

Castelletto, V., Hamley, I.W. and Harris, P.J.F. (2008) Self-assembly in aqueous solution of a modified amyloid beta peptide fragment. Biophysical Chemistry, 138 (1-2). pp. 29-35. ISSN 0301-4622 doi: 10.1016/j.bpc.2008.08.007

Castelletto, V., Hamley, I.W., Harris, P.J.F., Olsson, U. and Spencer, N. (2009) Influence of the solvent on the self-assembly of a modified amyloid beta peptide fragment. I. Morphological investigation. Journal of Physical Chemistry B, 113 (29). pp. 9978-9987. ISSN 1520-6106 doi: 10.1021/jp902860a

Castelletto, V., Nutt, D. R., Hamley, I. W., Bucak, S., Cenker, Ç. and Olsson, U. (2010) Structure of single-wall peptide nanotubes: in situ flow aligning X-ray diffraction. Chemical Communications, 46 (34). pp. 6270-6272. ISSN 1359-7345 doi: 10.1039/c0cc00212g

Dobreva, M. A., Frazier, R. A., Mueller-Harvey, I., Clifton, L.A., Gea, A. and Green, R. J. (2011) Binding of pentagalloyl glucose to two globular proteins occurs via multiple surface sites. Biomacromolecules, 12 (3). pp. 710-715. ISSN 1525-7797 doi: 10.1021/bm101341s

Gammerman, A., Vovk, V., Burford, B., Nouretdinov, I., Luo, Z.Y., Chervonenkis, A., Waterfield, M., Cramer, R., Tempst, P., Villanueva, J., Kabir, M., Camuzeaux, S., Timms, J., Menon, U. and Jacobs, I. (2009) Serum proteomic abnormality predating screen detection of ovarian cancer. Computer Journal, 52 (3). pp. 326-333. ISSN 0010-4620 doi: 10.1093/comjnl/bxn021

Gea, A., Stringano, E., Brown, R. H. and Mueller-Harvey, I. (2011) In situ analysis and structural elucidation of sainfoin (Onobrychis viciifolia) tannins for high-throughput germplasm screening. Journal of Agricultural and Food Chemistry, 59 (2). pp. 495-503. ISSN 0021-8561 doi: 10.1021/jf103609p

Hamley, I. W., Castelletto, V., Moulton, C., Myatt, D., Siligardi, G., Oliveira, C. L. P., Pedersen, J. S., Abutbul, I. and Danino, D. (2010) Self-assembly of a modified amyloid peptide fragment: pH-responsiveness and nematic phase formation. Macromolecular Bioscience, 10 (1). pp. 40-48. ISSN 1616-5187 doi: 10.1002/mabi.200900217

Hamley, I. W., Castelletto, V., Moulton, C., Rodriguez-Perez, J., Squires, A., Eralp, T., Held, G., Hicks, M. and Rodger, A. (2010) Alignment of a model amyloid peptide fragment in bulk and at a solid surface. Journal of Physical Chemistry B, 114 (24). pp. 8244-8254. ISSN 1520-6106 doi: 10.1021/jp101374e

Jacob, R. J., Thompson, A. and Cramer, R. (2005) A preliminary comparative analysis of the H. sapiens saliva proteome between cysteine fractionation,performic acid oxidation LC/MALDI/MS/MS and LC/ESI/MS/MS. In: 53rd ASMS conference on mass spectrometry and allied topics, 5-9 Jun 2005, San Antonio, TX. (Unpublished)

Jin, J., Alimbetov, D., George, T., Gordon, M. H. and Lovegrove, J. A. (2011) A randomised trial to investigate the effects of acute consumption of a blackcurrant juice drink on markers of vascular reactivity and bioavailability of anthocyanins in human subjects. European Journal of Clinical Nutrition, 65. pp. 849-856. ISSN 0954-3007 doi: 10.1038/ejcn.2011.55

Jin, J., Koroleva, O., Gibson, T. M., Swanston, J., Magan, J., Zhang, Y. , Rowland, I. R. and Wagstaff, C. (2009) Analysis of Phytochemical Composition and Chemoprotective Capacity of Rocket (Eruca sativa and Diplotaxis tenuifolia) Leafy Salad Following Cultivation in Different Environments. Journal of Agricultural and Food Chemistry , 57 (12). pp. 5227-5234. ISSN 0021-8561 doi: DOI:10.1021/jf9002973

Koroleva, O., Calder, G., Pendle, A., Kim, S., Lewandowska, D., Simpson, C., Jones, I. M., Brown, J. and Shaw, P. (2009) Dynamic behavior of Arabidopsis eif4a-iii, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia. Plant Cell, 21 (5). 1592 -1606. ISSN 1040-4651 doi: DOI:10.1105/tpc.108.060434

Koroleva, O. A. and Cramer, R. (2011) Single-cell proteomic analysis of glucosinolate-rich S-cells in Arabidopsis thaliana. Methods, 54 (4). pp. 413-423. ISSN 1046-2023 doi: 10.1016/j.ymeth.2011.06.005

Koroleva, O. A., Gibson, T. M., Cramer, R. and Stain, C. (2010) Glucosinolate-accumulating S-cells in Arabidopsis leaves and flower stalks undergo programmed cell death at early stages of differentiation. The Plant Journal, 64 (3). pp. 456-469. ISSN 0960-7412 doi: 10.1111/j.1365-313X.2010.04339.x

Mathewson, A. C., Bishop, A., Yao, Y., Kemp, F., Ren, J., Chen, H., Xu, X., Berkhout, B., van der Hoek, L. and Jones, I. M. (2008) Interaction of severe acute respiratory syndrome-coronavirus and NL63 coronavirus spike proteins with angiotensin converting enzyme-2. Journal of General Virology, 89. pp. 2741-2745. ISSN 0022-1317 doi: 10.1099/vir.0.2008/003962-0

Nandal, A., Huggins, C. C. O., Woodhall, M. R., McHugh, J., Rodríguez-Quiñones, F., Quail, M. A., Guest, J. R. and Andrews, S. C. (2010) Induction of the ferritin gene (ftnA) of Escherichia coli by Fe2+–Fur is mediated by reversal of H-NS silencing and is RyhB independent. Molecular Microbiology, 75 (3). pp. 637-657. ISSN 0950-382X doi: 10.1111/j.1365-2958.2009.06977.x

Ortiz-Chao, P., Gomez-Ruiz, J.A., Rastall, R.A., Mills, D., Cramer, R., Pihlanto, A., Korhonen, H. and Jauregi, P. (2009) Production of novel ACE inhibitory peptides from beta-lactoglobulin using Protease N Amano. International Dairy Journal, 19 (2). pp. 69-76. ISSN 0958-6946 doi: 10.1016/j.idairyj.2008.07.011

Palmblad, M., Bindschedler, L. V., Gibson, T. M. and Cramer, R. K. (2006) Comparison of bottom-up protein identification methods. In: 54th ASMS Conference on Mass Spectrometry, 28th May - 1st June 2006, Seattle USA.

Palmblad, M., Bindschedler, L.V. and Cramer, R. (2007) Quantitative proteomics using uniform N-15-labeling, MASCOT, and the trans-proteomic pipeline. Proteomics, 7 (19). pp. 3462-3469. ISSN 1615-9853 doi: 10.1002/pmic.200700180

Palmblad, M., Bindschedler, L.V., Gibson, T. M. and Cramer, R. (2006) Automatic internal calibration in liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry of protein digests. Rapid Communications in Mass Spectrometry, 20 (20). pp. 3076-3080. ISSN 0951-4198 doi: 10.1002/rcm.2707

Palmblad, M., Mills, D. J. and Bindschedler, L. V. (2008) Heat-shock response in Arabidopsis thaliana explored by multiplexed quantitative proteomics using differential metabolic labeling. Journal of Proteome Research, 7 (2). pp. 780-785. ISSN 1535-3893 doi: 10.1021/pr0705340

Palmblad, M., Mills, D. J., Bindschedler, L.V. and Cramer, R. (2007) Chromatographic alignment of LC-MS and LC-MS/MS datasets by genetic algorithm feature extraction. Journal of the American Society for Mass Spectrometry, 18 (10). pp. 1835-1843. ISSN 1044-0305 doi: 10.1016/j.jasms.2007.07.018

Palmblad, M., Towers, M. and Cramer, R. (2007) Multiplexed quantitative proteomics using differential metabolic 15N-labeling. In: 55th ASMS Conference on Mass Spectrometry, 3-7 June 2007, Indianapolis, USA.

Palmbland, M., Towers, M. and Cramer, R. (2007) Investigation of liquid MALDI and optimization for instrument tuning and quantitative measurements. In: 55th ASMS Conference on Mass Spectrometry, 3- 7 June 2007, Indianapolis, USA.

Pellikaan, W. F., Stringano, E., Leenaars, J., Bongers, D. J. G. M., Van Laar-Van Schuppen, S., Plant, J. and Mueller-Harvey, I. (2011) Evaluating the effects of tannins on the extent and rate of in vitro measured gas and methane production using the Automated Pressure Evaluation System (APES). Animal Feed Science and Technology, 166-167. pp. 377-390. ISSN 0377-8401 doi: 10.1016/j.anifeedsci.2011.04.072

Pereira, J. L., Hill, C. J., Sibly, R. M., Bolshakov, V. N., Gonçalves, F., Heckmann, L.-H. and Callaghan, A. (2010) Gene transcription in Daphnia magna: effects of acute exposure to a carbamate insecticide and an acetanilide herbicide. Aquatic Toxicology , 97 (3). pp. 268-76. ISSN 0166-445X doi: 10.1016/j.aquatox.2009.12.023

Rajasekaran, M. B., Mitchell, S. A., Gibson, T. M., Hussain, R., Siligardi, G., Andrews, S. C. and Watson, K. A. (2010) Isolation and characterisation of EfeM, a periplasmic component of the putative EfeUOBM iron transporter of Pseudomonas syringae pv. syringae. Biochemical and Biophysical Research Communications, 398 (3). pp. 366-371. ISSN 0006-291X doi: 10.1016/j.bbrc.2010.06.072

Rajasekaran, M. B., Nilapwar, S., Andrews, S. C. and Watson, K. A. (2010) EfeO-cupredoxins: major new members of the cupredoxin superfamily with roles in bacterial iron transport. BioMetals, 23 (1). pp. 1-17. ISSN 0966-0844 doi: 10.1007/s10534-009-9262-z

Sinclair, H. R., Kemp, F., de Slegte, J., Gibson, G. R. and Rastall, R. A. (2009) Carbohydrate-based anti-adhesive inhibition of Vibrio cholerae toxin binding to GM1-OS immobilized into artificial planar lipid membranes. Carbohydrate Research, 344 (15). pp. 1968-1974. ISSN 0008-6215 doi: 10.1016/j.carres.2009.06.038

Sinclair, H.R., Smejkal, C.W., Glister, C., Kemp, F., van den Heuvel, E., de Slegte, J., Gibson, G.R. and Rastall, R.A. (2008) Sialyloligosaccharides inhibit cholera toxin binding to the GM1 receptor. Carbohydrate Research, 343 (15). pp. 2589-2594. ISSN 0008-6215 doi: 10.1016/j.carres.2008.07.008

Spanu, P. D., Abbott, J. C., Amselem, J., Burgis, T. A., Soanes, D. M., Stuber, K., Loren van Themaat, E. V., Brown, J. K.M., Butcher, S. A., Gurr, S. J., Lebrun, M.-H., Ridout, C. J., Schulze-Lefert, P., Talbot, N. J., Ahmadinejad, N., Ametz, C., Barton, G. R., Benjdia, M., Bidzinski, P., Bindschedler, L. V., Both, M., Brewer, M. T., Cadle-Davidson, L., Cadle-Davidson, M. M., Collemare, J., Cramer, R. K., Frenkel, O., Godfrey, D., Harriman, J., Hoede, C., King, B. C., Klages, S., Kleemann, J., Knoll, D., Koti, P. S., Kreplak, J., Lopez-Ruiz, F. J., Lu, X., Maekawa, T., Mahanil, S., Micali, C., Milgroom, M. G., Montana, G., Noir, S., O'Connell, R. J., Oberhaensli, S., Parlange, F., Pedersen, C., Quesneville, H., Reinhardt, R., Rott, M., Sacristan, S., Schmidt, S. M., Schon, M., Skamnioti, P., Sommer, H., Stephens, A., Takahara, H., Thordal-Christensen, H., Vigouroux, M., Wessling, R., Wicker, T. and Panstruga, R. (2010) Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science, 330 (6010). pp. 1543-1546. ISSN 1095-9203 doi: 10.1126/science.1194573

Stringano, E., Cramer, R., Hayes, W., Smith, C., Gibson, T. and Mueller-Harvey, I. (2011) Deciphering the complexity of sainfoin (Onobrychis viciifolia) proanthocyanidins by MALDI-TOF mass spectrometry with a judicious choice of isotope patterns and matrixes. Analytical Chemistry, 83 (11). pp. 4147-4153. ISSN 0003-2700 doi: 10.1021/ac2003856

Stringano, E., Gea, A., Cramer, R. , Hayes, W. and Mueller-Harvey, I. (2010) Structural diversity of sainfoin (Onobrychis viciifolia) tannins. In: 25th International Conference on Polyphenols, 24th - 27th August 2010, Montpellier, France.

Stringano, E., Hayot, C., Smith, L., Theodoridou, K., Aufrere, J., Brown, R., Hayes, W., Cramer, R. and Mueller-Harvey, I. (2010) Thiolytic screening method for exploring condensed tannin variation in a unique sainfoin germplasm bank. Planta Medica, 76 (12). 0_3. ISSN 1439-0221 doi: 10.1055/s-0030-1264189

Timms, J. F., Cramer, R. , Camuzeaux, S., Tiss, A., Smith, C., Burford, B., Nouretdinov, I., Devetyarov, D., Gentry-Maharaj, A., Ford, J., Luo, Z., Gammerman, A., Menon, U. and Jacobs, I. (2010) Peptides generated ex vivo from serum proteins by tumor-specific exopeptidases are not useful biomarkers in ovarian cancer. Clinical Chemistry, 56 (2). pp. 262-271. ISSN 1530-8561 doi: 10.1373/clinchem.2009.133363

Timms, J. F., Menon, U., Devetyarov, D., Tiss, A., Camuzeaux, S., McCurrie, K., Nouretdinov, I., Burford, B., Smith, C., Gentry-Maharaj, A., Hallett, R., Ford, J., Luo, Z., Vovk, V., Gammerman, A., Cramer, R. and Jacobs, I. (2011) Early detection of ovarian cancer in samples pre-diagnosis using CA125 and MALDI-MS peaks. Cancer Genomics and Proteomics, 8 (6). pp. 289-305. ISSN 1790-6245

Tiss, A., Smith, C., Camuzeaux, S., Kabir, M., Gayther, S., Menon, U., Waterfield, M., Timms, J.,, Jacobs, I. and Cramer, R. (2007) Serum peptide profiling using MALDI mass spectrometry. Proteomics, 7 (S1). pp. 77-89. ISSN 1615-9853 doi: 10.1002/pmic.200700746

Tiss, A., Smith, C. J. and Cramer, R. (2011) MALDI MS-based biomarker profiling of blood samples. In: Ivanov, A. R. and Lazarev, A. V. (eds.) Sample preparation in biological mass spectrometry. Springer, New York, pp. 733-747. ISBN 9789400707580

Tiss, A., Smith, C., Menon, U., Jacobs, I., Timms, J. F. and Cramer, R. (2010) A well-characterised peak identification list of MALDI MS profile peaks for human blood serum. Proteomics, 10 (18). pp. 3388-3392. ISSN 1615-9853 doi: 10.1002/pmic.201000100

Tiss, A., Timms, J. F., Smith, C. J., Devetyarov , D., Gentry-Maharaj, A., Camuzeaux, S., Burford, B., Nouretdinov, I., Ford, J., Luo, Z., Jacobs, I., Menon, U., Gammerman, A. and Cramer, R. K. (2010) Highly accurate detection of ovarian cancer using CA125 but limited improvement with serum matrix-assisted laser desorption/ionization time-of-flight mass spectrometry profiling. International Journal of Gynecological Cancer, 20 (9). pp. 1518-1524. ISSN 1048-891x doi: 10.1111/IGC.0b013e3181fc1990

Towers, M. W., McKendrick, J. E. and Cramer, R. (2010) Introduction of 4-chloro-alpha-cyanocinnamic acid liquid matrices for high sensitivity UV-MALDI MS. Journal of Proteome Research, 9 (4). pp. 1931-1940. ISSN 1535-3893 doi: 10.1021/pr901089j

Wright, B., Gibson, T. , Spencer, J. , Lovegrove, J. A. and Gibbins, J. M. (2010) Platelet-mediated metabolism of the common dietary flavonoid, quercetin. PLoS ONE, 5 (3). e9673. ISSN 1932-6203 doi: DOI:10.1371/journal.pone.0009673

Wright, B., Moraes, L. A., Kemp, C. F., Mullen, W., Crozier, A., Lovegrove, J. A. and Gibbins, J. M. (2010) A structural basis for the inhibition of collagen-stimulated platelet function by quercetin and structurally related flavonoids. British Journal of Pharmacology, 159. pp. 1312-1325. ISSN 1476-5381 doi: 10.1111/j.1476-5381.2009.00632.x

Yu, X., Visweswaran, G. R., Duck, Z., Marupakula, S., MacIntyre, S., Knight, S. D. and Zavialov, A. V. (2009) Caf1A usher possesses a Caf1 subunit-like domain that is crucial for Caf1 fibre secretion. Biochemical Journal, 418. pp. 541-551. ISSN 0264-6021 doi: 10.1042/bj20080992

Zhou, H. G., Standfuss, J., Watson, K. A. and Krasel, C. (2010) Structure of full-length arrestin2 in a dimeric crystal form. In: 51st Annual Meeting of the Deutsche-Gesellschaft-fur-Experimentelle-und-Klinische-Pharmakologie-und-Toxikologie, 23-25 Mar 2010, Mainz, Germany.

This list was generated on Fri Oct 31 01:48:03 2014 GMT.

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