Article

Barati, E., Moore, R. E. T., Ullah, I. ORCID: https://orcid.org/0000-0002-9367-6741, Kreissig, K., Coles, B. J., Dunwell, J. M. ORCID: https://orcid.org/0000-0003-2147-665X and Rehkämper, M. (2023) An investigation of zinc isotope fractionation in cacao (Theobroma cacao L.) and comparison of zinc and cadmium isotope compositions in hydroponic plant systems under high cadmium stress. Scientific Reports, 13. 4682. ISSN 2045-2322 doi: https://doi.org/10.1038/s41598-023-30899-z

Bell, L. ORCID: https://orcid.org/0000-0003-2895-2030 (2023) The future of farming? Food Science and Technology, 37 (2). pp. 16-19. ISSN 1476-2137 doi: https://doi.org/10.1002/fsat.3702_4.x

Bell, L. ORCID: https://orcid.org/0000-0003-2895-2030, Chadwick, M., Puranik, M. ORCID: https://orcid.org/0009-0007-6427-8414, Jasper, J., Tudor, R., Methven, L. and Wagstaff, C. ORCID: https://orcid.org/0000-0001-9400-8641 (2023) Genotypes Of Eruca vesicaria subsp. sativa grown in contrasting field environments differ on transcriptomic and metabolomic levels, significantly impacting nutritional quality. Frontiers in Plant Science, 14. 1218984. ISSN 1664-462X doi: https://doi.org/10.3389/fpls.2023.1218984

Broadmeadow, S., Nisbet, T., Palmer, R., Webb, L., Short, C., Chivers, C.-A., Hammond, J. ORCID: https://orcid.org/0000-0002-6241-3551, Lukac, M. ORCID: https://orcid.org/0000-0002-8535-6334, Miller, A., Gantlett, R. and Clark, J. ORCID: https://orcid.org/0000-0002-0412-8824 (2023) Incorporating technical and farmer knowledge to improve land use and management for natural flood management in lowland catchments. Land Use Policy, 128. 106596. ISSN 02648377 doi: https://doi.org/10.1016/j.landusepol.2023.106596

Christiansen, D. M. ORCID: https://orcid.org/0000-0002-7020-5082, Strydom, T. ORCID: https://orcid.org/0000-0001-6067-1349, Greiser, C. ORCID: https://orcid.org/0000-0003-4023-4402, McClory, R. ORCID: https://orcid.org/0000-0003-4963-1180, Ehrlén, J. ORCID: https://orcid.org/0000-0001-8539-8967 and Hylander, K. ORCID: https://orcid.org/0000-0002-1215-2648 (2023) Effects of past and present microclimates on northern and southern plant species in a managed forest landscape. Journal of Vegetation Science, 34 (4). e13197. ISSN 1654-1103 doi: https://doi.org/10.1111/jvs.13197

Duan, X., Jin, K., Mao, Z., Liu, L., He, Y., Xia, S., Hammond, J. P. ORCID: https://orcid.org/0000-0002-6241-3551, White, P. J., Xu, F. and Shi, L. (2023) Compacted soil adaptability of Brassica napus driven by root mechanical traits. Soil and Tillage Research, 233. 105785. ISSN 1879-3444 doi: https://doi.org/10.1016/j.still.2023.105785

Emmanuel, C. J., Schoonbeck, H.-J. and Shaw, M. W. (2023) Microscope studies of symptomless growth of Botrytis cinerea in Lactuca sativa and Arabidopsis thaliana. Plant Pathology, 72 (3). pp. 564-581. ISSN 0032-0862 doi: https://doi.org/10.1111/ppa.13683

Gush, M. B., Blanuša, T., Chalmin-Pui, L. S., Griffiths, A., Larsen, E. K., Prasad, R., Redmile-Gordon, M. and Sutcliffe, C. (2023) Environmental horticulture for domestic and community gardens – an integrated and applied research approach. Plants, People, Planet. ISSN 2572-2611 doi: https://doi.org/10.1002/ppp3.10444

Harkness, C., Areal, F. J., Semenov, M. A., Senapati, N., Shield, I. F. and Bishop, J. ORCID: https://orcid.org/0000-0003-2114-230X (2023) Towards stability of food production and farm income in a variable climate. Ecological Economics, 204 (Part A). 107676. ISSN 0921-8009 doi: https://doi.org/10.1016/j.ecolecon.2022.107676

Howard, N. P., Micheletti, D., Luby, J. J., Durel, C.-E., Denancé, C., Muranty, H., Ordidge, M. ORCID: https://orcid.org/0000-0003-0115-5218 and Albach, D. C. (2023) Pedigree reconstruction for triploid apple cultivars using single nucleotide polymorphism array data. Plants People Planet, 5 (1). pp. 98-111. ISSN 2572-2611 doi: https://doi.org/10.1002/ppp3.10313

Huang, W., Li, M., Zhang, H., Wu, J., Dunwell, J. M. ORCID: https://orcid.org/0000-0003-2147-665X and Zhang, S. (2023) Differentially expression analyses in fruit of cultivated and wild species of grape and peach. Scientific Reports, 13 (1). 1997. ISSN 2045-2322 doi: https://doi.org/10.1038/s41598-023-29025-w

Jackson, P. P. J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, van Harsselaar, J., Theis, S. and Rastall, R. A. (2023) Oligofructose, 2'fucosyllactose and β-glucan in combination induce specific changes in microbial composition and short-chain fatty acid production compared to sole supplementation. Journal of Applied Microbiology, 134 (2). lxac069. ISSN 1364-5072 doi: https://doi.org/10.1093/jambio/lxac069

Jayakodi, M. ORCID: https://orcid.org/0000-0003-2951-0541, Golicz, A. A. ORCID: https://orcid.org/0000-0002-9711-4826, Kreplak, J., Fechete, L. I. ORCID: https://orcid.org/0000-0002-8502-9210, Angra, D. ORCID: https://orcid.org/0000-0002-6681-0597, Bednář, P. ORCID: https://orcid.org/0000-0001-7070-6015, Bornhofen, E. ORCID: https://orcid.org/0000-0002-7447-6226, Zhang, H. ORCID: https://orcid.org/0000-0001-8757-9905, Boussageon, R. ORCID: https://orcid.org/0000-0002-5858-8105, Kaur, S. ORCID: https://orcid.org/0000-0003-3972-7058, Cheung, K. ORCID: https://orcid.org/0000-0002-3418-3840, Čížková, J. ORCID: https://orcid.org/0000-0001-7787-1849, Gundlach, H. ORCID: https://orcid.org/0000-0002-6757-0943, Hallab, A., Imbert, B. ORCID: https://orcid.org/0000-0002-8229-8693, Keeble-Gagnère, G., Koblížková, A., Kobrlová, L. ORCID: https://orcid.org/0000-0001-9024-7717, Krejčí, P. ORCID: https://orcid.org/0000-0002-4653-1195, Mouritzen, T. W. ORCID: https://orcid.org/0000-0003-0558-1425, Neumann, P. ORCID: https://orcid.org/0000-0001-6711-6639, Nadzieja, M. ORCID: https://orcid.org/0000-0002-6643-8019, Nielsen, L. K. ORCID: https://orcid.org/0000-0003-3215-9481, Novák, P. ORCID: https://orcid.org/0000-0002-5068-9681, Orabi, J., Padmarasu, S. ORCID: https://orcid.org/0000-0003-3125-3695, Robertson-Shersby-Harvie, T., Robledillo, L. Á., Schiemann, A., Tanskanen, J., Törönen, P., Warsame, A. O. ORCID: https://orcid.org/0000-0002-9281-0443, Wittenberg, A. H. J. ORCID: https://orcid.org/0000-0002-0482-2592, Himmelbach, A., Aubert, G. ORCID: https://orcid.org/0000-0002-1867-5730, Courty, P.-E., Doležel, J. ORCID: https://orcid.org/0000-0002-6263-0492, Holm, L. U. ORCID: https://orcid.org/0000-0002-7807-2966, Janss, L. L. ORCID: https://orcid.org/0000-0001-9804-1529, Khazaei, H. ORCID: https://orcid.org/0000-0002-5202-8764, Macas, J. ORCID: https://orcid.org/0000-0003-0829-1570, Mascher, M. ORCID: https://orcid.org/0000-0001-6373-6013, Smýkal, P. ORCID: https://orcid.org/0000-0002-6117-8510, Snowdon, R. J. ORCID: https://orcid.org/0000-0001-5577-7616, Stein, N. ORCID: https://orcid.org/0000-0003-3011-8731, Stoddard, F. L. ORCID: https://orcid.org/0000-0002-8097-5750, Stougaard, J., Tayeh, N., Torres, A. M. ORCID: https://orcid.org/0000-0002-2907-4287, Usadel, B. ORCID: https://orcid.org/0000-0003-0921-8041, Schubert, I., O'Sullivan, D. M. ORCID: https://orcid.org/0000-0003-4889-056X, Schulman, A. H. ORCID: https://orcid.org/0000-0002-4126-6177 and Andersen, S. U. ORCID: https://orcid.org/0000-0002-1096-1468 (2023) The giant diploid faba genome unlocks variation in a global protein crop. Nature, 615 (7953). pp. 652-659. ISSN 1476-4687 doi: https://doi.org/10.1038/s41586-023-05791-5

Karisto, P. ORCID: https://orcid.org/0000-0003-4807-0190, Suffert, F. ORCID: https://orcid.org/0000-0001-6969-3878 and Mikaberidze, A. ORCID: https://orcid.org/0000-0003-2278-2288 (2023) Spatially explicit ecological modeling improves empirical characterization of plant pathogen dispersal. Plant-Environment Interactions, 4 (2). pp. 86-96. ISSN 2575-6265 doi: https://doi.org/10.1002/pei3.10104

Li, Y., Yang, X., Li, X., Wang, C., Ding, G., Xu, F., Wang, S., Cai, H., Hammond, J. P. ORCID: https://orcid.org/0000-0002-6241-3551, Shabala, S., Yu, M. and Shi, L. ORCID: https://orcid.org/0000-0002-5312-8521 (2023) Jasmonic acid participating in the systemic regulation of phosphate starvation response in Brassica napus. Plant and Soil. ISSN 0032-079X doi: https://doi.org/10.1007/s11104-023-06355-2

Liu, H., Pan, Y., Cui, R., Hammond, J. P. ORCID: https://orcid.org/0000-0002-6241-3551, White, P. J., Zhang, Y., Zou, M., Ding, G., Wang, S., Cai, H., Xu, F. and Shi, L. ORCID: https://orcid.org/0000-0002-5312-8521 (2023) Integrating genome-wide association studies with selective sweep reveals genetic loci associated with tolerance to low phosphate availability in Brassica napus. Molecular Breeding, 43 (7). 53. ISSN 1380-3743 doi: https://doi.org/10.1007/s11032-023-01399-9

Lovegrove, J. A. ORCID: https://orcid.org/0000-0001-7633-9455, O'Sullivan, D. M. ORCID: https://orcid.org/0000-0003-4889-056X, Tosi, P. ORCID: https://orcid.org/0000-0003-4171-6120, Millan, E. ORCID: https://orcid.org/0000-0002-2421-2855, Todman, L. C. ORCID: https://orcid.org/0000-0003-1232-294X, Bishop, J. ORCID: https://orcid.org/0000-0003-2114-230X, Chatzifragkou, A. ORCID: https://orcid.org/0000-0002-9255-7871, Clegg, M. E., Hammond, J. ORCID: https://orcid.org/0000-0002-6241-3551, Jackson, K. G. ORCID: https://orcid.org/0000-0002-0070-3203, Jones, P. J. ORCID: https://orcid.org/0000-0003-3464-5424, Lignou, S. ORCID: https://orcid.org/0000-0001-6971-2258, Macready, A. L. ORCID: https://orcid.org/0000-0003-0368-9336, McMeel, Y., Parker, J. ORCID: https://orcid.org/0000-0003-4121-5481, Rodriguez-Garcia, J. ORCID: https://orcid.org/0000-0002-4986-3144, Sharp, P., Shaw, L. J., Smith, L. G. ORCID: https://orcid.org/0000-0002-9898-9288 and Tebbit, M. (2023) 'Raising the pulse': the environmental, nutritional and health benefits of pulse-enhanced foods. Nutrition Bulletin, 48 (1). pp. 134-143. ISSN 1471-9827 doi: https://doi.org/10.1111/nbu.12601

Mahmood, S. A., Karampoiki, M., Hammond, J. P. ORCID: https://orcid.org/0000-0002-6241-3551, Paraforos, D. S., Murdoch, A. J. and Todman, L. ORCID: https://orcid.org/0000-0003-1232-294X (2023) Embedding expert opinion in a Bayesian network model to predict wheat yield from spring-summer weather. Smart Agricultural Technology, 4. 100224. ISSN 2772-3755 doi: https://doi.org/10.1016/j.atech.2023.100224

Mateus-Rodríguez, J. F., Lahive, F., Hadley, P. and Daymond, A. J. ORCID: https://orcid.org/0000-0002-7597-9423 (2023) Effects of simulated climate change conditions of increased temperature and [CO2] on the early growth and physiology of the tropical tree crop, Theobroma cacao L. Tree Physiology, 43 (12). pp. 2050-2063. ISSN 0829-318X doi: https://doi.org/10.1093/treephys/tpad116

Mian, G., Zuiderduin, K., Barnes, L. S., Loketsatian, S., Bell, L. ORCID: https://orcid.org/0000-0003-2895-2030, Ermacora, P. and Cipriani, G. (2023) In vitro application of Eruca vesicaria subsp. sativa leaf extracts and associated metabolites reduces the growth of Oomycota species involved in Kiwifruit Vine Decline Syndrome. Frontiers in Plant Science, 14 (1292290). ISSN 1664-462X doi: https://doi.org/10.3389/fpls.2023.1292290

Qin, N., Pétursdóttir, Á. H., Humphries, D. J., Desnica, N., Newton, E. E., Vanhatalo, A., Halmemies-Beauchet-Filleau, A., Bell, L. ORCID: https://orcid.org/0000-0003-2895-2030, Givens, D. I. ORCID: https://orcid.org/0000-0002-6754-6935, Juniper, D. T., Gunnlaugsdóttir, H. and Stergiadis, S. ORCID: https://orcid.org/0000-0002-7293-182X (2023) Mineral concentrations in milk from cows fed seaweed (Saccharina latissima) under different basal protein supplementation. Food Chemistry, 403. 134315. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2022.134315

Rees, M., McAleer, P., Larsen, E.K., Gush, M. and Blanusa, T. (2023) Mitigation of winter rainfall by hedges – does plant choice matter? Acta Horticulturae, 1374. pp. 149-154. ISSN 2406-6168 doi: https://doi.org/10.17660/ActaHortic.2023.1374.19

Rose, T. ORCID: https://orcid.org/0000-0003-2400-1932, Lowe, C. ORCID: https://orcid.org/0000-0003-4674-7161, Miret Barrio, J. A. ORCID: https://orcid.org/0000-0001-8897-1212, Walpole, H. ORCID: https://orcid.org/0009-0003-4564-554X, Halsey, K. ORCID: https://orcid.org/0000-0002-1701-0198, Venter, E. ORCID: https://orcid.org/0000-0002-8101-2403, Urban, M. O. ORCID: https://orcid.org/0000-0002-3684-856X, Buendia, H. F., Kurup, S. ORCID: https://orcid.org/0000-0003-1035-7065, O’Sullivan, D. M. ORCID: https://orcid.org/0000-0003-4889-056X, Beebe, S. and Heuer, S. ORCID: https://orcid.org/0000-0001-8273-4515 (2023) High temperature tolerance in a novel, high-quality phaseolus vulgaris breeding line is due to maintenance of pollen viability and successful germination on the stigma. Plants, 12 (13). 2491. ISSN 2223-7747 doi: https://doi.org/10.3390/plants12132491

Salisbury, A., Blanusa, T., Bostock, H. and Perry, J. N. (2023) Careful plant choice can deliver more biodiverse vertical greening (green façades). Urban Forestry and Urban Greening, 89. 128118. ISSN 1618-8667 doi: https://doi.org/10.1016/j.ufug.2023.128118

Skovbjerg, C. K. ORCID: https://orcid.org/0000-0001-9780-2920, Angra, D. ORCID: https://orcid.org/0000-0002-6681-0597, Robertson-Shersby-Harvie, T., Kreplak, J., Keeble-Gagnère, G., Kaur, S., Ecke, W., Windhorst, A., Nielsen, L. K., Schiemann, A., Knudsen, J., Gutierrez, N., Tagkouli, V., Fechete, L. I., Janss, L., Stougaard, J., Warsame, A., Alves, S., Khazaei, H., Link, W., Torres, A. M., O'Sullivan, D. M. ORCID: https://orcid.org/0000-0003-4889-056X and Andersen, S. U. ORCID: https://orcid.org/0000-0002-1096-1468 (2023) Genetic analysis of global faba bean diversity, agronomic traits and selection signatures. Theoretical and Applied Genetics, 136 (5). 114. ISSN 1432-2242 doi: https://doi.org/10.1007/s00122-023-04360-8

Ullah, I. ORCID: https://orcid.org/0000-0002-9367-6741 and Dunwell, J. M. ORCID: https://orcid.org/0000-0003-2147-665X (2023) Bioinformatic, genetic and molecular analysis of several badnavirus sequences integrated in the genomes of diverse cocoa (Theobroma cacao L.) germplasm. Saudi Journal of Biological Sciences, 30 (5). 103648. ISSN 1319-562X doi: https://doi.org/10.1016/j.sjbs.2023.103648

Ullah, I. ORCID: https://orcid.org/0000-0002-9367-6741, Kamran, M. and Dunwell, J. M. ORCID: https://orcid.org/0000-0003-2147-665X (2023) Identification of a novel polerovirus in cocoa (Theobroma cacao) germplasm and development of molecular methods for use in diagnostics. Pathogens, 12 (11). 1284. ISSN 2076-0817 doi: https://doi.org/10.3390/pathogens12111284

Wickramasuriya, A. M., Hewavithana, T. M., de Silva, K. K., Ullah, I. ORCID: https://orcid.org/0000-0002-9367-6741 and Dunwell, J. M. ORCID: https://orcid.org/0000-0003-2147-665X (2023) Comprehensive transcriptome analysis of arabidopsis thaliana DNA polymerase epsilon catalytic subunit A and B mutants. Tropical Plant Biology, 16 (1-2). pp. 12-31. ISSN 1935-9756 doi: https://doi.org/10.1007/s12042-023-09327-z

Wu, T., Wang, C., Han, B., Liu, Z., Yang, X., Wang, W., Ding, G., Hammond, J. P. ORCID: https://orcid.org/0000-0002-6241-3551, White, P. J., Xu, F. and Shi, L. ORCID: https://orcid.org/0000-0002-5312-8521 (2023) Emerging roles of inositol pyrophosphates in signaling plant phosphorus status and phytohormone signaling. Plant and Soil. ISSN 0032-079X doi: https://doi.org/10.1007/s11104-023-05976-x

Yazdani-Biouki, R., Karimi, M. and Soltangheisi, A. ORCID: https://orcid.org/0000-0002-6766-5379 (2023) Purslane (Portulaca oleracea L.) salt tolerance assessment. Soil Science and Plant Nutrition, 69 (4). pp. 250-259. ISSN 1747-0765 doi: https://doi.org/10.1080/00380768.2023.2212696

Zhang, B., Wang, Y., Liu, H., Wang, J., Din, I., Hammond, J. P. ORCID: https://orcid.org/0000-0002-6241-3551, Ding, G., Wang, S., Cai, H., Wang, C., White, P. J., Xu, F. and Shi, L. ORCID: https://orcid.org/0000-0002-5312-8521 (2023) Effect of cultivars and nature–based solutions for the reduction of phosphate fertilizer usage on oilseed rape. Field Crops Research, 293. 108851. ISSN 0378-4290 doi: https://doi.org/10.1016/j.fcr.2023.108851

Book or Report Section

Karampoiki, M., Todman, L. ORCID: https://orcid.org/0000-0003-1232-294X, Mahmood, S., Murdoch, A. J., Hammond, J. ORCID: https://orcid.org/0000-0002-6241-3551, Ranieri, E., Griepentrog, H.W. and Paraforos, D.S. (2023) A Bayesian network approach for grain protein content prediction of winter wheat. In: Stafford, J. V. (ed.) Precision agriculture '23. Wageningen Academic Publishers, pp. 429-434. ISBN 9789086863938 doi: https://doi.org/10.3920/978-90-8686-947-3_53

Pavlenko, T., Argyropoulos, D., Arnoult, M., Engel, T., Gadanakis, Y. ORCID: https://orcid.org/0000-0001-7441-970X, Griepentrog, H.W., Kambuta, J., Latherow, T., Murdoch, A., Tranter, R. ORCID: https://orcid.org/0000-0003-0702-6505 and Paraforos, D.S. (2023) 100. Development of a precision agriculture downloadable content for the farming simulator game. In: Stafford, J. V. (ed.) Precision agriculture '23. Wageningen Academic Publishers, pp. 797-804. ISBN 9789086863938 doi: https://doi.org/10.3920/978-90-8686-947-3_100

Conference or Workshop Item

Daymond, A. ORCID: https://orcid.org/0000-0002-7597-9423, End, M., Poole, S., Turnbull, C. ORCID: https://orcid.org/0009-0007-6470-6933, Ullah, I. ORCID: https://orcid.org/0000-0002-9367-6741, Williams, A. and Hadley, P. (2023) Procedures for safe movement of cocoa germplasm. In: International Symposium on Cocoa Research, 5-7 Dec 2023, Montpeller.

Daymond, A. ORCID: https://orcid.org/0000-0002-7597-9423, Lahive, F., Mateus Rodriguez, J. and Hadley, P. (2023) A physiological model to quantify impacts of climate change variables on cocoa productivity. In: International Symposium on Cocoa Research, 5-7 Dec 2022, Mont.

Mateus Rodriguez, J., Daymond, A. ORCID: https://orcid.org/0000-0002-7597-9423, Lahive, F. and Hadley, P. (2023) Combined effects of elevated [CO2] and increased temperatures on cacao reproductive development. In: International Symposium on Cocoa Research, 5-7 Dec 2022, Montpeller.

Book

Bell, L. ORCID: https://orcid.org/0000-0003-2895-2030, Oruna-Concha, M. J. ORCID: https://orcid.org/0000-0001-7916-1592 and De Haro-Bailon, A., eds. (2023) Nutritional quality and nutraceutical properties of Brassicaceae (Cruciferae). Frontiers in Nutrition. Frontiers. doi: https://doi.org/10.3389/fnut.2023.1292964 (Research Topic. ISSN 2296-861X)

Zhang, Y.-M., Jia, Z. and Dunwell, J. M. ORCID: https://orcid.org/0000-0003-2147-665X, eds. (2023) The applications of new multi-locus GWAS methodologies in the genetic dissection of complex traits, volume II. Frontiers in Plant Science, 14. Frontiers. doi: https://doi.org/10.3389/fpls.2023.1340767 (ISSN: 1664-462X)

Thesis

Richard, R. (2023) Investigation of the stability of six breadmaking QTL and linkage mapping of GPD and senescence metrics in bread wheat. PhD thesis, University of Reading. doi: https://doi.org/10.48683/1926.00113932