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Items where Division is "Faculty of Life Sciences > School of Chemistry, Food and Pharmacy > Department of Food and Nutritional Sciences > Food Microbial Sciences Research Group"

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Number of items at this level: 589.

2014

Anjum, M.F., Jones, E., Morrison, V., Tozzoli, R., Morabito, S., Toth, I., Nagy, B., Smith, G., Aspan, A., Nielsen, E. M., Fach, P., Echeita, A., Woodward, M. and La Ragione, R. M. (2014) Use of virulence determinants and seropathotypes to distinguish high- and low-risk Escherichia coli O157 and non-O157 isolates from Europe. Epidemiology and Infection, 142 (5). pp. 1019-1028. ISSN 1469-4409 doi: 10.1017/S0950268813001635

Bodinham, C. L., Smith, L., Thomas, E. L., Bell, J. D., Swann, J. R., Costabile, A., Russell-Jones, D., Umpleby, A. M. and Robertson, M. D. (2014) Efficacy of increased resistant starch consumption in human type 2 diabetes. Endocrine connections, 3 (2). pp. 75-84. ISSN 2049-3614 doi: 10.1530/EC-14-0036

Bruck, W. M., Gibson, G. R. and Bruck , T. B. (2014) The effect of proteolysis on the induction of cell death by monomeric alpha-lactalbumin. Biochimie, 97. pp. 138-143. ISSN 0300-9084 doi: 10.1016/j.biochi.2013.10.007

Chapman, C. M. C., Gibson, G. R. and Rowland, I. (2014) Effects of single- and multi-strain probiotics on biofilm formation and in vitro adhesion to bladder cells by urinary tract pathogens. Anaerobe. ISSN 1075-9964 doi: 10.1016/j.anaerobe.2014.02.001

Daud, N. M., Ismail, N. A., Thomas, E. L., Fitzpatrick, J. A., Bell, J. D., Swann, J. R., Costabile, A., Childs, C. E., Pedersen, C., Goldstone, A. P. and Frost, G. S. (2014) The impact of oligofructose on stimulation of gut hormones, appetite regulation, and adiposity. Obesity. ISSN 1930-739X doi: 10.1002/oby.20754

Freire-Martín, I., AbuOun, M., Reichel, R., La Ragione, R. M. and Woodward, M. J. (2014) Sequence analysis of a CTX-M-1 IncI1 plasmid found in Salmonella enterica 4,5,12,i:-, Escherichia coli and Klebsiella pneumoniae on a single UK pig farm. Journal of Antimicrobial Chemotherapy. ISSN 0305-7453 doi: 10.1093/jac/dku098

Frost, G., Sleeth, M. L., Sahuri-Arisoylu, M., Lizarbe, B., Cerdan, S., Brody, L., Anastasovska, J., Ghourab, S., Hankir, M., Zhang, S., Carling, D., Swann, J. R., Gibson, G., Viardot, A., Morrison, D., Thomas, E. L. and Bell, J. D. (2014) The short-chain fatty acid acetate reduces appetite via a central homeostatic mechanism. Nature Communications, 5 (3611). ISSN 2041-1723 doi: 10.1038/ncomms4611

Gan, X. T., Ettinger, G., Huang, C. X., Burton, J. P., Haist, J. V., Rajapurohitam, V., Sidaway, J. E., Martin, G., Gloor, G. B., Swann, J. R., Reid, G. and Karmazyn, M. (2014) Probiotic administration attenuates myocardial hypertrophy and heart failure following myocardial infarction in the rat. Circulation : heart failure . ISSN 1941-3289 doi: 10.1161/​CIRCHEARTFAILURE.113.000978

Hartman, H. B., Fell, D. A., Rossell, S., Jensen, P. R., Woodward, M. J., Thorndahl, L., Jelsbak, L., Olsen, J. E., Raghunathan, A., Daefler, S. and Poolman, M. G. (2014) Identification of potential drug targets in Salmonella Typhimurium using metabolic modelling and experimental validation. Microbiology, 160 (6). pp. 1252-1266. ISSN 1350-0872 doi: 10.1099/mic.0.076091-0

Khalil, N., Walton, G. E., Gibson, G. R., Tuohy, K. M. and Andrews, S. C. (2014) In vitro batch cultures of gut microbiota from healthy and ulcerative colitis (UC) subjects suggest that sulphate-reducing bacteria levels are raised in UC and by a protein-rich diet. International Journal of Food Science and Nutrition, 65 (1). pp. 79-88. ISSN 1465-3478 doi: 10.3109/09637486.2013.825700

Kok, M. G.M., Swann, J. R., Wilson, I. D., Somsen, G. W. and de Jong, G. J. (2014) Hydrophilic interaction chromatography–mass spectrometry for anionic metabolic profiling of urine from antibiotic-treated rats. Journal of Pharmaceutical and Biomedical Analysis, 92. pp. 98-104. ISSN 0731-7085 doi: 10.1016/j.jpba.2014.01.008

Mappley, L. J., La Ragione, R. M. and Woodward, M. J. (2014) Brachyspira and its role in avian intestinal spirochaetosis. Veterinary Microbiology, 168 (3-4). pp. 245-260. ISSN 0378-1135 doi: 10.1016/j.vetmic.2013.11.019

McNeece, G., Naughton, V., Woodward, M. J., Dooley, J. S. G. and Naughton, P. J. (2014) Array based detection of antibiotic resistance genes in Gram negative bacteria isolated from retail poultry meat in the UK and Ireland. International Journal of Food Microbiology, 179. pp. 24-32. ISSN 0168-1605 doi: 10.1016/j.ijfoodmicro.2014.03.019

Swann, J. R., Reid, G., Nduti, N., Sybesma, W., Kort, R., Kollmann, T. R., Adam, R., Boga, H., Brown, E. M., Einerhand, A., El-Nezami, H., Gloor, G. B., Kavere, I. I., Lindahl, J., Manges, A., Mamo, W., Martin, R., McMillan, A., Obiero, J., Ochieng, P. A., Onyango, A., Rulisa, S., Salminen, E., Salminen, S., Sije, A., van Treuren, W., Waweru, D. and Kemp, S. J. (2014) Harnessing microbiome and probiotic research in sub-Saharan Africa: recommendations from an African workshop. Microbiome, 2 (12). pp. 1-13. ISSN 2049-2618 doi: 10.1186/2049-2618-2-12

Tang, Y., Gielbert, A., Underwood, A., Woodward, M. J. and Petrovska, L. (2014) Metaproteomics analysis reveals the adaptation process for the chicken gut microbiota. Applied and Environmental Microbiology, 80 (2). pp. 478-485. ISSN 0099-2240 doi: 10.1128/AEM.02472-13

2013

Boulange, C. L., Claus, S. P., Chou, C. J., Collino, S., Montoliu, I., Kochhar, S., Holmes, E., Rezzi, S., Nicholson, J. K., Dumas, M. E. and Martin, F.-P. J. (2013) Early metabolic adaptation in C57BL/6 mice resistant to high fat diet induced weight gain involves an activation of mitochondrial oxidative pathways. Journal of Proteome Research, 12 (4). pp. 1956-1968. ISSN 1535-3907 doi: 10.1021/pr400051s

Chapman, C.M.C., Gibson, G.R., Todd, S. and Rowland, I. (2013) Comparative in vitro inhibition of urinary tract pathogens by single- and multi-strain probiotics. European Journal of Nutrition. ISSN 1436-6215 doi: 10.1007/s00394-013-0501-2

Claus, S. P. (2013) Fighting undernutrition: don't forget the bugs. Cell Host and Microbe, 13 (3). pp. 239-240. ISSN 1931-3128 doi: 10.1016/j.chom.2013.02.015

Claus, S. P. and Swann, J. R. (2013) Nutrimetabonomics: applications for nutritional sciences, with specific reference to gut microbial interactions. Annual Review of Food Science and Technology, 4. pp. 381-399. ISSN 1941-1413 doi: 10.1146/annurev-food-030212-182612

Connolly, J., Valdramidis, V. P., Byrne, E., Karatzas, K.-A., Cullen, P. J., Keener, K. M. and Mosnier, J. P. (2013) Characterization and antimicrobial efficacy against E. coli of a helium/air plasma at atmospheric pressure created in a plastic package. Journal of Physics D: Applied Physics, 46 (3). 035401. ISSN 1361-6463 doi: 10.1088/0022-3727/46/3/035401

Cueva , C., Sánchez-Patán, F., Monagas , M., Walton, G. E., Gibson, G. R., Martín-Álvarez , P. J., Bartolomé, B. and Moreno-Arribas , M. V. (2013) In vitro fermentation of grape seed flavan-3-ol fractions by human faecal microbiota: changes in microbial groups and phenolic metabolites. FEMS Microbiology Ecology, 83 (3). pp. 792-805. ISSN 1574-6941 doi: 10.1111/1574-6941.12037

De Castro, N. M., Yaqoob, P., De la Fuente, M., Baeza, I. and Claus, S. P. (2013) Premature impairment of methylation pathway and cardiac metabolic dysfunction in fa/fa obese Zucker rats. Journal of Proteome Research. ISSN 1535-3907 doi: 10.1021/pr400025y

Dewulf, E. M., Cani, P. D., Claus, S. P., Fuentes, S., Puylaert, P. G. B., Neyrinck, A. M., Bindels, L. B., de Vos, W. M., Gibson, G. R., Thissen, J.-P. and Delzenne, N. M. (2013) Insight into the prebiotic concept: lessons from an exploratory, double blind intervention study with inulin-type fructans in obese women. Gut, 32 (8). pp. 1112-1121. ISSN 1468-3288 doi: 10.1136/gutjnl-2012-303304

El Aidy, S., Derrien, M., Merrifield, C. A., Levenez, F., Dore, J., Boekschoten, M. V., Dekker, J., Holmes, E., Zoetendal, E. G., van Baarlen, P., Claus, S. P. and Kleerbezem, M. (2013) Gut bacteria-host metabolic interplay during conventionalisation of the mouse germfree colon. ISME Journal, 7. pp. 743-755. ISSN 1751-7370 doi: 10.1038/ismej.2012.142

El Aidy, S., Merrifield, C. A., Derrien, M., van Baarlen, P., Hooiveld, G., Levenez, F., Doré, J., Dekker, J., Holmes, E., Claus, S. P., Reijngoud, D. J. and Kleerebezem, M. (2013) The gut microbiota elicits a profound metabolic reorientation in the mouse jejunal mucosa during conventionalisation. Gut, 62 (9). pp. 1306-1314. ISSN 1468-3288 doi: 10.1136/gutjnl-2011-301955

Feehily, C., O'Byrne, C.P. and Karatzas, K. A. G. (2013) Functional γ-aminobutyrate shunt in Listeria monocytogenes: role in acid tolerance and succinate biosynthesis. Applied and Environmental Microbiology, 79 (1). pp. 74-80. ISSN 0099-2240 doi: 10.1128/AEM.02184-12

Guerra-Ordaz, A. A., Molist, F., Hermes, R. G., Gómez de Segura, A., La Ragione, R. M., Woodward, M. J., Tchorzewska, M. A., Collins, J. W., Pérez, J. F. and Martin-Orúe, S. M. (2013) Effect of inclusion of lactulose and Lactobacillus plantarum on the intestinal environment and performance of piglets at weaning. Animal Feed Science and Technology, 185 (3-4). pp. 160-168. ISSN 0377-8401 doi: 10.1016/j.anifeedsci.2013.07.009

Hayward, M. R., Jansen, V. A. A. and Woodward, M. J. (2013) Comparative genomics of Salmonella enterica serovars Derby and Mbandaka, two prevalent serovars associated with different livestock species in the UK. BMC Genomics, 14 (1). p. 365. ISSN 1471-2164 doi: 10.1186/1471-2164-14-365

Hobden, M. R., Martin-Morales, A., Guerin-Deremaux, L., Wils, D., Costabile, A., Walton, G. E., Rowland, I., Kennedy, O. B. and Gibson, G. R. (2013) In Vitro Fermentation of NUTRIOSE® FB06, a wheat dextrin soluble fibre, in a continuous culture human colonic model system. PLoS ONE, 8 (10). e77128. doi: 10.1371/journal.pone.0077128

Hoyles, L. , Clear, J. A. and McCartney, A. L. (2013) Use of denaturing gradient gel electrophoresis to detect Actinobacteria associated with the human faecal microbiota. Anaerobe. ISSN 1075-9964 doi: 10.1016/j.anaerobe.2013.06.001

Hoyles, L., Ortman, K., Cardew, S., Foster, G., Rogerson, F. and Falsen, E. (2013) Corynebacterium uterequi sp. nov., a non-lipophilic bacterium isolated from urogenital samples from horses. Veterinary Microbiology. ISSN 0378-1135 doi: 10.1016/j.vetmic.2013.03.025 (In Press)

Inness, V.L., Khoo, C., Gross, K.L., Hoyles, L., Gibson, G. and McCartney, A. (2013) An assessment of the prebiotic potential of single and blended substrates in anaerobic in vitro batch culture fermentations using canine faecal samples as inocula. International Journal of Probiotics and Prebiotics. ISSN 1555-1431 (In Press)

Kok, M. G. M., Ruijken, M. A., Swann, J. R., Wilson, I. D., Somsen, G. W. and de Jong, G. J. (2013) Anionic metabolic profiling of urine from antibiotic-treated rats by capillary electrophoresis–mass spectrometry. Analytical and Bioanalytical Chemistry, 405 (8). pp. 2585-2594. ISSN 1618-2650 doi: 10.1007/s00216-012-6701-4

La Ragione, R. M., Woodward, M. J., Kumar, M., Rodenberg, J., Fan, H., Wales, A. D. and Karaca, K. (2013) Efficacy of a live attenuated Escherichia coli O78:K80 vaccine in chickens and turkeys. Avian Diseases, 57 (2). pp. 273-279. ISSN 0005-2086 doi: 10.1637/10326-081512-Reg.1

Lees, H. J., Swann, J. R., Wilson, I. D., Nicholson, J. K. and Holmes, E. (2013) Hippurate: the natural history of a mammalian-microbial co-metabolite. Journal of Proteome Research, 12 (4). pp. 1527-1546. ISSN 1535-3907 doi: 10.1021/pr300900b (In Press)

Lewis, M. (2013) A pig’s microbiota – a result of many factors. Pig Progress, 29 (8). pp. 24-26.

Lewis, M. C., Patel, D. V., Fowler, J., Duncker, S., Zuercher, A. W., Mercenier, A. and Bailey, M. (2013) Dietary supplementation with Bifidobacterium lactis NCC2818 from weaning reduces local immunoglobulin production in lymphoid-associated tissues but increases systemic antibodies in healthy neonates. British Journal of Nutrition, 110 (7). pp. 1243-1252. ISSN 1475-2662 doi: 10.1017/S0007114513000251

Likotraftiti, E., Tuohy, K. M., Gibson, G. R. and Rastall , R. A. (2013) Development of antimicrobial synbiotics using potentially-probiotic faecal isolates of Lactobacillus fermentum and Bifidobacterium longum. Anaerobe, 20. pp. 5-13. ISSN 1075-9964

Lopez-Andres , P., Luciano, G., Vasta, V., Gibson, T. M., Biondi, L., Priolo, A. and Mueller-Harvey, I. (2013) Dietary quebracho tannins are not absorbed, but increase the antioxidant capacity of liver and plasma in sheep. British Journal of Nutrition, 110 (4). pp. 632-639. ISSN 1475-2662 doi: 10.1017/S0007114512005703

Mappley, L. J., Tchórzewska, M. A., Nunez, A., Woodward, M. and La Ragione , R. M. (2013) Evidence for systemic spread of the potentially zoonotic intestinal spirochaete Brachyspira pilosicoli in experimentally challenged laying chickens. Journal of Medical Microbiology, 62 (2). pp. 297-302. ISSN 0022-2615 doi: 10.1099/jmm.0.052126-0

Mappley, L. J., Tchórzewska, M. A., Nunez, A., Woodward, M. J., Bramley, P. M. and La Ragione, R. M. (2013) Oral treatment of chickens with Lactobacillus reuteri LM1 reduces Brachyspira pilosicoli-induced pathology. Journal of Medical Microbiology, 62 (2). pp. 287-296. ISSN 0022-2615 doi: 10.1099/jmm.0.051862-0

Merrifield, C. A., Lewis, M. C., Claus, S. P., Pearce, J. T. M., Cloarec, O., Duncker, S., Heinzmann, S. S., Dumas, M.-E., Kochar, S., Rezzi, S., Mercenier, A., Nicholson, J. K., Bailey, M. and Holmes, E. (2013) Weaning diet induces sustained metabolic phenotype shift in the pig and influences host response to Bifidobacterium lactis NCC2818. Gut, 62 (6). pp. 842-851. ISSN 1468-3288 doi: 10.1136/gutjnl-2011-301656

Merrifield, C. A., Lewis, M. C., Claus, S., Pearce, J. T. M., Cloarec, O., Duncker, S., Heinzmann, S. S., Dumas, M., Kochhar, S., Rezzi, S., Mercenier, A., Nicholson, J. K., Bailey, M. and Holmes, E. (2013) Weaning diet induces sustained metabolic phenotype shift in the pig and influences host response to Bifidobacterium lactis NCC2818. Gut, 62 (6). pp. 842-851. ISSN 1468-3288 doi: 10.1136/gutjnl-2011-301656

Mills, C. E., Oruna-Concha, M. J., Mottram, D. S., Gibson, G. R. and Spencer, J. P. E. (2013) The effect of processing on chlorogenic acid content of commercially available coffee. Food Chemistry, 141 (4). pp. 3335-3340. ISSN 0308-8146 doi: 10.1016/j.foodchem.2013.06.014

Richards, S. E., Wang, Y., Claus, S. P., Lawler, D., Kochhar, S., Holmes, E. and Nicholson, J. K. (2013) Metabolic phenotype modulation by caloric restriction in a lifelong dog study. Journal of Proteome Research, 12 (7). pp. 3117-3127. ISSN 1535-3907 doi: 10.1021/pr301097k

Swann, J. R., Spagou, K., Lewis, M., Nicholson, J. K., Glei, D. A., Seeman, T. E., Coe, C. L., Goldman, N., Ryff, C. D., Weinstein, M. and Holmes, E. (2013) Microbial−mammalian cometabolites dominate the age-associated urinary metabolic phenotype in Taiwanese and American populations. Journal of Proteome Research, 12 (7). pp. 3166-3180. ISSN 1535-3907 doi: 10.1021/pr4000152

Tejero-Sarinena, S., Barlow, J., Costabile, A., Gibson, G. R. and Rowland, I. (2013) Antipathogenic activity of probiotics against Salmonella Typhimurium and Clostridium difficile in anaerobic batch culture systems: is it due to synergies in probiotic mixtures or the specificity of single strains? Anaerobe, 24. pp. 60-65. ISSN 1075-9964 doi: 10.1016/j.anaerobe.2013.09.011

Vulevic, J., Juric, A., Tzortzis, G. and Gibson, G. R. (2013) A mixture of trans-galactooligosaccharides reduces markers of metabolic syndrome and modulates the fecal microbiota and immune function of overweight adults. Journal of Nutrition, 143 (3). pp. 324-331. ISSN 1541-6100 doi: 10.3945/jn.112.166132

Wu, G., Day, M. J., Mafura, M. T., Nunez-Garcia, J., Fenner, J. J., Sharma, M., van Essen-Zandbergen, A. , Rodríguez, I., Dierikx, C., Kadlec, K., Schink, A.-K., Wain, J., Helmuth, R., Guerra, B., Schwarz, S., Threlfall, J., Woodward, M. J.,, Woodford, N., Coldham, N. and Mevius, D. (2013) Comparative Analysis of ESBL-Positive Escherichia coli isolates from Animals and Humans from the UK, the Netherlands and Germany. PLoS ONE, 8 (9). ISSN 1932-6203 doi: 10.1371/journal.pone.0075392

argiri, a., Zoumpopoulou, g., Karatzas, K.-A., Tsakalidou, e., Nychas, G.-J., Panagou, E. and Tassou, C. (2013) Selection of potential probiotic lactic acid bacteria from fermented olives by in vitro tests. Food Microbiology, 33 (2). pp. 282-291. ISSN 0740-0020

2012

Anastasovska, J., Arora, T., Sanchez Canon, G. J., Parkinson, J. R. C., Tuohy, K., Gibson, G. R., Nadkarni, N. A., So, P. W., Thomas , E. L., Hankir, M. K., Van Loo, J., Modi, N., Bell, J. D. and Frost, G. (2012) Fermentable carbohydrate alters hypothalamic neuronal activity and protects against the obesogenic environment. Obesity, 20. pp. 1016-1023. ISSN 1930-739X doi: 10.1038/oby.2012.6

Arora, T., Loo, R. L., Anastasovska, J., Gibson, G., Tuohy, K. M., Sharma, R. K., Swann, J., Deaville, E., Sleeth, M., Thomas, L., Holmes, E., Bell, J. and Frost, G. (2012) Differential effects of two fermentable carbohydrates on central appetite regulation and body composition. PLoS ONE, 7 (8). e43263. ISSN 1932-6203 doi: 10.1371/journal.pone.0043263

Arora, T., Loo, R. L., Anastasovska, J., Gibson, G. R., Tuohy, K. M., Sharma, R. K., Swann, J. R., Deaville, E. R., Sleeth, M. J., Thomas, E. L., Holmes , E., Bell, J. D. and Frost, G. (2012) Differential effects of two fermentable carbohydrates on central appetite regulation and body composition. PLoS ONE, 7 (e43263). ISSN 1932-6203 doi: 10.1371/journal.pone.0043263

Bailey, M., Christoforidou, Z. and Lewis, M. (2012) Evolution of immune systems: specificity and autoreactivity. Autoimmunity Reviews, 12 (6). pp. 643-647. ISSN 1568-9972 doi: 10.1016/j.autrev.2012.10.007

Bailey, M., Christoforidou, Z. and Lewis, M. C. (2012) The evolutionary basis for differences between the immune systems of man, mouse, pig and ruminants. Veterinary Immunology and Immunopathology, 152 (1-2). pp. 13-19. ISSN 0165-2427 doi: 10.1016/j.vetimm.2012.09.022

Bienestock, J., Gibson, G., Klaenhammer , T. R., Walker , W. A. and Neish , A. (2012) New insights into probiotic mechanisms: a harvest from functional and metagenomic studies. Gut Microbes. ISSN 1949-0984 (In Press)

Brownawell, A. M., Caers , W., Gibson, G., Kendall , C. W.C., Lewis, K. D., Ringel, Y. and Slavin, J. L. (2012) Prebiotics and the health benefits of fiber: current regulatory status, future research, and goals. Journal of Nutrition, 142 (5). pp. 962-974. ISSN 1541-6100 doi: 10.3945/jn.112.158147

Costabile, A., Fava, F., Roytio, H., Forssten, S. D., Olli, K., Klievink, J., Rowland, I. R., Ouwehand, A. C., Rastall, R. A., Gibson, G. R. and Walton, G. E. (2012) Impact of polydextrose on the faecal microbiota: a double-blind, crossover, placebo-controlled feeding study in healthy human subjects. British Journal of Nutrition, 108 (3). pp. 471-481. ISSN 1475-2662 doi: 10.1017/S0007114511005782

Cox, R., Su, T., Clough, H., Woodward, M. J. and Sherlock, C. (2012) Spatial and temporal patterns in antimicrobial resistance of Salmonella Typhimurium in cattle in England and Wales. Epidemiology and Infection, 140 (11). pp. 2062-2073. ISSN 1469-4409 doi: 10.1017/S0950268811002755

Cunningham, K., Claus, S. P., Lindon, J. C., Holmes, E., Everett, J. R., Nicholson, J. K. and Coen, M. (2012) Pharmacometabonomic characterization of xenobiotic and endogenous metabolic phenotypes that account for inter-individual variation in isoniazid-induced toxicological response. Journal of Proteome Research, 11 (9). pp. 4630-4642. ISSN 1535-3907 doi: 10.1021/pr300430u

Donovan, S. M., Schneeman, B., Gibson, G. R. and Sanders, M. E. (2012) Establishing and evaluating health claims for probiotics. Advances in Nutrition, 3 (5). pp. 723-725. ISSN 2156-5376 doi: 10.3945/an.112.002592

Feehily, C. and Karatzas, K. A. G. (2012) Role of glutamate metabolism in bacterial responses towards acid and other stresses. Journal of Applied Microbiology, 114 (1). pp. 11-24. ISSN 1364-5072 doi: 10.1111/j.1365-2672.2012.05434 (In Press)

Foster, G., Wragg, P., Koylass, M. S., Whatmore, A. M. and Hoyles, L. (2012) Isolation of Actinomyces hyovaginalis from sheep and comparison with isolates obtained from pigs. Veterinary Microbiology, 157 (3-4). pp. 471-475. ISSN 0378-1135 doi: 10.1016/j.vetmic.2012.01.003

Hidalgo, M. , Oruna-Concha, M. J., Kolida, S., Walton, G. E., Kallithraka, S., Spencer, J. P. E., Gibson, G. R. and de Pascual-Teresa, S. (2012) Metabolism of anthocyanins by human gut microflora and their influence on gut bacterial growth. Journal of Agricultural and Food Chemistry, 60 (15). pp. 3882-3890. ISSN 0021-8561 doi: 10.1021/jf3002153

Holloway, A. C., Mueller-Harvey, I., Gould, S. W. J., Fielder, M. D., Naughton, D. P. and Kelly, A. F. (2012) The effect of copper(II), iron(II) sulphate and vitamin C combinations on the weak antimicrobial activity of (+)-catechin against Staphylococcus aureus and other microbes. Metallomics, 4. pp. 1280-1286. ISSN 1756-5901 doi: 10.1039/C2MT20143G

Holmes, E., Kinross, J., Gibson, G., Burcelin, R., Jia, W., Pettersen, S. and Nicholson, J. (2012) Therapeutic modulation of microbiota-host metabolic interactions. Science Translational Medicine. ISSN 1946-6234 (In Press)

Howarth, G. S., Butler, R. N., Salminen, S., Gibson, G. R. and Donovan, S. M. (2012) Probiotics for optimal nutrition: from efficacy to guidelines. Advances in Nutrition, 3. pp. 720-722. ISSN 2156-5376 doi: 10.3945/an.112.002501

Hoyles, L. and McCartney, A. (2012) Genus IV. Mobiluncus. In: Whitman, W. B., Goodfellow, M., Kaempfer, P., Busse, H.-J., Trujillo, M.E., Ludwig, W., Suzuki, K. -i. and Parte, A. (eds.) Bergey’s Manual of Systematic Bacteriology: 2nd edition. The Actinobacteria, part A. Bergey's Manual of Systematic Bacteriology, 5. Springer, pp. 126-139. ISBN 9780387950433

Hoyles, L., Honda, H., Logan, N. A., Halket, G., La Ragione, R. M. and McCartney, A. L. (2012) Recognition of greater diversity of Bacillus species and related bacteria in human faeces. Research in Microbiology, 163 (1). pp. 3-13. ISSN 0923-2508 doi: 10.1016/j.resmic.2011.10.004

Jiménez-Pranteda, M. L., Aguilera, M., McCartney, A. L., Hoyles, L., Jiménez-Valera, M., Náder-Marcías, M. E., Ramos-Cormenzana, A. and Monteoliva-Sánchez, M. (2012) Investigation of the impact of feeding Lactobacillus plantarum CRL 1815 encapsulated in microbially derived polymers on the rat faecal microbiota. Journal of Applied Microbiology, 113 (2). pp. 399-410. ISSN 1365-2672 doi: 10.1111/j.1365-2672.2012.05343.x

Karatzas, K. A. G. (2012) Evaluation and comparison of SYBR Green I Real-Time PCR and TaqMan Real-Time PCR methods for quantitative assay of Listeria monocytogenes in nutrient broth and milk. African Journal of Microbiology Research, 6 (9). pp. 1908-1917. ISSN 1996-0808 doi: 10.5897/AJMR11.889

Karatzas, K. A. G. (2012) Thiamine plays a critical role in the acid tolerance of Listeria monocytogenes. FEMS Microbiology Letters, 326 (2). pp. 137-143. ISSN 0378-1097 doi: 10.1111/j.1574-6968.2011.02442.x

Karatzas, K.-A. G. (2012) The role of phase separation and feed cycle length in leach beds coupled to methanogenic reactors for digestion of a solid substrate (Part 1): Optimisation of reactors’ performance. Bioresource Technology, 103 (1). pp. 56-63. ISSN 0960-8524 doi: 10.1016/j.biortech.2011.09.094

Karatzas, K.-A. G., Suur, L. and O'Byrne, C. P. (2012) Characterisation of the intracellular-glutamate decarboxylase system (GAD): analysis of its function, transcription and role in the acid resistance of various strains of Listeria monocytogenes. Applied and Environmental Microbiology, 78 (10). pp. 3571-3579. ISSN 1098-5336 doi: 10.1128/​AEM.00227-12

La Ragione, R. M., Best, A., Aktan, I., Clifton-Hadley, F. A., Dugdale, A. H., Weyer, U., Crawley, T., Townsend, P., Cooley, W. A., Johnson, L., Wangoo, A., Woodward, M. J. and Wales, A. D. (2012) Escherichia coli O115 forms fewer attaching and effacing lesions in the ovine colon in the presence of E. coli O157:H7. Research in Veterinary Science, 93 (1). pp. 42-45. ISSN 0034-5288 doi: 10.1016/j.rvsc.2011.07.026

Laycock, G., Sait, L., Inman, C., Lewis, M., Smidt, H., van Diemen, P., Jorgensen, F., Stevens, M. and Bailey, M. (2012) A defined intestinal colonization microbiota for gnotobiotic pigs. Veterinary Immunology and Immunopathology, 149 (3-4). pp. 216-224. ISSN 0165-2427 doi: 10.1016/j.vetimm.2012.07.004

Lewis, M., Inman, C. F., Patel, D., Schmidt, B., Imke, M., Miller, B., Gill, B. P., Pluske, J., Kelly , D., Stokes, C. R. and Bailey, M. (2012) Direct experimental evidence that early-life farm environment influences regulation of immune responses. Pediatric Allergy and Immunology, 23 (3). pp. 265-269. ISSN 1399-3038 doi: 10.1111/j.1399-3038.2011.01258.x

Maccaferri, S., Klinder, A., Cacciatore, S., Chittarari, R., Honda, H., Luchinat, C., Bertini, I., Carnevali, P., Gibson, G. R., Brigidi, P. and Costabile, A. (2012) In vitro fermentation of potential prebiotic flours from natural sources: impact on the human colonic microbiota and metabolome. Molecular Nutrition & Food Research, 56 (8). pp. 1342-1352. ISSN 1613-4125 doi: 10.1002/mnfr.201200046

Maki, K. C., Gibson, G. R., Dickmann, R. S., Kendall, C. W., Oliver Chen, C.-Y., Costabile, A., Comeli, E. M., McKay, D. L., Almedia, N. G., Jenkins, D., Zello, G. A. and Blumberg, J. B. (2012) Digestive and physiologic effects of a wheat bran extract, arabino-xylan-oligosaccharide, in breakfast cereal. Nutrition, 28 (11-12). pp. 1151-1121. ISSN 0899-9007 doi: 10.1016/j.nut.2012.02.010

Mappley, L. J., Black, M. L., AbuOun, M., Darby, A. C., Woodward, M. J., Parkhill, J., Turner, A. K., Belgard, M. I., La, T., Phillips, N. D., La Ragione, R. M. and Hampson, D. J. (2012) Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity. BMC Genomics, 13. 454. ISSN 1471-2164 doi: 10.1186/1471-2164-13-454

Mestdagh, R., Dumas, M.-E., Rezzi, S., Kochhar, S., Holmes, E., Claus, S. P. and Nicholson, J. K. (2012) Gut microbiota modulate the metabolism of brown adipose tissue in mice. Journal of Proteome Research, 11 (2). pp. 620-630. ISSN 1535-3893 doi: 10.1021/pr200938v

Mueller-Harvey, I., Feucht, W., Polster, J., Trnkova, L., Burgos, P., Parker, A.W. and Botchway, S.W. (2012) Two-photon excitation with pico-second fluorescence lifetime imaging to detect nuclear association of flavanols. Analytica Chimica Acta, 719. pp. 68-75. ISSN 1873-4324 doi: 10.1016/j.aca.2011.12.068

Nicholson, J., Holmes, E., Kinross, J., Burcelin, R., Gibson, G., Jia, W. and Petttersen, S. (2012) Host-gut microbiota metabolic interactions. Science. ISSN 1095-9203 (In Press)

Niderkorn, V., Mueller-Harvey, I., Le Morvan, A. and Aufrère, J. (2012) Synergistic effects of mixing cocksfoot and sainfoin on in vitro rumen fermentation: role of condensed tannins. Animal Feed Science and Technology, 178 (1-2). pp. 48-56. ISSN 0377-8401 doi: 10.1016/j.anifeedsci.2012.09.014

Nyangale, E. P., Mottram, D. S. and Gibson, G. R. (2012) Gut microbial activity, implications for health and disease: the potential role of metabolite analysis. Journal of Proteome Research, 11 (12). pp. 5573-5585. ISSN 1535-3907 doi: 10.1021/pr300637d

O’Neill , H. V. M., Rademacher, M., Mueller-Harvey, I., Stringano, E., Kightley, S. and Wiseman, J. (2012) Standardised ileal digestibility of crude protein and amino acids of UK-grown peas and faba beans by broilers. Animal Feed Science and Technology, 175 (3-4). pp. 158-167. ISSN 0377-8401 doi: 10.1016/j.anifeedsci.2012.05.004

Rooks, D. J., Libberton, B., Woodward, M. J., Allison, H. E. and McCarthy, A. J. (2012) Development and application of a method for the purification of free shigatoxigenic bacteriophage from environmental samples. Journal of Microbiological Methods, 91 (2). pp. 240-245. ISSN 0167-7012 doi: 10.1016/j.mimet.2012.08.017

Sarbini, S. R., Kolida, S., Gibson, G. and Rastall, B. (2012) In vitro fermentation of commercial α-gluco-oligosaccharide by faecal microbiota from lean and obese human subjects. British Journal of Nutrition. ISSN 0007-1145 (In Press)

Stringano, E., Hayot Carbonero, C., Smith, L. M.J., Brown, R. H. and Mueller-Harvey, I. (2012) Proanthocyanidin diversity in the EU 'HealthyHay' sainfoin (onobrychis viciifolia) germplasm collection. Phytochemistry, 77 . pp. 197-208. ISSN 0031-9422 doi: 10.1016/j.phytochem.2012.01.013

Sánchez-Patán, F., Cueva, C., Monagas, M., Walton, G., Gibson, G., Quintanilla-López, J., Lebrón-Aguilar, R., Martín-Álvarez, P., Moreno-Arribas, M. and Bartolomé, B. (2012) In vitro fermentation of a red wine extract by human gut microbiota: changes in microbial groups and formation of phenolic metabolites. Journal of Agricultural and Food Chemistry, 60 (9). pp. 2136-2147. ISSN 0021-8561 doi: 10.1021/jf2040115

Sánchez-Patán, F., Cueva, C., Monagas, M., Walton, G. E., Gibson, G. R., Martín-Álvarez, P. J., Moreno-Arribas, M. V. and Bartolomé, B. (2012) Gut microbial catabolism of grape seed flavan-3-ols by human faecal microbiota. Targetted analysis of precursor compounds, intermediate metabolites and end-products. Food Chemistry, 131 (1). pp. 337-347. ISSN 0308-8146 doi: 10.1016/j.foodchem.2011.08.011

Toward, R., Montandon, S., Walton, G. and Gibson, G. R. (2012) Effect of prebiotics on the human gut microbiota of elderly persons. Gut Microbes, 3 (1). pp. 57-60. ISSN 1949-0984 doi: 10.4161/gmic.19411

Walton, G., Lu, C., Trogh, I., Arnaut, F. and Gibson, G. R. (2012) A randomised, double-blind, placebo controlled cross-over study to determine the gastrointestinal effects of consumption of arabinoxylanoligosaccharides enriched bread in healthy volunteers. Nutrition Journal, 11 (1). 36. ISSN 1475-2891 doi: 10.1186/1475-2891-11-36

Walton, G., Swann, J. and Gibson, G. (2012) Prebiotics for gut microbiota modulation through diet. In: Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.-H. and Stackebrandt, E. (eds.) The Prokaryotes: A Handbook on the Biology of Bacteria. Springer. ISBN 9780387334882 (In Press)

Walton, G. E., van deb Heauvel, E. G.H.M., Kosters , M. H. W. , Rastall, R. A., Tuohy, K. M. and Gibson, G. R. (2012) A randomised crossover study investigating the effects of galacto-oligosaccharides on the faecal microbiota in men and women over 50 years of age. British Journal of Nutrition, 107 (10). pp. 1466-1475. ISSN 1475-2662 doi: 10.1017/S0007114511004697

Wu, G., Erlicht, R., Mafura, M., Stokes, M., Smith, N., Pritchard, G. C. and Woodward, M. J. (2012) Escherichia coli isolates from extraintestinal organs of livestock animals harbour diverse virulence genes and belong to multiple genetic lineages. Veterinary Microbiology, 160 (1-2). pp. 197-206. ISSN 0378-1135 doi: 10.1016/j.vetmic.2012.05.029

2011

Al-Zeyara, S. A., Jarvis, B. and Mackey, B. M. (2011) The inhibitory effect of natural microflora of food on growth of Listeria monocytogenes in enrichment broths. International Journal of Food Microbiology, 145 (1). pp. 98-105. ISSN 0168-1605 doi: 10.1016/j.ijfoodmicro.2010.11.036

Anjum, M. F., Choudhary, S., Morrison, V., Snow, L. C., Mafura, M., Slickers, P., Ehricht, R. and Woodward, M. J. (2011) Identifying antimicrobial resistance genes of human clinical relevance within Salmonella isolated from food animals in Great Britain. Journal of Antimicrobial Chemotherapy, 66 (3). pp. 550-559. ISSN 0305-7453 doi: 10.1093/jac/dkq498

Arroyo, C., Cebrián, G., Mackey, B. M., Condón, S. and Pagán, R. (2011) Environmental factors influencing the inactivation of Cronobacter sakazakii by high hydrostatic pressure. International Journal of Food Microbiology, 147 (2). pp. 134-143. ISSN 0168-1605 doi: 10.1016/j.ijfoodmicro.2011.03.018

Brouwer, A., Hill, A. and Woodward, M. J. (2011) What makes a Salmonella strain epidemic? An expert opinion workshop. Veterinary Record, 168 (4). 98. ISSN 2042-7670 doi: 10.1136/vr.c5429

Chapman, C. M., Gibson, G. R. and Rowland, I. (2011) Health benefits of probiotics: are mixtures more effective than single strains? European Journal of Nutrition, 50 (1). pp. 1-17. ISSN 1436-6207 doi: 10.1007/s00394-010-0166-z

Charoenwong, D., Andrews, S. and Mackey, B. (2011) Role of rpoS in the Development of Cell Envelope Resilience and Pressure Resistance in Stationary-Phase Escherichia coli. Applied and Environmental Microbiology, 77 (15). pp. 5220-5229. ISSN 0099-2240 doi: 10.1128/AEM.00648-11

Claus, S. P., Ellero, S. L., Berger, B., Krause, L., Bruttin, A., Molina, J., Paris, A., Want, E. J., de Waziers, I., Cloarec, O., Richards, S. E., Wang, Y., Dumas, M.-E., Ross, A., Rezzi, S., Kochhar, S., Van Bladeren, P., Lindon, J. C., Holmes, E. and Nicholson, J. K. (2011) Colonization-induced host-gut microbial metabolic interaction. mBio, 2 (2). e00271-10. ISSN 2150-7511 doi: 10.1128/mBio.00271-10

Costabile, A., Sanghi, S., Martin-Palaez, S., Mueller-Harvey, I., Gibson, G. R., Rastall, R. A. and Klinder, A. (2011) Inhibition of Salmonella Typhimurium by tannins in vitro. Journal of Food, Agriculture & Environment, 9 (1). pp. 119-124. ISSN 1459-0263

Cottell, J. L., Webber, M. A., Coldham, N. G., Taylor, D. L., Cerdeno-Tarraga, A. M., Hauser, H., Thomson, N. R., Woodward, M. and Piddock, L. J. V. (2011) Complete sequence and molecular epidemiology of IncK epidemic plasmid encoding bla(CTX-M-14). Emerging Infectious Diseases, 17 (4). pp. 645-652. ISSN 1080-6040 doi: 10.3201/eid1704.101009

Cysneiros, D., Banks, C. J., Heaven, S. and Karatzas, K.-A. G. (2011) The role of phase separation and feed cycle length in leach beds coupled to methanogenic reactors for digestion of a solid substrate (Part 2): Hydrolysis, acidification and methanogenesis in a two-phase system. Bioresource Technology, 102 (16). pp. 7393-7400. ISSN 0960-8524 doi: 10.1016/j.biortech.2011.05.042

Drakoularakou, A., Rastall, R. and Gibson, G. (2011) Functional foods for the gut: probiotics, prebiotics and synbiotics. In: Saarela, M. (ed.) Functional foods: concept to product. Second edition. Woodhead publishing series in food science, technology and nutrition (205). Woodhead Publishing Ltd, pp. 449-470. ISBN 9781845696900

Ellero-Simatos, S., Claus, S. P., Benelli, C., Forest, C., Letourneur, F., Cagnard, N., Beaune, P. H. and de Waziers, I. (2011) Combined transcriptomic-(1)H NMR metabonomic study reveals yhat monoethylhexyl phthalate stimulates adipogenesis and glyceroneogenesis in human adipocytes. Journal of Proteome Research, 10 (12). pp. 5493-5502. ISSN 1535-3907 doi: 10.1021/pr200765v

Falchero, L., Brown, R., Hanley, S., Karp, A., Shield, I. and Mueller-Harvey, I. (2011) The structural diversity of condensed tannins in willows (salix spp.): a frist screening to improve the nutritional quality of ruminant products. Advances in Animal Biosciences, 2 (2). p. 410. ISSN 2040-4719

Fogliano, V., Corollaro, M. L., Vitaglione, P., Napolitano, A., Ferracane, R., Travaglia, F., Arlorio, M., Costabile, A., Klinder, A. and Gibson, G. (2011) In vitro bioaccessibility and gut biotransformation of polyphenols present in the water-insoluble cocoa fraction. Molecular Nutrition & Food Research, 55 (Supplement). pp. 44-55. ISSN 1613-4125 doi: 10.1002/mnfr.201000360

Gibson, G., (2011) Probiotics and prebiotics. The Biomedical & Life Sciences Collection, Henry Stewart Talks Ltd, London.

Gibson, G. R., Brummer , R. J., Isolauri , E., Lochs , H., Morelli, L., Ockhuizen, T., Rowland, I. R., Schrenzenmeir, J., Stanton, C. and Verbeke, K. (2011) The design of probiotic studies to substantiate health claims. Gut Microbes, 2 (5). pp. 299-305. ISSN 1949-0984 doi: 10.4161/gmic.2.5.18002

Givens, D. I., Gibbs, R. A., Rymer, C. and Brown, R. H. (2011) Effect of intensive vs. free range production on the fat and fatty acid composition of whole birds and edible portions of retail chickens in the UK. Food Chemistry, 127 (4). pp. 1549-1554. ISSN 0308-8146 doi: 10.1016/j.foodchem.2011.02.016

Guarner, F., Sanders, M. E., Gibson, G., Klaenhammer , T., Cabana, M., Scott, K., Reid, G., Delzenne, N. M., Fahey, G. and Hill, C. (2011) Probiotic and prebiotics claims in Europe: Seeking a clear roadmap. British Journal of Nutrition, 106 (11). pp. 1765-1767. ISSN 1475-2662 doi: 10.1017/S0007114511002248

Hatew, B., Pellikaan, W. F., Hendriks, W. H., Mueller-Harvey, I. and Stringano, E. (2011) Effects of condensed tannin extracts from sainfoin (Onobrychis viciifolia Scop) on rumen in vitro methane production and fermentation characteristics. Advances in Animal Biosciences, 2 (2). p. 526. ISSN 2040-4719 doi: http://journals.cambridge.org/action/displayIssue?decade=2010&jid=ABS&volumeId=2&issueId=02&iid=8351771

Heath, P. and Claus, S. (2011) Assessing hepatic metabolic changes during progressive colonization of germ-free mouse by 1H NMR spectroscopy. [Video]

Heath, P. and Claus, S. (2011) Assessing hepatic metabolic changes during progressive colonization of germ-free mouse by 1H NMR spectroscopy. Journal of Visualized Experiments, 58. ISSN 1940-087X doi: 10.3791/3642

Honda, H., Gibson, G. R., Farmer, S., Keller, D. and McCartney, A. L. (2011) Use of a continuous culture fermentation system to investigate the effect of GanedenBC30 (Bacillus coagulans GBI-30, 6086) supplementation on pathogen survival in the human gut microbiota. Anaerobe, 17 (1). pp. 36-42. ISSN 1075-9964 doi: 10.1016/j.anaerobe.2010.12.006

Honda, H., Hoyles, L., Gibson, G. R., Farmer, S., Keller, D. and McCartney, A. L. (2011) Impact of GanedenBC30 (Bacillus coagulans GBI-30, 6086) on population dynamics of the human gut microbiota in a continuous culture fermentation system. International Journal of Probiotics and Prebiotics, 6 (1). pp. 65-72. ISSN 1555-1431

Inness, V. L., Khoo, C., Gross, K. L., Hoyles, L., Gibson, G. R. and McCartney, A. L. (2011) Use of static batch culture systems to investigate the fermentation effects of selected oligosaccharides and fibres by the canine faecal microbiota. International Journal of Probiotics and Prebiotics, 6 (1). pp. 57-64. ISSN 1555-1431

Jia, J., Frantz, N., Khoo, C., Gibson, G. R., Rastall, R. A. and McCartney, A. L. (2011) Investigation of the faecal microbiota of geriatric cats. Letters in Applied Microbiology, 53 (3). pp. 288-293. ISSN 1472-765X doi: 10.1111/j.1472-765X.2011.03105.x

Jia, J., Frantz, N., Khoo, C., Gibson, G. R., Rastall, R. A. and McCartney, A. L. (2011) Investigation of the faecal microbiota of kittens: monitoring bacterial succession and effect of diet. FEMS Microbiology Ecology, 78 (2). pp. 395-404. ISSN 1574-6941 doi: 10.1111/j.1574-6941.2011.01172.x

Karatzas, K. A. G. (2011) Assessing the microbial oxidative stress mechanism of ozone treatment through the responses of Escherichia coli mutants. Journal of Applied Microbiology, 111 (1). pp. 136-144. ISSN 1364-5072 doi: 10.1111/j.1365-2672.2011.05021.x

Kolida, S. and Gibson, G. (2011) Synbiotics in health and disease. Food Science and Technology , 2. pp. 373-393.

Le, T. M. V., AbuOun, M., Morrison, V., Thomson, N., James, I. C., Woodward, M. J., Nguyen, V. V. C., Jeremy, F., Constance, S. and Stephen, B. (2011) Differential phenotypic and genotypic characteristics of qnrS1-harboring plasmids carried by hospital and community commensal enterobacteria. Antimicrobial Agents and Chemotherapy, 55 (4). pp. 1798-1802. ISSN 1098-6596 doi: 10.1128/aac.01200-10

Manolaraki, F., Smith, L., Hayot, C., Pelikaan, W., Halbwrith, H., Stich, K., Treutter, D., Regos, I., Mueller-Harvey, I., Stringano, E. and Hoste, H. (2011) Differences in anthelmintic activity of sainfoin (Onobrychis viciifoliae) depend on varieties: possible relationships with flavonoid composition. Advances in Animal Biosciences, 2 (2). p. 345. ISSN 2040-4719

Mappley, L. J., Tchorzewska, M. A., Cooley, W. A., Woodward, M. J. and La Ragione, R. M. (2011) Lactobacilli antagonize the growth, motility, and adherence of brachyspira pilosicoli: a potential intervention against avian intestinal spirochetosis. Applied and Environmental Microbiology, 77 (15). pp. 5402-5411. ISSN 0099-2240 doi: 10.1128/aem.00185-11

Merrifield, C. A., Lewis, M., Claus, S. P., Beckonert, O. P., Dumas, M.-E., Duncker, S., Kochhar, S., Rezzi, S., Lindon, J. C., Bailey, M., Holmes, E. and Nicholson, J. K. (2011) A metabolic system-wide characterisation of the pig: a model for human physiology. Molecular Biosystems, 7 (9). pp. 2577-2588. ISSN 1742-206X doi: 10.1039/c1mb05023k

Mueller-Harvey, I., Martin-Lorenzo , M., Stringano, E., Barnes, R. J., Oliver, J., Theodoridou, K., Aufrere, J., Bayissa, C., Pellikaan, W., Manolaraki, F., Hoste, F., Hayot Carbonero, C. and Smith, L. (2011) NIR spectroscopy for predicting the nutritional, anthelminitic and environmental effects of sainfoin. Advances in Animal Biosciences, 2 (2). p. 265. ISSN 2040-4719

Mulder, I., Schmidt, B., Lewis, M., Delday, M., Stokes, C., Bailey, M., Aminov, R., Gill, B., Pluske, J., Mayer, C.-D. and Kelly, D. (2011) Restricting microbial exposure in early life negates the immune benefits associated with gut colonization in environments of high microbial diversity. PLoS ONE, 6 (12). e28279. ISSN 1932-6203 doi: 10.1371/journal.pone.0028279

O'Byrne, C.P. , Feehily, C. , Ham, R. and Karatzas, K.-A. G. (2011) A modified rapid enzymatic microtiter plate assay for the quantification of intracellular γ-aminobutyric acid and succinate semialdehyde in bacterial cells. Journal of Microbiological Methods, 84 (1). pp. 137-139. ISSN 0167-7012 doi: 10.1016/j.mimet.2010.10.017

Ogué-Bon, E., Khoo, C., Hoyles, L., McCartney, A. L., Gibson, G. R. and Rastall, R. A. (2011) In vitro fermentation of rice bran combined with Lactobacillus acidophilus 14 150B or Bifidobacterium longum 05 by the canine faecal microbiota. FEMS microbiology ecology, 75 (3). pp. 365-376. ISSN 1574-6941 doi: 10.1111/j.1574-6941.2010.01014.x

Pellikaan, W. F., Stringano, E., Leenaars, J., Bongers, D. J. G. M., Van Laar-Van Schuppen, S., Plant, J. and Mueller-Harvey, I. (2011) Evaluating the effects of tannins on the extent and rate of in vitro measured gas and methane production using the Automated Pressure Evaluation System (APES). Animal Feed Science and Technology, 166-167. pp. 377-390. ISSN 0377-8401 doi: 10.1016/j.anifeedsci.2011.04.072

Saunders, M. P., Wu, G., Abuoun, M., Pan, Z., Anjum, M. and Woodward, M. J. (2011) Optical genetic mapping defines regions of chromosomal variation in serovars of S. enterica subsp enterica of concern for human and animal health. Epidemiology and Infection, 139 (7). pp. 1065-1074. ISSN 0950-2688 doi: 10.1017/s0950268810002086

Schmidt, B., Mulder, I., Musk, C., Aminov, R., Lewis, M., Stokes, C., Bailey, M., Prosser, J., Gill, B., Plusk, J. and Kelly, D. (2011) Establishment of normal gut microbiota is compromised under excessive hygiene conditions. PLoS ONE, 6 (12). e28284. ISSN 1932-6203 doi: 10.1371/journal.pone.0028284

Senior, N. J., Bagnall, M. C., Champion, O. L., Reynolds, S. E., La Ragione, R. M., Woodward, M. J., Salguero, F. J. and Titball, R. W. (2011) Galleria mellonella as an infection model for Campylobacter jejuni virulence. Journal of Medical Microbiology, 60 (5). pp. 661-669. ISSN 0022-2615 doi: 10.1099/jmm.0.026658-0

Shen, Q., Tuohy, K. M., Gibson, G. R. and Ward, R. E. (2011) In vitro measurement of the impact of human milk oligosaccharides on the faecal microbiota of weaned formula-fed infants compared to a mixture of prebiotic fructooligosaccharides and galactooligosaccharides. Letters in Applied Microbiology, 52 (4). pp. 337-343. ISSN 0266-8254 doi: 10.1111/j.1472-765X.2011.03005.x

Stringano, E., Cramer, R., Hayes, W., Smith, C., Gibson, T. and Mueller-Harvey, I. (2011) Deciphering the complexity of sainfoin (Onobrychis viciifolia) proanthocyanidins by MALDI-TOF mass spectrometry with a judicious choice of isotope patterns and matrixes. Analytical Chemistry, 83 (11). pp. 4147-4153. ISSN 0003-2700 doi: 10.1021/ac2003856

Stringano, E., Gea , A., Salminen, J.-P. and Mueller-Harvey, I. (2011) Simple solution for a complex problem: Proanthocyanidins, galloyl glucoses and ellagitannins fit on a single calibration curve in high performance-gel permeation chromatography. Journal of Chromatography A, 1218 (43). pp. 7804-7812. ISSN 0021-9673 doi: 10.1016/j.chroma.2011.08.082

Swann, J. R., Tuohy, K. M., Lindfors, P. , Brown , D. T., Gibson, G. R., Wilson, I. D., Sidaway, J., Nicholson, J. K. and Holmes, E. (2011) Variation in antibiotic-induced microbial recolonization impacts on the host metabolic phenotypes of rats. Journal of Proteome Research, 10 (8). pp. 3590-3603. ISSN 1535-3907 doi: 10.1021/pr200243t

Swann, J. R., Want, E. J., Geier, F. M., Spagou, K., Wilson, I. D. , Sidaway, J. E., Nicholson, J. K. and Holmes, E. (2011) Systemic gut microbial modulation of bile acid metabolism in host tissue compartments. Proceedings of the National Academy of Sciences, 108 (Supplement). pp. 4523-4530. ISSN 1091-6490 doi: 10.1073/pnas.1006734107 (Microbes and Health Sackler Colloquium)

Tree, J. J., Roe, A. J., Flockhart, A., McAteer, S. P., Xu, X. F., Shaw, D., Mahajan, A., Beatson, S. A., Best, A., Lotz, S., Woodward, M. J., La Ragione, R., Murphy, K. C., Leong, J. M. and Gally, D. L. (2011) Transcriptional regulators of the GAD acid stress island are carried by effector protein-encoding prophages and indirectly control type III secretion in enterohemorrhagic Escherichia coli O157:H7. Molecular Microbiology, 80 (5). pp. 1349-1365. ISSN 0950-382X doi: 10.1111/j.1365-2958.2011.07650.x

Tzounis, X., Rodriguez Mateos, A., Vulevic, J., Gibson, G. R., Kwik-Uribe, C. and Spencer, J. P. E. (2011) Prebiotic evaluation of cocoa-derived flavanols in healthy humans by using a randomized, controlled, double-blind, crossover intervention study. American Journal of Clinical Nutrition, 93 (1). pp. 62-72. ISSN 1938-3207 doi: 10.3945/ajcn.110.000075

Veereman-Wauters, G., Staelens, S., Van de Broek, H., Plaskie, K., Wesling, F., Roger, L. C., McCartney, A. L. and Assam, P. (2011) Physiological and bifidogenic effects of prebiotic supplements in infant formulae. Journal of Pediatric Gastroenterology and Nutrition, 52 (6). pp. 763-771. ISSN 0277-2116 doi: 10.1097/MPG.0b013e3182139f39

2010

Abecia, L., Hoyles, L., Khoo, C., Frantz, N. and McCartney, A. L. (2010) Effects of a novel galactooligosaccharide on the faecal microbiota of healthy and inflammatory bowel disease cats during a randomized, double-blind, cross-over feeding study. International Journal of Probiotics and Prebiotics, 5 (2). pp. 61-68. ISSN 1555-1431

Abecia, L., McCartney, A. L. and Klinder, A. (2010) In vitro investigation of the effects of tryptophan fermentation products on immune response. Proceedings of the Nutrition Society, 69 (OCE3). E262. ISSN 0029-6651 doi: 10.1017/S0029665110000510

Beards, E., Tuohy, K. M. and Gibson, G. R. (2010) Bacterial, SCFA and gas profiles of a range of food ingredients following in vitro fermentation by human colonic microbiota. Anaerobe, 16 (4). pp. 420-425. ISSN 1075-9964 doi: 10.1016/j.anaerobe.2010.05.006

Beards, E., Tuohy, K. M. and Gibson, G. R. (2010) A human volunteer study to assess the impact of confectionery sweeteners on the gut microbiota composition. British Journal of Nutrition, 104 (5). pp. 701-708. ISSN 1475-2662 doi: 10.1017/S0007114510001078

Bialonska, D., Ramnani, P., Kasimsetty, S. G., Muntha, K. R., Gibson, G. R. and Ferreira, D. (2010) The influence of pomegranate by-product and punicalagins on selected groups of human intestinal microbiota. International Journal of Food Microbiology, 140 (2-3). pp. 175-182. ISSN 0168-1605 doi: 10.1016/j.ijfoodmicro.2010.03.038

Champion, O. L., Karlyshev, A. V., Senior, N. J., Woodward, M. J., La Ragione, R., Howard, S. L., Wren, B. W. and Titball, R. W. (2010) Insect infection model for campylobacter jejuni reveals that O-methyl phosphoramidate has insecticidal activity. Journal of Infectious Diseases, 201 (5). pp. 776-782. ISSN 0022-1899 doi: 10.1086/650494

Coldham, N. G., Webber, M., Woodward, M. J. and Piddock, L. J. V. (2010) A 96-well plate fluorescence assay for assessment of cellular permeability and active efflux in Salmonella enterica serovar Typhimurium and Escherichia coli. Journal of Antimicrobial Chemotherapy, 65 (8). pp. 1655-1663. ISSN 0305-7453 doi: 10.1093/jac/dkq169

Collins , J. W., Coldham , N. G., Salguero, F. J., Cooley, W. A., Newell, W. R., Rastall, R. A., Gibson, G. R., Woodward, M. J. and LaRagione, R. M. (2010) Response of porcine intestinal in vitro organ culture tissues following exposure to Lactobacillus plantarum JC1 and Salmonella Typhimurium SL1344. Applied and Environmental Microbiology, 76 (19). pp. 6645-6657. ISSN 0099-2240 doi: 10.1128/AEM.03115-09

Costabile, A., Kolida, S., Klinder, A., Gielt, E., Bäuerlein, M., Frohberg, C., Landschütze, V. and Gibson, G. R. (2010) A double-blind, placebo-controlled, cross-over study to establish the bifidogenic effect of a very-long-chain inulin extracted from globe artichoke (Cynara scolymus) in healthy human subjects. British Journal of Nutrition, 104 (7). pp. 1007-1017. ISSN 1475-2662 doi: 10.1017/S0007114510001571

Delsol, A. A., Halfhide, D. E., Bagnall, M. C., Randall, L. P., Enne, V. I., Woodward, M. J. and Roe, J. M. (2010) Persistence of a wild type Escherichia coli and its multiple antibiotic-resistant (MAR) derivatives in the abattoir and on chilled pig carcasses. International Journal of Food Microbiology, 140 (2-3). pp. 249-253. ISSN 0168-1605 doi: 10.1016/j.ijfoodmicro.2010.03.023

Devetyarov, D., Woodward, M. J., Coldham, N., Anjum, M. and Gammerman, A. (2010) A new bioinformatics tool for prediction with confidence. In: International Conference on Bioinformatics Computational Biology, BIOCOMP 2010, July 12-15, 2010, Las Vegas Nevada, USA.

Drakoularakou, A., Tzortzis, G., Rastall, R. A. and Gibson, G. R. (2010) A double-blind, placebo-controlled, randomized human study assessing the capacity of a novel galacto-oligosaccharide mixture in reducing travellers' diarrhoea. European Journal of Clinical Nutrition, 64. pp. 146-152. ISSN 1476-5640 doi: 10.1038/ejcn.2009.120

Fenner, J. S., Anjum, M. F., Randall, L. P., Pritchard, G. C., Wu, G., Errington, J., Dailey, C. G. and Woodward, M. J. (2010) Analysis of 16S rDNA sequences from pathogenic Leptospira serovars and use of single nucleotide polymorphisms for rapid speciation by D-HPLC. Research in Veterinary Science, 89 (1). pp. 48-57. ISSN 0034-5288 doi: 10.1016/j.rvsc.2009.12.014

Gibson, G. R., Scott, K. P., Rastall, R. A., Tuohy, K. M., Hotchkiss, A., Dubert-Ferrandon, A., Gareau, M., Murphy, E. F., Saulnier, D., Loh, G., Macfarlane , S., Delzenne, N., Ringel, Y., Kozianowski, G., Dickmann, R., Lenoir-Wijnkook, I., Walker, C. and Buddington, R. (2010) Dietary prebiotics: current status and new definition. IFIS Functional Foods Bulletin, 7. pp. 1-19.

Gomez, E., Tuohy, K.M., Gibson, G.R., Klinder, A. and Costabile, A. (2010) In vitro evaluation of the fermentation properties and potential prebiotic activity of Agave fructans. Journal of Applied Microbiology, 108 (6). pp. 2114-2121. ISSN 1364-5072 doi: 10.1111/j.1365-2672.2009.04617.x

Hoyles, L. and Wallace, R. J. (2010) Gastrointestinal tract: fat metabolism in the colon. In: Timmis, K. N. (ed.) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin, pp. 3111-3118. ISBN 9783540775843 doi: 10.1007/978-3-540-77587-4_233

Hoyles, L. and Wallace, R.J. (2010) Gastrointestinal tract: intestinal fatty acid metabolism and implications for health. In: Timmis, K. (ed.) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin, pp. 3119-3132. ISBN 9783540775843 doi: 10.1007/978-3-540-77587-4_234

Huehn, S., La Ragione, R. M., Anjum, M., Saunders, M., Woodward, M. J., Bunge, C., Helmuth, R., Hauser, E., Guerra, B., Beutlich, J., Brisabois, A., Peters, T., Svensson, L., Madajczak, G., Litrup, E., Imre, A., Herrera-Leon, S., Mevius, D., Newell, D. G. and Malorny, B. (2010) Virulotyping and antimicrobial resistance typing of salmonella enterica serovars relevant to human health in Europe. Foodborne Pathogens and Disease, 7 (5). pp. 523-535. ISSN 1535-3141 doi: 10.1089/fpd.2009.0447

Inman, C., Singha, S., Lewis, M., Bradley, B., Stokes, C. and Bailey, M. (2010) Dendritic cells interact with CD4 T cells in intestinal mucosa. Journal of Leukocyte Biology, 88 (3). pp. 571-578. ISSN 1938-3673 doi: 10.1189/jlb.0310161

Jia, J., Frantz, N., Khoo, C., Gibson, G. R., Rastall, R. A. and McCartney, A. L. (2010) Investigation of the faecal microbiota associated with canine chronic diarrhoea. FEMS Microbiology Ecology, 71 (2). pp. 304-12. ISSN 1574-6941 doi: 10.1111/j.1574-6941.2009.00812.x

Karatzas, K.-A. G., Breannan, O., Heavin, S., Morrisey, J. and O'Byrne, C. O. (2010) Intracellular accumulation of high levels of gamma-aminobutyrate by Listeria monocytogenes 10403S in response to low pH: uncoupling of gamma-aminobutyrate synthesis from efflux in a chemically defined medium. Applied and Environmental Microbiology, 76 (11). pp. 3529-3537. ISSN 0099-2240 doi: 10.1128/AEM.03063-09

Kauko, T., Haukka, K., AbuOun, M., Anjum, M. F., Woodward, M. J. and Siitonen, A. (2010) Phenotype MicroArray (TM) in the metabolic characterisation of Salmonella serotypes Agona, Enteritidis, Give, Hvittingfoss, Infantis, Newport and Typhimurium. European Journal of Clinical Microbiology & Infectious Diseases, 29 (3). pp. 311-317. ISSN 0934-9723 doi: 10.1007/s10096-009-0859-5

Keller, D., Farmer, S., McCartney, A. and Gibson, G. (2010) Bacillus coagulans as a probiotic. Food Science and Technology Bulletin: Functional Foods. ISSN 1476-2137

Klotz, B., Manas, P. and Mackey, B. M. (2010) The relationship between membrane damage, release of protein and loss of viability in Escherichia coli exposed to high hydrostatic pressure. International Journal of Food Microbiology, 137 (2-3). pp. 214-220. ISSN 0168-1605 doi: 10.1016/j.ijfoodmicro.2009.11.020

Lahtinen, S. J., Knoblock, K., Drakoularakou, A., Jacob, M., Stowell, J., Gibson, G. R. and Ouwehand, A. C. (2010) Effect of molecule branching and glycosidic linkage on the degradation of polydextrose by gut microbiota. Bioscience, Biotechnology, and Biochemisty , 74 (10). pp. 2016-2021. ISSN 1347-6947 doi: 10.1271/bbb.100251

Lewis, M., Inman, C. F. and Bailey, M. (2010) Postnatal development of the mucosal immune system and consequences on health in adulthood. Canadian Journal of Animal Science, 90 (2). pp. 129-136. ISSN 1918-1825 doi: 10.4141/CJAS09112

Maccaferri, S., Vitali, B., Klinder, A., Kolida, S., Ndagijimana, M., Laghi, L., Calanni, F., Brigidi, P., Gibson, G. R. and Costabile, A. (2010) Rifaximin modulates the colonic microbiota of patients with Crohn's disease: an in vitro approach using a continuous culture colonic model system. Journal of Antimicrobial Chemotherapy, 65 (12). pp. 2556-2565. ISSN 0305-7453 doi: 10.1093/jac/dkq345

Mueller-Harvey, I., Botchway, S., Feucht, W., Polster, J., Burgos, P. and Parker, A. (2010) Fluorescence lifetime imaging microscopy (FLIM) to demonstrate the nuclear binding of flavanols and (--epigallocatechin gallate. Planta Medica, 76 (12). O_7. ISSN 1439-0221 doi: 10.1055/s-0030-1264193

Ogué-Bon, E., Khoo, C., McCartney, A. L., Gibson, G. R. and Rastall, R. A. (2010) In vitro effects of synbiotic fermentation on the canine faecal microbiota. FEMS microbiology ecology, 73 (3). pp. 587-600. ISSN 1574-6941 doi: 10.1111/j.1574-6941.2010.00915.x

Parracho, H. M. R. T., Gibson, G. R., Knott, F. , Bosscher, D., Kleerebezem, M. and McCartney, A. L. (2010) A double-blind, placebo-controlled, crossover-designed probiotic feeding study in children diagnosed with autistic spectrum disorders. International Journal of Probiotics and Prebiotics, 5 (2). pp. 69-74. ISSN 1555-1431

Ramnani, P., Gaudier , E., Bingham , M., van Bruggen , P., Tuohy, K. M. and Gibson, G. R. (2010) Prebiotic effect of fruit and vegetable shots containing Jerusalem artichoke inulin : a human intervention study. British Journal of Nutrition, 104 (2). pp. 233-240. ISSN 1475-2662 doi: 10.1017/S000711451000036X

Ramnani, P., Jarvis, B. and Mackey, B. M. (2010) Comparison between pre-enrichment in single- or double-strength buffered peptone water for recovery of Salmonella enterica serovar Typhimurium DT104 from acidic marinade sauces containing spices. Food Control, 21 (9). pp. 1303-1306. ISSN 0956-7135 doi: 10.1016/j.foodcont.2010.03.005

Roberfroid , M., Gibson, G. R., Hoyles, L., McCartney, A. L., Rastall, R. , Rowland, I. , Wolvers, D., Watztl, B., Szajewska, H., Stahl, B., Guarner, F., Respondek, F., Whelan, K., Coxam, V., Davicco, M., Léotoing, L., Wittrant, Y., Delzenne, N., Cani, P., Neyrinck, A. and Meheust, A. (2010) Prebiotic effects: metabolic and health benefits. British Journal of Nutrition, 104 (S2). S1-S63. ISSN 0007-1145 doi: 10.1017/S0007114510003363

Roger, L. C. and McCartney, A. L. (2010) Longitudinal investigation of the faecal microbiota of healthy full-term infants using fluorescence in situ hybridization and denaturing gradient gel electrophoresis. Microbiology, 156 (11). pp. 3317-3328. ISSN 1465-2080 doi: 10.1099/mic.0.041913-0

Roger, L. C., Costabile, A., Holland, D. T., Hoyles, L. and McCartney, A. L. (2010) Examination of faecal Bifidobacterium populations in breast- and formula-fed infants during the first 18 months of life. Microbiology, 156 (11). pp. 3329-3341. ISSN 1465-2080 doi: 10.1099/mic.0.043224-0

Rooks, D. J., Smith, D. L., McDonald, J. E., Woodward, M. J., McCarthy, A. J. and Allison, H. E. (2010) 454-pyrosequencing: a molecular battiscope for freshwater viral ecology. Genes, 1 (2). pp. 210-226. ISSN 2073-4425 doi: 10.3390/genes1020210

Rooks, D. J., Yan, Y. X., McDonald, J. E., Woodward, M. J., McCarthy, A. J. and Allison, H. E. (2010) Development and validation of a qPCR-based method for quantifying Shiga toxin-encoding and other lambdoid bacteriophages. Environmental Microbiology, 12 (5). pp. 1194-1204. ISSN 1462-2912 doi: 10.1111/j.1462-2920.2010.02162.x

Sagarzazu, N., Cebrián, G., Condón, S., Mackey, B. M. and Mañas, P. (2010) High hydrostatic pressure resistance of Campylobacter jejuni after different sublethal stresses. Journal of Applied Microbiology, 109 (1). pp. 146-155. ISSN ISSN 1364-5072 doi: 10.1111/j.1365-2672.2009.04639.x

Sargeant, H. R., Shaw, M. A., AbuOun, M., Collins, J. W., Woodward, M. J., La Ragione, R. M. and Miller, H. M. (2010) The metabolic impact of zinc oxide on porcine intestinal cells and enterotoxigenic Escherichia coli K88. Livestock Science, 133 (1-3). pp. 45-48. ISSN 1871-1413 doi: 10.1016/j.livsci.2010.06.021

Saric, J., Li, J. V., Swann, J., Utzinger, J., Calvert, G., Nicholson, J. K., Dirnhofer, S., Dallman, M. J., Bictash, M. and Holmes, E. (2010) Integrated cytokine and metabolic analysis of pathological responses to parasite exposure in rodents. Journal of Proteome Research, 9 (5). pp. 2255-2264. ISSN 1535-3893 doi: 10.1021/pr901019z

Searle, L. E. J., Cooley, W. A., Jones, G., Nunez, A., Crudgington, B., Weyer, U., Dugdale, A. H., Tzortzis, G., Collins, J. W., Woodward, M. and La Ragione, R. M. (2010) Purified galactooligosaccharide, derived from a mixture produced by the enzymic activity of Bifidobacterium bifidum, reduces Salmonella enterica serovar Typhimurium adhesion and invasion in vitro and in vivo. Journal of Medical Microbiology, 59 (12). pp. 1428-1439. ISSN 0022-2615 doi: 10.1099/jmm.0.022780-0

Somolinos, M., García, D., Condón, S., Mackey, B. M. and Pagán, R. (2010) Inactivation of Escherichia coli by citral. Journal of Applied Microbiology, 108 (6). 1928-1939.. ISSN ISSN 1364-5072 doi: 10.1111/j.1365-2672.2009.04597.x

Walton, G. E. and Gibson, G. R. (2010) Gut microbiota, probiotics, prebiotics and colorectal cancer. In: Milner, J. A. and Romagnolo, D. F. (eds.) Bioactive compounds and cancer. Humana Press/Springer , pp. 181-193. doi: 10.1007/978-1-60761-627-6

Walton, G. E., Lim, Y., Ng, Y., Hannah, R. and Hunter, K. (2010) Prebiotics and probiotics: potential strategies for reducing travellers' diarrhoea in athletes competing abroad. Food Science and Technology Bulletin: Functional Foods, 6 (9). pp. 105-114. ISSN 1476-2137

Walton, G. E., Rastall, R. A., Martini, M., Williams, C., Jeffries, R. and Gibson, G. R. (2010) A double-blind, placebo controlled human study investigating the effects of coffee derived manno-oligosaccharides on the faecal microbiota of a healthy adult population. International Journal of Probiotics and Prebiotics, 5 (2). pp. 75-84. ISSN 1555-1431

Wu, G. H., AbuOun, M., Hackl, E., La Ragione, R. M., Fookes, M., Fenner, J., Pan, Z. S., Wenzl, P., Anjum, M. F. and Woodward, M. J. (2010) Epidemic multidrug-resistant (MDR-AmpC) Salmonella enterica serovar Newport strains contain three phage regions and a MDR resistance plasmid. Environmental Microbiology Reports, 2 (2). pp. 228-235. ISSN 1758-2229 doi: 10.1111/j.1758-2229.2009.00095.x

Wu, G., Mafura, M., Carter, B., Lynch, K., Anjum, M. F., Woodward, M. J. and Pritchard, G. C. (2010) Genes associated with Escherichia coli isolates from calves with diarrhoea and/or septicaemia. Veterinary Record, 166 (22). pp. 691-692. ISSN 0042-4900 doi: 10.1136/vr.b4791

2009

AbuOun, M., Suthers, P. F., Jones, G. I., Carter, B. R., Saunders, M. P., Maranas, C. D., Woodward, M. J. and Anjum, M. F. (2009) Genome scale reconstruction of a Salmonella metabolic model comparison of similarity and differences with a commensal Escherichia coli strain. The Journal of Biological Chemistry, 284 (43). pp. 29480-29488. ISSN 1083-351X doi: 10.1074/jbc.M109.005868

Aktan, I., Woodward, M. and La Ragione, R. M. (2009) Interaction between attaching-effacing Escherichia coli O26:K60 and O157:H7 in young lambs. Research in Veterinary Science, 87 (1). pp. 13-15. ISSN 0034-5288 doi: 10.1016/j.rvsc.2008.11.006

Bailey, A. M., Constantinidou, C., Ivens, A., Garvey, M. I., Webber, M. A., Coldham, N., Hobman, J. L., Wain, J., Woodward, M. J. and Piddock, L. J. V. (2009) Exposure of Escherichia coli and Salmonella enterica serovar Typhimurium to triclosan induces a species-specific response, including drug detoxification. Journal of Antimicrobial Chemotherapy, 64 (5). pp. 973-985. ISSN 0305-7453 doi: 10.1093/jac/dkp320

Best, A., Clifford, D., Crudgington, B., Cooley, W. A., Nunez, A., Carter, B., Weyer, U., Woodward, M. J. and La Ragione, R. M. (2009) Intermittent Escherichia coli O157:H7 colonisation at the terminal rectum mucosa of conventionally-reared lambs. Veterinary Research, 40 (1). 40:09. ISSN 0928-4249 doi: 10.1051/vetres:2008047

Blair, J. M. A., La Ragione, R. M., Woodward, M. J. and Piddock, L. J. V. (2009) Periplasmic adaptor protein AcrA has a distinct role in the antibiotic resistance and virulence of Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 64 (5). pp. 965-972. ISSN 0305-7453 doi: 10.1093/jac/dkp311

Collins, J. W., La Ragione, R. M., Woodward, M. J. and Searle, L. E. J. (2009) Application of pre- and probiotics in livestock. In: Charalampopoulos, D. and Rastall, R. A. (eds.) Prebiotics and Probiotics Science and Technology. Springer-Verlag, New York, pp. 57-88. ISBN 9780387790572

Cox, R., Woodward, M. J. and Clough, H. E. (2009) The epidemiology of antimicrobial resistance in incidents of nontyphoidal Salmonella isolates from livestock in the UK: trends, seasonality and changes. In: International Symposia on Veterinary Epidemiology and Economics.

Duarte, I. F., Legido-Quigley, C., Parker, D. A., Swann, J., Spraul, M., Braumann, U., Gil, A. M., Holmes, E., Nicholson, J. K., Murphy, G. M., Vilca-Melendez, H., Heaton, N. and Lindon, J. C. (2009) Identification of metabolites in human hepatic bile using 800 MHz 1H NMR spectroscopy, HPLC-NMR/MS and UPLC-MS. Molecular Biosystems, 5. pp. 180-190. ISSN 1742-206X doi: 10.1039/B814426E

Eveillard, A., Lasserre, F., de Tayrac, M., Polizzi, A., Claus, S., Canlet, C., Mselli-Lakhal, L., Gotardi, G., Paris, A., Guillou, H., Martin, P. G. P. and Pineau, T. (2009) Identification of potential mechanisms of toxicity after di-(2-ethylhexyl)-phthalate (DEHP) adult exposure in the liver using a systems biology approach. Toxicology and applied pharmacology, 236 (3). pp. 282-292. ISSN 0041-008X doi: 10.1016/j.taap.2009.02.008

Hoyles, L. (2009) In vitro examination of the effect of Orlistat on the ability of the faecal microbiota to utilize dietary lipids. PhD thesis, University of Reading.

Hoyles, L. and McCartney, A. L. (2009) What do we mean when we refer to Bacteroidetes populations in the human gastrointestinal microbiota? FEMS Microbiology Letters, 299 (2). pp. 175-183. ISSN 0378-1097 doi: 10.1111/j.1574-6968.2009.01741.x

La Ragione, R. M., Best, A., Woodward, M. J. and Wales, A. D. (2009) Escherichia coli O157:H7 colonization in small domestic ruminants. FEMS Microbiology Reviews, 33 (2). pp. 394-410. ISSN 1574-6976 doi: 10.1111/j.1574-6976.2008.00138.x

Mahajan, A., Currie, C. G., Mackie, S., Tree, J., McAteer, S., McKendrick, I., McNeilly, T. N., Roe, A., La Ragione, R. M., Woodward, M. J., Gally, D. L. and Smith, D. G. E. (2009) An investigation of the expression and adhesin function of H7 flagella in the interaction of Escherichia coli O157: H7 with bovine intestinal epithelium. Cellular Microbiology, 11 (1). pp. 121-137. ISSN 1462-5814 doi: 10.1111/j.1462-5822.2008.01244.x

Mulder, I., Schmidt, B., Stokes, C., Lewis, M. C.,, Bailey, M., Aminov, R., Prosser, J., Gill, B., Pluske, J., Mayer, C.-D., Musk, C. and Kelly, D. (2009) Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces. BMC Biology, 7 (79). ISSN 1741-7007 doi: 10.1186/1741-7007-7-79

Pan, Z. S., Carter, B., Nunez-Garcia, J., AbuOun, M., Fookes, M., Ivens, A., Woodward, M. J. and Anjum, M. F. (2009) Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport. Microbiology-Sgm, 155. pp. 3200-3213. ISSN 1350-0872 doi: 10.1099/mic.0.029405-0

Roger, L.C. and McCartney, A.L. (2009) The application of prebiotics and synbiotics in pediatrics. In: Michail, S. and Sherman, P.M. (eds.) Probiotics in pediatric medicine. Nutrition and health series. Humana, Totowa, New Jersey, pp. 307-322. ISBN 9781603272889 doi: 10.1007/978-1-60327-289-6

Salazar, N., Ruas-Madiedo, P., Kolida, S., Collins, M., Rastall, R., Gibson, G. and de los Reyes-Gavilan, C.G. (2009) Exopolysaccharides produced by Bifidobacterium longum IPLA E44 and Bifidobacterium animalis subsp lactis IPLA R1 modify the composition and metabolic activity of human faecal microbiota in pH-controlled batch cultures. International Journal of Food Microbiology, 135 (3). pp. 260-267. ISSN 0168-1605 doi: 10.1016/j.ijfoodmicro.2009.08.017

Searle, L. E. J., Best, A., Nunez, A., Salguero, F. J., Johnson, L., Weyer, U., Dugdale, A. H., Cooley, W. A., Carter, B., Jones, G., Tzortzis, G., Woodward, M. J. and La Ragione, R. M. (2009) A mixture containing galactoollgosaccharide, produced by the enzymic activity of Bifidobacterium bifidum, reduces Salmonella enterica serovar Typhimurium infection in mice. Journal of Medical Microbiology, 58 (1). pp. 37-48. ISSN 0022-2615 doi: 10.1099/jmm.0.004390-0

Simons, R., Brouwer, A., Hill, A. and Woodward, M. J. (2009) Assessing the effectiveness of GB cattle surveillance in detecting new epidemic strains of Salmonella. In: International Symposia on Veterinary Epidemiology and Economics.

Swann, J., Wang, Y., Abecia, L., Costabile, A., Tuohy, K., Gibson, G., Roberts, D., Sidaway, J., Jones, H., Wilson, I. D., Nicholson, J. and Holmes, E. (2009) Gut microbiome modulates the toxicity of hydrazine: a metabonomic study. Molecular Biosystems, 5. pp. 351-355. ISSN 1742-206X

Verner-Jeffreys, D. W., Welch, T. J., Schwarz, T., Pond, M. J., Woodward, M. J., Haig, S. J., Rimmer, G. S. E., Roberts, E., Morrison, V. and Baker-Austin, C. (2009) High prevalence of multidrug-tolerant bacteria and associated antimicrobial resistance genes isolated from ornamental fish and their carriage water. PLoS ONE, 4 (12). e8388. ISSN 1932-6203 doi: 10.1371/journal.pone.0008388

Waldram, A., Holmes, E., Wang, Y.L., Rantalainen, M., Wilson, I.D., Tuohy, K.M., McCartney, A.L., Gibson, G.R. and Nicholson, J.K. (2009) Top-down systems biology modeling of host metabotype-microbiome associations in obese rodents. Journal of Proteome Research, 8 (5). pp. 2361-2375. ISSN 1535-3893 doi: 10.1021/pr8009885

Wragg, P., La Ragione, R. M., Best, A., Relchel, R., Anjum, M. F., Mafura, A. and Woodward, M. J. (2009) Characterisation of Escherichia fergusonii isolates from farm animals using an Escherichia coli virulence gene array and tissue culture adherence assays. Research in Veterinary Science, 86 (1). pp. 27-35. ISSN 0034-5288 doi: 10.1016/j.rvsc.2008.05.014

2008

Abram, F., Starr, E., Karatzas, K.-A. G., Wasowska-Matlawska, K., Boyd, A., Wiedmann, M., Boor, K. J., Connally, D. and O'Bryne, C. P. (2008) Identification of components of the Sigma B Regulon in Listeria monocytogenes that contribute to acid and salt tolerance. Applied and Environmental Microbiology, 74 (22). pp. 6848-6858. ISSN 0099-2240 doi: 10.1128/AEM.00442-08

Abram, F., Su, W.-L. , Wiedmann, M., Boor, K. J., Coote, P., Botting, C. , Karatzas, K.-A. and O'Byrne, C. P. (2008) Proteomic analyses of a Listeria monocytogenes mutant lacking σB identify new components of the σB regulon and highlight a role for σB in the utilization of glycerol. Applied and Environmental Microbiology, 74 (3). pp. 594-604. ISSN 0099-2240 doi: 10.1128/AEM.01921-07

Batchelor, M., Hopkins, K. L., Liebana, E., Slickers, P., Ehricht, R., Mafura, M., Aarestrup, F., Mevius, D., Clifton-Hadley, F. A., Woodward, M. J., Davies, R. H., Threlfall, E. J. and Anjum, M. F. (2008) Development of a miniaturised microarray-based assay for the rapid identification of antimicrobial resistance genes in Gram-negative bacteria. International Journal of Antimicrobial Agents, 31 (5). pp. 440-451. ISSN 0924-8579 doi: 10.1016/j.ijantimicag.2007.11.017

Boyle, F.G., Lien, E.L., Wrenn, J.M., Marsh, B.B., Anderson, W.I., Angelosanto, F.A. and McCartney, A.L. (2008) Safety evaluation of oligofructose: 13 Week rat study and in vitro mutagenicity. Food and Chemical Toxicology, 46 (9). pp. 3132-3139. ISSN 0278-6915 doi: 10.1016/j.fct.2008.06.079

Carter, B., Wu, G. H., Woodward, M. J. and Anjum, M. F. (2008) A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes. Bmc Genomics, 9. ISSN 1471-2164 doi: 10.1186/1471-2164-9-53

Cartman, S. T., La Ragione, R. M. and Woodward, M. J. (2008) Bacillus subtilis spores germinate in the chicken gastrointestinal tract. Applied and Environmental Microbiology, 74 (16). pp. 5254-5258. ISSN 0099-2240 doi: 10.1128/aem.00580-08

Claus, S. P., Tsang, T. M., Wang, Y., Cloarec, O., Skordi, E., Martin, F.-P., Rezzi, S., Ross, A., Kochhar, S., Holmes, E. and Nicholson, J. K. (2008) Systemic multicompartmental effects of the gut microbiome on mouse metabolic phenotypes. Molecular systems biology, 4 (219). ISSN 1744-4292 doi: 10.1038/msb.2008.56

Enne, V. I., Cassar, C., Sprigings, K., Woodward, M. J. and Bennett, P. M. (2008) A high prevalence of antimicrobial resistant Escherichia coli isolated from pigs and a low prevalence of antimicrobial resistant E-coli from cattle and sheep in Great Britain at slaughter. FEMS Microbiology Letters, 278 (2). pp. 193-199. ISSN 0378-1097 doi: 10.1111/j.1574-6968.2007.00991.x

Fearnley, C., Wakeley, P. R., Gallego-Beltran, J., Dalley, C., Williamson, S., Gaudie, C. and Woodward, M. J. (2008) The development of a real-time PCR to detect pathogenic Leptospira species in kidney tissue. Research in Veterinary Science, 85 (1). pp. 8-16. ISSN 0034-5288 doi: 10.1016/j.rvsc.2007.09.005

Foster, A. R., Otter, A., Barlow, A. M., Pearson, G. R., Woodward, M. J. and Higgins, R. J. (2008) Naturally occurring intestinal lesions in three alpacas (Vicugna pacos) caused by attaching and effacing Escherichia coli. Veterinary Record, 162 (10). pp. 318-320. ISSN 0042-4900

Girard, F., Frankel, G., Phillips, A. D., Cooley, W., Weyer, U., Dugdale, A. H. A., Woodward, M. J. and La Ragione, R. M. (2008) Interaction of enterohemorrhagic Escherichia coli O157 : H7 with mouse intestinal mucosa. FEMS Microbiology Letters, 283 (2). pp. 196-202. ISSN 0378-1097 doi: 10.1111/j.1574-6968.2008.01166.x

Gougoulias, C., Sandaradura, S., Meng, X., Perz, A. C., Leeds, A. R. and Thomas, L. V. (2008) Changes in the intestinal microbiota after a short period of dietary over-indulgence, representative of a holiday or festival season. Food Science and Technology Bulletin: Functional Foods, 5 (5). pp. 51-59. ISSN 1476-2137

Hemrajani, C., Marches, O., Wiles, S., Girard, F., Dennis, A., Dziva, F., Best, A., Phillips, A. D., Berger, C. N., Mousnier, A., Crepin, V. F., Kruidenier, L., Woodward, M. J., Stevens, M. P., La Ragione, R. M., MacDonald, T. T. and Frankel, G. (2008) Role of NleH, a Type III Secreted Effector from Attaching and Effacing Pathogens, in Colonization of the Bovine, Ovine, and Murine Gut. Infection and Immunity, 76 (11). pp. 4804-4813. ISSN 0019-9567 doi: 10.1128/iai.00742-08

Karatzas, K.-A. and O’Byrne, C. P. (2008) The role of sigma B (sB) in the stress adaptations of listeria monocytogenes: overlaps between stress adaptation and virulence. In: Laskin , A. I., Gadd , G. M. and Sariaslani , S. (eds.) Advances in Applied Microbiology. Academic Press, Elsevier, pp. 116-141. ISBN 9780123744296

Karatzas, K.-A. G., Hocking, P. M., Jørgensen, F., Mattick, K., Leach, S. and Humphrey, T. J. (2008) Effects of repeated cycles of acid challenge and growth on the phenotype and virulence of Salmonella enterica. Journal of Applied Microbiology, 105 (5). pp. 1640-1648. ISSN 1364-5072 doi: 10.1111/j.1365-2672.2008.03909.x

Karatzas, K.-A. G., Randall, L. P., Webber, M., Piddock, L. J. V., Humphrey, T. J., Woodward, M. J. and Coldham, N. G. (2008) Phenotypic and proteomic characterization of multiply antibiotic-resistant variants of Salmonella entetica serovar typhimurium selected following exposure to disinfectants. Applied and Environmental Microbiology, 74 (5). pp. 1508-1516. ISSN 0099-2240 doi: 10.1128/aem.01931-07

Lewis, M., Tarlton, J. F. and Cose, S. (2008) Memory versus naive T-cell migration. Immunology & Cell biology, 86 (3). pp. 226-231. ISSN 1440-1711 doi: 10.1038/sj.icb.7100132

Parracho, H.M.R.T., Saulnier, D.M., McCartney, A.L. and Gibson, G.R. (2008) Introduction to prebiotics. In: Versalovic, J. and Wilson, M. (eds.) Therapeutic microbiology: probiotics and other strategies. American Society for Microbiology Press, Washington, pp. 119-130. ISBN 9781555814038

Randall, L. P., Bagnall, M. C., Karatzas, K.-A., Coldham, N. C., Piddock, L. J. V. and Woodward, M. J. (2008) Fitness and dissemination of disinfectant-selected multiple-antibiotic-resistant (MAR) strains of Salmonella enterica serovar Typhimurium in chickens. Journal of Antimicrobial Chemotherapy, 61 (1). pp. 156-162. ISSN 0305-7453 doi: 10.1093/jac/dkm415

Reid, G., Gibson, G. R., Sanders, M. E., Guarner, F. and Versalovic, J. (2008) Probiotic prophylaxis in predicted severe acute pancreatitis. Lancet, 372 (9633). pp. 112-113. ISSN 0140-6736 doi: 10.1016/S0140-6736(08)61024-7

Webber, M. A., Coldham, N. G., Woodward, M. J. and Piddock, L. J. V. (2008) Proteomic analysis of triclosan resistance in Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 62 (1). pp. 92-97. ISSN 0305-7453 doi: 10.1093/jac/dkn138

Webber, M. A., Randall, L. P., Cooles, S., Woodward, M. J. and Piddock, L. J. V. (2008) Triclosan resistance in Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 62 (1). pp. 83-91. ISSN 0305-7453 doi: 10.1093/jac/dkn137

Wu, G. H., Carter, B., Mafura, M., Liebana, E., Woodward, M. J. and Anjum, M. F. (2008) Genetic diversity among Escherichia coli O157 : H7 isolates and identification of genes linked to human infections. Infection and Immunity, 76 (2). pp. 845-856. ISSN 0019-9567 doi: 10.1128/iai.00956-07

2007

Aktan, I., Carter, B., Wilking, H., La Ragione, R. M., Wieler, L., Woodward, M. J. and Anjum, M. F. (2007) Influence of geographical origin, host animal and stx gene on the virulence characteristics of Escherichia coli O26 strains. Journal of Medical Microbiology, 56 (11). pp. 1431-1439. ISSN 0022-2615 doi: 10.1099/jmm.0.47311-0

Aktan, I., Carter, B., Wilking, H., La Ragione, R. M., Woodward, M. J., Wieler, L. H. and Anjum, M. F. (2007) Escherichia coli O26 strains: influence of geography, host animal and stx gene on virulence characteristics. International Journal of Medical Microbiology, 297. p. 54. ISSN 1438-4221

Aktan, I., La Ragione, R. M. and Woodward, M. J. (2007) Colonization, persistence, and tissue tropism of Escherichia coli O26 in conventionally reared weaned lambs. Applied and Environmental Microbiology, 73 (3). pp. 691-698. ISSN 0099-2240 doi: 10.1128/aem.01879-06

Aktan, I., La Ragione, R. M., Pritchard, G. C. and Woodward, M. J. (2007) Prevalence of attaching and effacing Escherichia coli serogroup 0103 in orphan lambs on an open farm in eastern England. Veterinary Record, 161 (11). pp. 386-388. ISSN 0042-4900 doi: 10.1136/vr.161.11.386

Anium, M. F., Mafura, M., Slickers, P., Ballmer, K., Kuhnert, P., Woodward, M. J. and Ehricht, R. (2007) Pathotyping Escherichia coli by using miniaturized DNA microarrays. Applied and Environmental Microbiology, 73 (17). pp. 5692-5697. ISSN 0099-2240 doi: 10.1128/aem.00419-07

Cani, P., Neyrinck, A., Tuohy, K. M., Fava, F., Gibson, G. R., Knauf, C., Burcelin, R. and Delzenne, N. (2007) Fermentable carbohydrates reduce obesity and diabetes in mice fed a high fat diet. Annals of Nutrition and Metabolism, 51 (Suppl. 1). pp. 352-353. ISSN 0250-6807 doi: 10.1159/000105122 (special issue 'European Nutrition Conference')

Drakoularakou, A., Wells, A., Robinson, R.K., Rastall, B., Gibson, G. and McCartney, A. (2007) Acid and bile tolerance, adhesion properties and anti-pathogenic effects of three potential probiotic strains. International Journal of Probiotics and Prebiotics, 2 (4). pp. 185-194. ISSN 1555-1431 (Unpublished)

Inness, V.L., McCartney, A.L., Khoo, C., Gross, K.L. and Gibson, G.R. (2007) Molecular characterisation of the gut microflora of healthy and inflammatory bowel disease cats using fluorescence in situ hybridisation with special reference to Desulfovibrio spp. Journal of Animal Physiology and Animal Nutrition, 91 (1-2). pp. 48-53. ISSN 0931-2439 doi: 10.1111/j.1439-0396.2006.00640.x

Karatzas, K. A. G., Webber, M. A., Jorgensen, F., Woodward, M. J., Piddock, L. J. V. and Humphrey, T. J. (2007) Prolonged treatment of Salmonella enterica serovar Typhimurium with commercial disinfectants selects for multiple antibiotic resistance, increased efflux and reduced invasiveness. Journal of Antimicrobial Chemotherapy, 60 (5). pp. 947-955. ISSN 0305-7453 doi: 10.1093/jac/dkm314

Karatzas, K.-A., Zervos, A., Tassou, C. C., Mallidis, C. G. and Humphrey, T. J. (2007) Piezotolerant small-colony variants with increased thermotolerance, antibiotic susceptibility, and low invasiveness in a clonal Staphylococcus aureus population. Applied and Environmental Microbiology, 73 (6). pp. 1873-1881. ISSN 0099-2240 doi: 10.1128/AEM.01801-06

Parracho, H., McCartney, A.L. and Gibson, G.R. (2007) Probiotics and prebiotics in infant nutrition. Proceedings of the Nutrition Society, 66 (3). pp. 405-411. ISSN 0029-6651 doi: 10.1017/S0029665107005678

Pleydell, E. J., Brown, P. E., Woodward, M. J., Davies, R. H. and French, N. P. (2007) Sources of variation in the ampicillin-resistant Escherichia coli concentration in the feces of organic broiler chickens. Applied and Environmental Microbiology, 73 (1). pp. 203-210. ISSN 0099-2240 doi: 10.1128/aem.01482-06

Randall, L. P., Cooles, S. W., Coldham, N. G., Penuela, E. G., Mott, A. C., Woodward, M. J., Piddock, L. J. V. and Webber, M. A. (2007) Commonly used farm disinfectants can select for mutant Salmonella enterica serovar Typhimurium with decreased susceptibility to biocides and antibiotics without compromising virulence. Journal of Antimicrobial Chemotherapy, 60 (6). pp. 1273-1280. ISSN 0305-7453 doi: 10.1093/jac/dkm359

Sanders, M.E., Hamilton, J., Reid, G. and Gibson, G. R. (2007) A nonviable preparation of Lactobacillus acidophilus is not a probiotic. Clinical Infectious Diseases, 44 (6). p. 886. ISSN 1537-6591 doi: 10.1086/513887

Skordi, E., Yap, I. K.S., Claus, S. P., Martin, F.-P. J., Cloarec, O., Lindberg, J., Schuppe-Koistinen, I., Holmes, E. and Nicholson, J. K. (2007) Analysis of time-related metabolic fluctuations induced by ethionine in the rat. Journal of Proteome Research, 6 (12). pp. 4572-4581. ISSN 1535-3893 doi: 10.1021/pr070268q

Torres, A. G., Milflores-Flores, L., Garcia-Gallegos, J. G., Patel, S. D., Best, A., La Ragione, R. M., Martinez-Laguna, Y. and Woodward, M. J. (2007) Environmental regulation and colonization attributes of the long polar fimbriae (LPF) of Escherichia coli O157:H7. International Journal of Medical Microbiology, 297 (3). pp. 177-185. ISSN 1438-4221 doi: 10.1016/j.ijmm.2007.01.005

Tuohy, K.M., Pinart-Gilberga, M., Jones, M., Hoyles, L., McCartney, A.L. and Gibson, G.R. (2007) Survivability of a probiotic Lactobacillus casei in the gastrointestinal tract of healthy human volunteers and its impact on the faecal microflora. Journal of Applied Microbiology, 102 (4). pp. 1026-1032. ISSN 1364-5072 doi: 10.1111/j.1365-2672.2006.03154.x

2006

Anjum, M. F., Tucker, J. D., Sprigings, K. A., Woodward, M. J. and Ehricht, R. (2006) Use of miniaturized protein arrays for Escherichia coli O serotyping. Clinical and Vaccine Immunology, 13 (5). pp. 561-567. ISSN 1556-679X doi: 10.1128/cvi.13.5.561-567.2006

Best, A., La Ragione, R. M., Clifford, D., Cooley, W. A., Sayers, A. R. and Woodward, M. J. (2006) A comparison of Shiga-toxin negative Escherichia coli O157 aflagellate and intimin deficient mutants in porcine in vitro and in vivo models of infection. Veterinary Microbiology, 113 (1-2). pp. 63-72. ISSN 0378-1135 doi: 10.1016/j.vetmic.2005.10.033

Buckley, A. M., Webber, M. A., Cooles, S., Randall, L. P., La Ragione, R. M., Woodward, M. J. and Piddock, L. J. V. (2006) The AcrAB-TolC efflux system of Salmonella enterica serovar Typhimurium plays a role in pathogenesis. Cellular Microbiology, 8 (5). pp. 847-856. ISSN 1462-5814 doi: 10.1111/j.1462-5822.2005.00671.x

Coldham, N. G., Randall, L. P., Piddock, L. J. V. and Woodward, M. J. (2006) Effect of fluoroquinolone exposure on the proteome of Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 58 (6). pp. 1145-1153. ISSN 0305-7453 doi: 10.1093/jac/dkl413

Hudspith, B.N., Rouzard, G., Gibson, G. R., Rayment, N., Petrovska, L., Bruce, K., Sanderson, J.D. and Brostoff, J. (2006) Probiotic bacteria inhibit epithelial cell IL-8 production: role of toll-like receptor engagement. Gut, 55 (Suppl 2). a38-a38. ISSN 1468-3288 (British Society of Gastroenterology Annual Meeting, Birmingham, 20 to 23 March, 2006)

Kolida, S., Saulnier, D.M. and Gibson, G. (2006) Gastrointestinal microflora: probiotics. In: Advances in Applied Microbiology. Advances in Applied Microbiology, 59. Elsevier Academic Press Inc, San Diego, pp. 187-219. ISBN 9780123747884 doi: 10.1016/s0065-2164(06)59007-0

La Ragione, R. M., Best, A., Clifford, D., Weyer, U., Johnson, L., Marshall, R. N., Marshall, J., Cooley, W. A., Farrelly, S., Pearson, G. R. and Woodward, M. J. (2006) Influence of colostrum deprivation and concurrent Cryptosporidium parvum infection on the colonization and persistence of Escherichia coli O157:H7 in young lambs. Journal of Medical Microbiology, 55 (7). pp. 819-828. ISSN 0022-2615 doi: 10.1099/jmm.0.46469-0

La Ragione, R. M., Patel, S., Maddison, B., Woodward, M. J., Best, A., Whitelam, G. C. and Gough, K. C. (2006) Recombinant anti-EspA antibodies block Escherichia coli O157:H7-induced attaching and effacing lesions in vitro. Microbes and Infection, 8 (2). pp. 426-433. ISSN 1286-4579 doi: 10.1016/j.micinf.2005.07.009

McCartney, A. (2006) Enumeration and identification of mixed probiotic and lactic acid bacteria starter cultures. In: Tamine, A.Y. (ed.) Probiotic Dairy Products. Society of Dairy Technology. Blackwell Publishing, Oxford, pp. 98-119. ISBN 9781405121248 doi: 10.1002/9780470995785.ch5

McCartney, A.L. and Gibson, G.R. (2006) The normal microbiota of the human gastrointestinal tract: history of analysis, succession and dietary influences. In: Ouwehand, A.C. and Vaughan, E.E. (eds.) Gastrointestinal microbiology. Taylor & Francis Group, New York, pp. 51-73. ISBN 9780824726416

Randall, L. P., Cooles, S. W., Coldham, N. C., Stapleton, K. S., Piddock, L. J. V. and Woodward, M. J. (2006) Modification of enrofloxacin treatment regimens for poultry experimentally infected with Salmonella enterica serovar Typhimurium DT104 to minimize selection of resistance. Antimicrobial Agents and Chemotherapy, 50 (12). pp. 4030-4037. ISSN 1098-6596 doi: 10.1128/aac.00525-06

Tuohy, K.M. and McCartney, A.L. (2006) Molecular microbial ecology of the human gut. In: Gibson, G.R. and Rastall, R.A. (eds.) Prebiotics: development and application. John Wiley & Sons Ltd, Chichester, pp. 135-155. ISBN 9780470023136

Vlisidou, I., Dziva, F., La Ragione, R. M., Best, A., Garmendia, J., Hawes, P., Monaghan, P., Cawthraw, S. A., Frankel, G., Woodward, M. J. and Stevens, M. P. (2006) Role of intimin-Tir interactions and the Tir-cytoskeleton coupling protein in the colonization of calves and lambs by Escherichia coli O157:H7. Infection and Immunity, 74 (1). pp. 758-764. ISSN 0019-9567 doi: 10.1128/iai.74.1.758-764.2006

Webber, M., Buckley, A. M., Randall, L. P., Woodward, M. J. and Piddock, L. J. V. (2006) Overexpression of marA, soxS and acrB in veterinary isolates of Salmonella enterica rarely correlates with cyclohexane tolerance. Journal of Antimicrobial Chemotherapy, 57 (4). pp. 673-679. ISSN 0305-7453 doi: 10.1093/jac/dkl025

2005

Anjum, M. F., Marooney, C., Fookes, M., Baker, S., Dougan, G., Ivens, A. and Woodward, M. J. (2005) Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray. Infection and Immunity, 73 (12). pp. 7894-7905. ISSN 0019-9567 doi: 10.1128/iai.73.12.7894-7905.2005

Barbosa, T. M., Serra, C. R., La Ragione, R. M., Woodward, M. J. and Henriques, A. O. (2005) Screening for Bacillus isolates in the broiler gastrointestinal tract. Applied and Environmental Microbiology, 71 (2). pp. 968-978. ISSN 0099-2240 doi: 10.1128/aem.71.2.968-978.2005

Best, A., La Ragione, R. M., Sayers, A. R. and Woodward, M. J. (2005) Role for flagella but not intimin in the persistent infection of the gastrointestinal tissues of specific-pathogen-free chicks by Shiga toxin-negative Escherichia coli O157:H7. Infection and Immunity, 73 (3). pp. 1836-1846. ISSN 0019-9567 doi: 10.1128/iai.73.3.1836-1846.2005

Dahan, S., Wiles, S., La Ragione, R. M., Best, A., Woodward, M. J., Stevens, M. P., Shaw, R. K., Chong, Y., Knutton, S., Phillips, A. and Frankel, G. (2005) EspJ is a prophage-carried type III effector protein of attaching and effacing pathogens that modulates infection dynamics. Infection and Immunity, 73 (2). pp. 679-686. ISSN 0019-9567 doi: 10.1128/iai.73.2.679-686.2005

Delsol, A. A., Randall, L., Cooles, S., Woodward, M. J., Sunderland, J. and Roe, J. M. (2005) Effect of the growth promoter avilamycin on emergence and persistence of antimicrobial resistance in enteric bacteria in the pig. Journal of Applied Microbiology, 98 (3). pp. 564-571. ISSN 1364-5072 doi: 10.1111/j.1365-2672.2004.02461.x

Edwards, A. M., Jenkinson, H. F., Woodward, M. J. and Dymock, D. (2005) Binding properties and adhesion-mediating regions of the major sheath protein of Treponema denticola ATCC 35405. Infection and Immunity, 73 (5). pp. 2891-2898. ISSN 0019-9567 doi: 10.1128/iai.73.5.2891-2898.2005

Gibson, G.R., McCartney, A.L. and Rastall, R.A. (2005) Prebiotics and resistance to gastrointestinal infections. British Journal of Nutrition, 93 (S1). S31-S34. ISSN 0007-1145 doi: 10.1079/bjn20041343

Howells, L. C., Whelan, A. O., Woodward, M. J. and Coldham, N. G. (2005) Simple and effective technical procedures for the packing and application of nanospray PicoFrit HPLC columns for proteomic analyses. Proteomics, 5 (15). pp. 3864-3867. ISSN 1615-9853 doi: 10.1002/pmic.200401259

Karatzas, K. A. G., Valdramidis, V. P. and Wells-Bennik, M. H. J. (2005) Contingency locus in ctsR of Listeria monocytogenes Scott A: a strategy for occurrence of abundant piezotolerant isolates within clonal populations. Applied and Environmental Microbiology, 71 (12). pp. 8390-8396. ISSN 0099-2240 doi: 10.1128/AEM.71.12.8390-8396.2005

La Ragione, R. M., Ahmed, N. M. Y., Best, A., Clifford, D., Weyer, U. and Woodward, M. J. (2005) Failure to detect transmission of Escherichia coli O157:H7 from orally dosed nannies to sucking kids at foot. Veterinary Record, 157 (21). pp. 659-661. ISSN 0042-4900

La Ragione, R. M., Ahmed, N. M. Y., Best, A., Clifford, D., Weyer, U., Cooley, W. A., Johnson, L., Pearson, G. R. and Woodward, M. J. (2005) Colonization of 8-week-old conventionally reared goats by Escherichia coli O157:H7 after oral inoculation. Journal of Medical Microbiology, 54 (5). pp. 485-492. ISSN 0022-2615 doi: 10.1099/jmm.0.45897-0

La Ragione, R. M., Best, A., Sprigings, K., Liebana, E., Woodward, G. R., Sayers, A. R. and Woodward, M. J. (2005) Variable and strain dependent colonisation of chickens by Escherichia coli O157. Veterinary Microbiology, 107 (1-2). pp. 103-113. ISSN 0378-1135 doi: 10.1016/j.vetmic.2005.01.005

Marches, O., Wiles, S., Dziva, F., La Ragione, R. M., Schuller, S., Best, A., Phillips, A. D., Hartland, E. L., Woodward, M. J., Stevens, M. P. and Frankel, G. (2005) Characterization of two non-locus of enterocyte effacement-encoded type III-translocated effectors, NleC and NleD, in attaching and effacing pathogens. Infection and Immunity, 73 (12). pp. 8411-8417. ISSN 0019-9567 doi: 10.1128/iai.73.12.8411-8417.2005

Moore, L. J., Woodward, M. J. and Grogono-Thomas, R. (2005) The occurrence of treponemes in contagious ovine digital dermatitis and the characterisation of associated Dichelobacter nodosus. Veterinary Microbiology, 111 (3-4). pp. 199-209. ISSN 0378-1135 doi: 10.1016/j.vetmic.2005.10.016

O'Grady, B. and Gibson, G. R. (2005) Microbiata of the human gut. In: Tamine, A. (ed.) Probiotic Dairy Products. Blackwell Publishing, Oxford, pp. 1-15. ISBN 9781405121248

Parracho, H.M.R.T., Bingham, M.O., Gibson, G.R. and McCartney, A.L. (2005) Differences between the gut microflora of children with autistic spectrum disorders and that of healthy children. Journal of Medical Microbiology, 54 (10). pp. 987-991. ISSN 0022-2615 doi: 10.1099/jmm.0.46101-0

Pumbwe, L., Randall, L. P., Woodward, M. J. and Piddock, L. J. V. (2005) Evidence for multiple-antibiotic resistance in Campylobacter jejuni not mediated by CmeB or CmeF. Antimicrobial Agents and Chemotherapy, 49 (4). pp. 1289-1293. ISSN 1098-6596 doi: 10.1128/aac.49.4.1289-1293.2005

Randall, L. P., Clouting, C. S., Gradel, K. O., Clifton-Hadley, F. A., Davies, R. D. and Woodward, M. J. (2005) Farm disinfectants select for cyclohexane resistance, a marker of multiple antibiotic resistance, in Escherichia coli. Journal of Applied Microbiology, 98 (3). pp. 556-563. ISSN 1364-5072 doi: 10.1111/j.1365-2672.2004.02488.x

Randall, L. P., Coldham, N. G. and Woodward, M. J. (2005) Detection of mutations in Salmonella enterica gyrA, gyrB, parC and parE genes by denaturing high performance liquid chromatography (DHPLC) using standard HPLC instrumentation. Journal of Antimicrobial Chemotherapy, 56 (4). pp. 619-623. ISSN 0305-7453 doi: 10.1093/jac/dki293

Randall, L. P., Eaves, D. J., Cooles, S. W., Ricci, V., Buckley, A., Woodward, M. J. and Piddock, L. J. V. (2005) Fluoroquinolone treatment of experimental Salmonella enterica serovar Typhimurium DT104 infections in chickens selects for both gyrA mutations and changes in efflux pump gene expression. Journal of Antimicrobial Chemotherapy, 56 (2). pp. 297-306. ISSN 0305-7453 doi: 10.1093/jac/dki189

Roger, L. C. and McCartney, A. (2005) Prebiotics and the infant microflora. In: Tannock, G. W. (ed.) Probiotics and prebiotics: scientific aspects. Caister Academic Press, Wymondham, pp. 195-216. ISBN 1904455018

Wales, A. D., Pearson, G. R., Best, A., Cookson, A. L., La Ragione, R. M., Roe, J. M., Hayes, C. M. and Woodward, M. J. (2005) Naturally acquired attaching and effacing Escherichia coli in sheep. Research in Veterinary Science, 78 (2). pp. 109-115. ISSN 0034-5288 doi: 10.1016/j.rvsc.2004.07.002

Wales, A. D., Pearson, G. R., Roe, J. M., Hayes, C. M., La Ragione, R. M. and Woodward, M. J. (2005) Attaching-effacing lesions associated with Escherichia coli O157:H7 and other bacteria in experimentally infected conventional neonatal goats. Journal of Comparative Pathology, 132 (2-3). pp. 185-194. ISSN 0021-9975 doi: 10.1016/j.jcpa.2004.09.010

Wales, A. D., Woodward, M. J. and Pearson, G. R. (2005) Attaching-effacing bacteria in animals. Journal of Comparative Pathology, 132 (1). pp. 1-26. ISSN 0021-9975 doi: 10.1016/j.jcpa.2004.09.005

2004

Aktan, I., Sprigings, K. A., La Ragione, R. M., Faulkner, L. M., Paiba, G. A. and Woodward, M. J. (2004) Characterisation of attaching-effacing Escherichia coli isolated from animals at slaughter in England and Wales. Veterinary Microbiology, 102 (1-2). pp. 43-53. ISSN 0378-1135 doi: 10.1016/j.vetmic.2004.04.013

Barlow, A. M., Wales, A. D., Burch, A. A., La Ragione, R. M., Woodward, M. J. and Pearson, G. R. (2004) Attaching and effacing lesions in the intestines of an adult goat associated with natural infection with Escherichia coli O145. Veterinary Record, 155 (25). pp. 807-808. ISSN 0042-4900

Carroll, P., La Ragione, R. M., Sayers, A. R. and Woodward, M. J. (2004) The O-antigen of Salmonella enterica serotype Enteritidis PT4: a significant factor in gastrointestinal colonisation of young but not newly hatched chicks. Veterinary Microbiology, 102 (1-2). pp. 73-85. ISSN 0378-1135 doi: 10.1016/j.vetmic.2004.05.003

Cassar, C. A., Ottaway, M., Paiba, G. A., Futter, R., Newbould, S. and Woodward, M. J. (2004) Absence of enteroaggregative Escherichia coli in farmed animals in Great Britain. Veterinary Record, 154 (8). pp. 237-239. ISSN 0042-4900

Cogan, T. A., Jorgensen, F., Lappin-Scott, H. M., Benson, C. E., Woodward, M. J. and Humphrey, T. J. (2004) Flagella and curli fimbriae are important for the growth of Salmonella enterica serovars in hen eggs. Microbiology, 150 (4). pp. 1063-1071. ISSN 1465-2080 doi: 10.1099/mic.0.26791-0

Coldham, N. G. and Woodward, M. J. (2004) Characterization of the Salmonella typhimurium proteome by semi-automated two dimensional HPLC-mass spectrometry: detection of proteins implicated in multiple antibiotic resistance. Journal of Proteome Research, 3 (3). pp. 595-603. ISSN 1535-3893 doi: 10.1021/pr034129u

Delsol, A. A., Sunderland, J., Woodward, M. J., Pumbwe, L., Piddock, L. J. V. and Roe, J. M. (2004) Emergence of fluoroquinolone resistance in the native Campylobacter coli population of pigs exposed to enrofloxacin. Journal of Antimicrobial Chemotherapy, 53 (5). pp. 872-874. ISSN 0305-7453 doi: 10.1093/jac/dkh150

Delsol, A. A., Woodward, M. J. and Roe, J. M. (2004) Comment on 'Effect of a 5 day enrofloxacin treatment on Salmonella enterica serotype Typhimurium DT104 in the pig': reply. Journal of Antimicrobial Chemotherapy, 54 (3). pp. 693-694. ISSN 0305-7453 doi: 10.1093/jac/dkh400

Delsol, A. A., Woodward, M. J. and Roe, J. M. (2004) Effect of a 5 day enrofloxacin treatment on Salmonella enterica serotype Typhimurium DT104 in the pig. Journal of Antimicrobial Chemotherapy, 53 (2). pp. 396-398. ISSN 0305-7453 doi: 10.1093/jac/dkh038

Drakoularakou, A., McCartney, A., Rastall, R. and Gibson, G.R. (2004) Established and emerging prebiotics and their effects on the gut microflora. Agro Food Industry Hi-Tech, 15 (5). pp. 18-20. ISSN 1722-6996

Eaves, D. J., Randall, L., Gray, D. T., Buckley, A., Woodward, M. J., White, A. P. and Piddock, L. J. V. (2004) Prevalence of mutations within the quinolone resistance-determining region of gyrA, gyrB, parC, and parE and association with antibiotic resistance in quinolone-resistant Salmonella enterica. Antimicrobial Agents and Chemotherapy, 48 (10). pp. 4012-4015. ISSN 1098-6596 doi: 10.1128/aac.48.10.4012-4015.2004

Hoyles, L., Collins, M.D., Falsenz, E., Nikolaitchouk, N. and McCartney, A.L. (2004) Transfer of members of the genus Falcivibrio to the genus Mobiluncus, and emended description of the genus Mobiluncus. Systematic and Applied Microbiology, 27 (1). pp. 72-83. ISSN 0723-2020 doi: 10.1078/0723-2020-00260

Humphreys, S., Rowley, G., Stevenson, A., Anjum, M. F., Woodward, M. J., Gilbert, S., Kormanec, J. and Roberts, M. (2004) Role of the two-component regulator CpxAR in the virulence of Salmonella entetica serotype typhimurium. Infection and Immunity, 72 (8). pp. 4654-4661. ISSN 0019-9567 doi: 10.1128/iai.72.8.4654-4661.2004

Kuhne, S. A., Hawes, W. S., La Ragione, R. M., Woodward, M. J., Whitelam, G. C. and Gough, K. C. (2004) Isolation of recombinant antibodies against EspA and intimin of Escherichia coli O157:H7. Journal of Clinical Microbiology, 42 (7). pp. 2966-2976. ISSN 0095-1137 doi: 10.1128/jcm.42.7.2966-2976.2004

La Ragione, R. M., Best, A., Sprigings, K. A., Cooley, W. A., Jepson, M. A. and Woodward, M. J. (2004) Interaction between attaching and effacing Escherichia coli serotypes O157:H7 and O26:K60 in cell culture. Veterinary Microbiology, 104 (1-2). pp. 119-124. ISSN 0378-1135 doi: 10.1016/j.vetmic.2004.08.002

La Ragione, R. M., Narbad, A., Gasson, M. J. and Woodward, M. J. (2004) In vivo characterization of Lactobacillus johnsonii FI9785 for use as a defined competitive exclusion agent against bacterial pathogens in poultry. Letters in Applied Microbiology, 38 (3). pp. 197-205. ISSN 0266-8254 doi: 10.1111/j.1472-765X.2004.01474.x

Manning, T. and Gibson, G. R. (2004) Prebiotics and lactic acid bacteria. In: Salminen, S. (ed.) Lactic Acid Bacteria. Marcel Dekker, New York.

Pumbwe, L., Randall, L. P., Woodward, M. J. and Piddock, L. J. V. (2004) Expression of the efflux pump genes cmeB, cmeF and the porin gene porA in multiple-antibiotic-resistant Campylobacter jejuni. Journal of Antimicrobial Chemotherapy, 54 (2). pp. 341-347. ISSN 0305-7453 doi: 10.1093/jac/dkh331

Randall, L. P., Cooles, S. W., Osborn, M. K., Piddock, L. J. V. and Woodward, M. J. (2004) Antibiotic resistance genes, integrons and multiple antibiotic resistance in thirty-five serotypes of Salmonella enterica isolated from humans and animals in the UK. Journal of Antimicrobial Chemotherapy, 53 (2). pp. 208-216. ISSN 0305-7453 doi: 10.1093/jac/dkh070

Randall, L. P., Cooles, S. W., Piddock, L. J. V. and Woodward, M. J. (2004) Effect of triclosan or a phenolic farm disinfectant on the selection of antibiotic-resistant Salmonella enterica. Journal of Antimicrobial Chemotherapy, 54 (3). pp. 621-627. ISSN 0305-7453 doi: 10.1093/jac/dkh376

Randall, L. P., Cooles, S. W., Piddock, L. J. V. and Woodward, M. J. (2004) Mutant prevention concentrations of ciprofloxacin and enrofloxacin for Salmonella enterica. Journal of Antimicrobial Chemotherapy, 54 (3). pp. 688-691. ISSN 0305-7453 doi: 10.1093/jac/dkh360

Roe, A. J., Naylor, S. W., Spears, K. J., Yull, H. M., Dransfield, T. A., Oxford, M., McKendrick, I. J., Porter, M., Woodward, M. J., Smith, D. G. E. and Gally, D. L. (2004) Co-ordinate single-cell expression of LEE4- and LEE5-encoded proteins of Escherichia coli O157:H7. Molecular Microbiology, 54 (2). pp. 337-352. ISSN 0950-382X doi: 10.1111/j.1365-2958.2004.04277.x

Rouzard, G.C.M. and Gibson, G. R. (2004) Probiotics, prebiotics and synbiotics: functional ingredients for microbial management strategies. In: Biliarderis , C.G. and Izydorczyk, M. (eds.) Functional Food Carbohydrates. Functional Foods and Nutraceuticals. CRC Press, London, pp. 479-510. ISBN 9780849318221

Salminen, S., Gibson, G., McCartney, A. and Isolauri, E. (2004) Influence of mode of delivery on gut microbiota composition in seven year old children. Gut, 53 (9). pp. 1388-1389. ISSN 1468-3288 doi: 10.1136/gut.2004.041640

Stevens, M. P., Roe, A. J., Vlisidou, I., van Diemen, P. M., La Ragione, R. M., Best, A., Woodward, M. J., Gally, D. L. and Wallis, T. S. (2004) Mutation of toxB and a truncated version of the efa-1 gene in Escherichia coli O157 : H7 influences the expression and secretion of locus of enterocyte effacement-encoded proteins but not intestinal colonization in calves or sheep. Infection and Immunity, 72 (9). pp. 5402-5411. ISSN 0019-9567 doi: 10.1128/iai.72.9.5402-5411.2004

Thomson, N., Baker, S., Pickard, D., Fookes, M., Anjum, M., Hamlin, N., Wain, J., House, D., Bhutta, Z., Chan, K., Falkow, S., Parkhill, J., Woodward, M. J., Ivens, A. and Dougan, G. (2004) The role of prophage-like elements in the diversity of Salmonella enterica serovars. Journal of Molecular Biology, 339 (2). pp. 279-300. ISSN 0022-2836 doi: 10.1016/j.jmb.2004.03.058

Vulevic, J., McCartney, A.L., Gee, J.M., Johnson, I.T. and Gibson, G.R. (2004) Microbial species involved in production of 1,2-sn-diacylglycerol and effects of phosphatidylcholine on human fecal microbiota. Applied and Environmental Microbiology, 70 (9). pp. 5659-5666. ISSN 0099-2240 doi: 10.1128/aem.70.9.5659-5666.2004

Wynne, A.G., McCartney, A.L., Brostoff, J., Hudspith, B.N. and Gibson, G.R. (2004) An in vitro assessment of the effects of broad-spectrum antibiotics on the human gut microflora and concomitant isolation of a Lactobacillus plantarum with anti-Candida activities. Anaerobe, 10 (3). pp. 165-169. ISSN 1075-9964 doi: 10.1016/j.anaerobe.2004.03.002

2003

Abdallah, A. I., Commander, N. J., Woodward, M. J., Spencer, S., Hart, C. A. and Winstanley, C. (2003) Type III secretion homologs are present in Brucella melitensis, B-ovis, and B-suis biovars 1, 2, and 3. Current Microbiology, 46 (4). pp. 241-245. ISSN 0343-8651 doi: 10.1007/s00284-002-3789-3

Anjum, M. F., Lucchini, S., Thompson, A., Hinton, J. C. D. and Woodward, M. J. (2003) Comparative genomic indexing reveals the phylogenomics of Escherichia coli pathogens. Infection and Immunity, 71 (8). pp. 4674-4683. ISSN 0019-9567 doi: 10.1128/iai.71.8.4674-4683.2003

Best, A., La Ragione, R. M., Cooley, W. A., O'Connor, C. D., Velge, P. and Woodward, M. J. (2003) Interaction with avian cells and colonisation of specific pathogen free chicks by Shiga-toxin negative Escherichia coli O157:H7 (NCTC 12900). Veterinary Microbiology, 93 (3). pp. 207-222. ISSN 0378-1135 doi: 10.1016/s0378-1135(03)00031-2

Burriel, A. R., Dalley, C. and Woodward, M. J. (2003) Prevalence of Leptospira species among farmed and domestic animals in Greece. Veterinary Record, 153 (5). pp. 146-148. ISSN 0042-4900 doi: 10.1136/vr.153.5.146

Cookson, A. L. and Woodward, M. J. (2003) The role of intimin in the adherence of enterohaemorrhagic Escherichia coli (EHEC) O157:H7 to HEp-2 tissue culture cells and to bovine gut explant tissues. International Journal of Medical Microbiology, 292 (7-8). pp. 547-553. ISSN 1438-4221 doi: 10.1078/1438-4221-00235

D'Altero, G. L., Bazeley, K. J., Pearson, G. R., Jones, J. R., Jose, M. and Woodward, M. J. (2003) Meningitis associated with Salmonella Newport in a neonatal alpaca (Lama pacos) in the United Kingdom. Veterinary Record, 152 (2). pp. 56-57. ISSN 0042-4900

Delsol, A. A., Anjum, M., Woodward, M. J., Sunderland, J. and Roe, J. M. (2003) The effect of chlortetracycline treatment and its subsequent withdrawal on multi-resistant Salmonella enterica serovar Typhimurium DT104 and commensal Escherichia coli in the pig. Journal of Applied Microbiology, 95 (6). pp. 1226-1234. ISSN 1364-5072 doi: 10.1046/j.1365-2672.2003.02088.x

Edwards, A. M., Dymock, D., Woodward, M. J. and Jenkinson, H. F. (2003) Genetic relatedness and phenotypic characteristics of Treponema associated with human periodontal tissues and ruminant foot disease. Microbiology, 149. pp. 1083-1093. ISSN 1465-2080 doi: 10.1099/mic.0.26111-0

Gibson, G. and Rastall, B. (2003) Gastrointestinal pathogenesis and the protective role of probiotics and prebiotics. Food Science and Technology Bulletin: Functional Foods, 1 (2). pp. 1-17. ISSN 1476-2137

Gibson, G. R. (2003) Probiotics and prebiotics for improved gut health. In: Carr, T. and Descheemaeker, K. (eds.) Nutrition and Health: Current Topics. Garant, Antwerp, Belgium, pp. 131-134. ISBN 904411493X

Gibson, G. R., Rastall, R. A. and Fuller, R. (2003) Health benefits of probiotics and prebiotics. In: Fuller, R. and Perdigon, G. (eds.) Gut flora, nutrition, immunity and health. Blackwell Publishing, Oxford, pp. 52-76. ISBN 9781405100007

Grant, A. J., Farris, M., Alefounder, P., Williams, P. H., Woodward, M. J. and O'Connor, C. D. (2003) Co-ordination of pathogenicity island expression by the BipA GTPase in enteropathogenic Escherichia coli (EPEC). Molecular Microbiology, 48 (2). pp. 507-521. ISSN 0950-382X doi: 10.1046/j.1365-2958.2003.t01-1-03447.x

Hamilton-Miller, J.M., Gibson, G. R. and Bruck, W.M. (2003) Some insights into the derivation and early uses of the word ‘probiotic'. British Journal of Nutrition, 90 (4). p. 845. ISSN 0007-1145 doi: 10.1079/BJN2003954

Karatzas, K.-A., Wouters, J. A., Gahan, C. G. M. , Hill, C. , Tjakko, A. and Bennik, M. H. J. (2003) The CtsR regulator of Listeria monocytogenes contains a variant glycine repeat region that affects piezotolerance, stress resistance, motility and virulence. Molecular Microbiology, 49 (5). pp. 1227-1238. ISSN 0950-382X doi: 10.1046/j.1365-2958.2003.03636.x

La Ragione, R. M. and Woodward, M. J. (2003) Competitive exclusion by Bacillus subtilis spores of Salmonella enterica serotype Enteritidis and Clostridium perfringens in young chickens. Veterinary Microbiology, 94 (3). pp. 245-256. ISSN 0378-1135 doi: 10.1016/s0378-1135(03)00077-4

La Ragione, R. M., Cooley, W. A., Velge, P., Jepson, M. A. and Woodward, M. J. (2003) Membrane ruffling and invasion of human and avian cell lines is reduced for aflagellate mutants of Salmonella enterica serotype Enteritidis. International Journal of Medical Microbiology, 293 (4). pp. 261-272. ISSN 1438-4221 doi: 10.1078/1438-4221-00263

McCartney, A.L. (2003) Bifidobacteria In foods. In: Caballero, B., Trugo, L. and Finglas, P.M. (eds.) Encyclopedia of food sciences and nutrition. Academic Press, London, pp. 463-470. ISBN 9780122270550

Mueller-Harvey, I. (2003) Review of modern analytical techniques in feed analysis. In: Assessing Quality and Safety of Animal Feeds. FAO Animal Production and Health Papers (160). FAO, pp. 1-39. ISBN 9789251050460

Pereira, D.I.A., McCartney, A.L. and Gibson, G.R. (2003) An in vitro study of the probiotic potential of a bile-salt-hydrolyzing Lactobacillus fermentum strain, and determination of its cholesterol-lowering properties. Applied and Environmental Microbiology, 69 (8). pp. 4743-4752. ISSN 0099-2240 doi: 10.1128/aem.69.8.4743-4752.2003

Randall, L. P., Ridley, A. M., Cooles, S. W., Sharma, M., Sayers, A. R., Pumbwe, L., Newell, D. G., Piddock, L. J. V. and Woodward, M. J. (2003) Prevalence of multiple antibiotic resistance in 443 Campylobacter spp. isolated from humans and animals. Journal of Antimicrobial Chemotherapy, 52 (3). pp. 507-510. ISSN 0305-7453 doi: 10.1093/jac/dkg379

Robertson, J. M. C., McKenzie, N. H., Duncan, M., Allen-Vercoe, E., Woodward, M. J., Flint, H. J. and Grant, G. (2003) Lack of flagella disadvantages Salmonella enterica serovar Enteritidis during the early stages of infection in the rat. Journal of Medical Microbiology, 52 (1). pp. 91-99. ISSN 0022-2615 doi: 10.1099/jmm.0.04901-0

Roe, A. J., Yull, H., Naylor, S. W., Woodward, M. J., Smith, D. G. E. and Gally, D. L. (2003) Heterogeneous surface expression of EspA translocon filaments by Escherichia coli O157:H7 is controlled at the posttranscriptional level. Infection and Immunity, 71 (10). pp. 5900-5909. ISSN 0019-9567 doi: 10.1128/iai.71.10.5900-5909.2003

Smejkal, C., Kolida, S., Bingham, M., Gibson, G. and McCartney, A. (2003) Probiotics and prebiotics in female health. Menopause International, 9 (2). pp. 69-74. ISSN 1754-0453 doi: 10.1258/136218003100322224

Woodward, M. J., Best, A., Sprigings, K. A., Pearson, G. R., Skuse, A. M., Wales, A., Hayes, C. M., Roe, J. M., Low, J. C. and La Ragione, R. M. (2003) Non-toxigenic Escherichia coli O157:H7 strain NCTC12900 causes attaching-effacing lesions and eae-dependent persistence in weaned sheep. International Journal of Medical Microbiology, 293 (4). pp. 299-308. ISSN 1438-4221 doi: 10.1078/1438-4221-00264

2002

Avery, S. M., Liebana, E., Reid, C. A., Woodward, M. J. and Buncic, S. (2002) Combined use of two genetic fingerprinting methods, pulsed-field gel electrophoresis and ribotyping, for characterization of Escherichia coli O157 isolates from food animals, retail meats, and cases of human disease. Journal of Clinical Microbiology, 40 (8). pp. 2806-2812. ISSN 0095-1137 doi: 10.1128/jcm.40.8.2806-2812.2002

Bingham, M. and Gibson, G. (2002) A gut feeling about autism. The Autism File , 10. pp. 25-28.

Bonnet, R., Suau, A., Dore, J., Gibson, G. R. and Collins, M.D. (2002) Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs. International Journal of Systematic and Evolutionary Microbiology, 52. pp. 757-763. ISSN 1466-5034 doi: 10.1099/ijs.0.01755-0

Brück, W.M., Graverholt, G. and Gibson, G. (2002) Use of batch culture and a two-stage continuous culture system to study the effect of supplemental a-lactalbumin and glycomacropeptide on mixed populations of human gut bacteria. FEMS Microbiology Ecology, 41 (3). pp. 231-237. ISSN 1574-6941 doi: 10.1016/S0168-6496(02)00296-9

Brück, W.M., Kelleher, S.L., Lönnerdal, B., Nielsen, K.E., Chatterton, D. and Gibson, G. (2002) Fermentation studies on selected infant milk components using in vitro models of the human gut and rhesus monkeys. Journal of Paediatric Research, 37. pp. 273-280.

Clifton-Hadley, F. A., Breslin, M., Venables, L. M., Sprigings, K. A., Cooles, S. W., Houghton, S. and Woodward, M. J. (2002) A laboratory study of an inactivated bivalent iron restricted Salmonella enterica serovars Enteritidis and Typhimurium dual vaccine against Typhimurium challenge in chickens. Veterinary Microbiology, 89 (2-3). pp. 167-179. ISSN 0378-1135 doi: 10.1016/s0378-1135(02)00169-4

Collins, M. D., Hoyles, L., Foster, G., Falsen, E. and Weiss, N. (2002) Arthrobacter nasiphocae sp. nov., from the common seal (Phoca vitulina). International Journal of Systematic and Evolutionary Microbiology, 52 (2). pp. 569-571. ISSN 1466-5034

Cookson, A. L., Cooley, W. A. and Woodward, M. J. (2002) The role of type 1 and curli fimbriae of Shiga toxin-producing Escherichia coli in adherence to abiotic surfaces. International Journal of Medical Microbiology, 292 (3-4). pp. 195-205. ISSN 1438-4221 doi: 10.1078/1438-4221-00203

Cookson, A. L., Hayes, C. M., Pearson, G. R., Roe, J. M., Wales, A. D. and Woodward, M. J. (2002) Isolation from a sheep of an attaching and effacing Escherichia coli O115:H- with a novel combination of virulence factors. Journal of Medical Microbiology, 51 (12). pp. 1041-1049. ISSN 0022-2615

Cookson, A. L., Wales, A. D., Roe, J. M., Hayes, C. M., Pearson, G. R. and Woodward, M. J. (2002) Variation in the persistence of Escherichia coli O157:H7 in experimentally inoculated 6-week-old conventional lambs. Journal of Medical Microbiology, 51 (12). pp. 1032-1040. ISSN 0022-2615

Eaves, D. J., Liebana, E., Woodward, M. J. and Piddock, L. J. V. (2002) Detection of gyrA mutations in quinolone-resistant Salmonella enterica by denaturing high-performance liquid chromatography. Journal of Clinical Microbiology, 40 (11). pp. 4121-4125. ISSN 0095-1137 doi: 10.1128/jcm.40.11.4121-4125.2002

Fooks, L.J. and Gibson, G. R. (2002) In vitro investigations of the effect of selected probiotics and prebiotics on human intestinal pathogens. FEMS Microbiology Ecology, 39 (1). pp. 67-75. ISSN 1574-6941 doi: 10.1111/j.1574-6941.2002.tb00907.x

Fooks, L.J. and Gibson, G. R. (2002) Probiotics as modulators of the gut flora. British Journal of Nutrition, 88. S39-S49. ISSN 0007-1145 doi: 10.1079/BJN2002628 (supplement 1)

Gibson, G. (2002) Human microbiology: the end of the food chain or the start of good health? SGM Microbiology Today, 29. pp. 4-6.

Gibson, G. (2002) Intestinal flora research for the 21st century. Bioscience Microflora, 20. pp. 131-134.

Gibson, G. (2002) Management of the human gut flora for improved health. In: Carr, T. and Descheemaeker, K. (eds.) Nutrition and Health. Blackwell Science, Oxford, pp. 117-120.

Gibson, G., Rabiu, B., Rycroft, C.E. and Rastall, R.A. (2002) Trans-galactooligosaccharides as prebiotics. In: Shortt, C. and O’Brien, J. (eds.) Handbook of Functional Dairy Products. CRC Press, Boca Raton, pp. 91-108.

Greetham, H. L., Giffard, C., Hutson, R.A., Collins, M.D. and Gibson, G. R. (2002) Bacteriology of the Labrador dog gut: a cultural and genotypic approach. Journal of Applied Microbiology, 93 (4). pp. 640-646. ISSN 1364-5072 doi: 10.1046/j.1365-2672.2002.01724.x

Hoyles, L., Falsen, E., Foster, G. and Collins, M. D. (2002) Actinomyces coleocanis sp. nov., from the vagina of a dog. International Journal of Systematic and Evolutionary Microbiology, 52 (4). pp. 1201-1203. ISSN 1466-5034 doi: 10.1099/ijs.0.01934-0

Hoyles, L., Falsen, E., Foster, G., Rogerson, F. and Collins, M. D. (2002) Arcanobacterium hippocoleae sp. nov., from the vagina of a horse. International Journal of Systematic and Evolutionary Microbiology, 52 (2). pp. 617-619. ISSN 1466-5034

Hoyles, L., Inganäs, E., Falsen, E., Drancourt, M., Weiss, N., McCartney, A. L. and Collins, M. D. (2002) Bifidobacterium scardovii sp. nov., from human sources. International Journal of Systematic and Evolutionary Microbiology, 52 (3). pp. 995-999. ISSN 1466-5034 doi: 10.1099/ijs.0.02065-0

Karatzas, K. A. G. and Bennik, M. H. J. (2002) Characterization of a Listeria monocytogenes Scott A isolate with high tolerance towards high hydrostatic pressure. Applied and Environmental Microbiology, 68 (7). pp. 3183-3189. ISSN 0099-2240 doi: 10.1128/AEM.68.7.3183–3189.2002

Kilian, S., Kritzinger, S., Rycroft, C., Gibson, G. and James , d. P. (2002) The effect of the novel bifidogenic trisaccharide, neokestose, on the human colonic microbiota. World Journal of Microbiology and Biotechnology, 18 (7). pp. 637-644. ISSN 0959-3993 doi: 10.1023/A:1016808015630

Kolida, S., Tuohy, K. and Gibson, G. R. (2002) Prebiotic effects of inulin and oligofructose. British Journal of Nutrition, 87. S193-S197. ISSN 0007-1145 doi: 10.1079/BJN/2002537 (supplement S2)

La Ragione, R. M. and Woodward, M. J. (2002) Virulence factors of Escherichia coli serotypes associated with avian colisepticaemia. Research in Veterinary Science, 73 (1). pp. 27-35. ISSN 0034-5288 doi: 10.1016/s0034-5288(02)00075-9

La Ragione, R. M., McLaren, I. M., Foster, G., Cooley, W. A. and Woodward, M. J. (2002) Phenotypic and genotypic characterization of avian Escherichia coli O86:K61 isolates possessing a gamma-like intimin. Applied and Environmental Microbiology, 68 (10). pp. 4932-4942. ISSN 0099-2240 doi: 10.1128/aem.68.10.4932-4942.2002

Mattila-Sandholm, T., Blaut, M., Daly, C., De Vuyst, L., Gibson, G., Goosens, H., Knorr, D., Lucas, J., Lahteenmaki, L., Mercenier, A., Saarela, M., Shanahan, F. and de Vos, W.M. (2002) Food, GI-tract functionality and human health cluster: ProEUHealth. Microbial Ecology in Health and Disease, 14 (2). pp. 65-74. ISSN 1651-2235 doi: 10.1080/08910600260081702

McCartney, A. L. (2002) Application of molecular biological methods for studying probiotics and the gut flora. British Journal of Nutrition, 88. s29-s37. ISSN 1475-2662 doi: 10.1079/BJN2002627

Mountzouris, K. C., McCartney, A. L. and Gibson, G. R. (2002) Intestinal microflora of human infants and current trends for its nutritional modulation. British Journal of Nutrition, 87 (5). pp. 405-420. ISSN 1475-2662 doi: 10.1079/BJN2002563

Olano-Martin, E., Gibson, G. R. and Rastall, R.A. (2002) Comparison of the in vitro bifidogenic properties of pectins and pectic-oligosaccharides. Journal of Applied Microbiology, 93 (3). pp. 505-511. ISSN 1364-5072 doi: 10.1046/j.1365-2672.2002.01719.x

Pereira, D.I. and Gibson, G. R. (2002) Cholesterol assimilation by lactic acid bacteria and bifidobacteria isolated from the human gut. Applied and Environmental Microbiology, 68 (9). pp. 4689-4693. ISSN 0099-2240 doi: 10.1128/AEM.68.9.4689-4693.2002

Pereira, D.I. and Gibson, G. R. (2002) Effect of consumption of probiotics and prebiotics on serum lipid levels in humans. Critical Reviews in Biochemistry and Molecular Biology, 37 (4). pp. 259-281. ISSN 1040-9238 doi: 10.1080/10409230290771519

Probert, H.M. and Gibson, G. R. (2002) Investigating the prebiotic and gas-generating effects of selected carbohydrates on the human colonic microflora. Letters in Applied Microbiology, 35 (6). pp. 473-480. ISSN 0266-8254 doi: 10.1046/j.1472-765X.2002.01223.x

Rabiu, B. A. and Gibson, G. R. (2002) Carbohydrates: a limit on bacterial diversity within the colon. Biological Reviews, 77 (3). pp. 443-453. doi: 10.1017/S1464793102005961

Randall, L. P. and Woodward, M. J. (2002) The multiple antibiotic resistance (mar) locus and its significance. Research in Veterinary Science, 72 (2). pp. 87-93. ISSN 0034-5288 doi: 10.1053/rvsc.2001.0537

Rastall, B. and Gibson, G. (2002) Prebiotic oligosaccharides: evaluation of biological activities and potential future developments. In: Tannock, G. W. (ed.) Probiotics and Prebiotics. Caister Academic Press, Wymondham, Norfolk, pp. 107-148. ISBN 9780954246419

Steer, T.E. and Gibson, G. (2002) The microbiology of phytic acid metabolism by gut bacteria and relevance for bowel cancer. International Journal of Food Science and Technology, 37 (7). pp. 783-790. ISSN 1365-2621 doi: 10.1046/j.1365-2621.2002.00616.x

Tuohy, K.M., Ziemer, C.J., Klinder, A., Knobel, Y., Pool-Zobel, B.L. and Gibson, G. R. (2002) A human volunteer study to determine the prebiotic effects of lactulose powder on human colonic microbiota. Microbial Ecology in Health and Disease, 14 (3). pp. 165-173. ISSN 1651-2235 doi: 10.1080/089106002320644357

Wales, A.D., Clifton-Hadley, F.A., Cookson, A.L., Dibb-Fuller, M.P., Laragione, R.M., Pearson, G.R. and Woodward, M.J. (2002) Production of attaching-effacing lesions in ligated large intestine loops of 6-month-old sheep by Escherichia coli O157:H7. Journal of Medical Microbiology, 51 (9). pp. 755-763. ISSN 0022-2615

Wemekamp-Kamphuis, H. H., Karatzas, A. K., Wouters, J. A. and Abee, T. (2002) Enhanced levels of cold shock proteins in Listeria monocytogenes LO28 upon exposure to low temperature and high hydrostatic pressure. Applied and Environmental Microbiology, 68 (2). pp. 456-463. ISSN 0099-2240 doi: 10.1128/​AEM.68.2.456-463.2002

Woodward, M. J., Gettinby, G., Breslin, M. F., Corkish, J. D. and Houghton, S. (2002) The efficacy of Salenvac, a Salmonella enterica subsp. Enterica serotype Enteritidis iron-restricted bacterin vaccine, in laying chickens. Avian Pathology, 31 (4). pp. 383-392. ISSN 0307-9457 doi: 10.1080/03079450220141660

2001

Apostolou, E., Pelto, L., Kirjavainen, P.V., Isolauri, E., Salminen, S.J. and Gibson, G. R. (2001) Differences in the gut bacterial flora of healthy and milk-hypersensitive adults, as measured by fluorescence in situ hybridization. FEMS Immunology and Medical Microbiology, 30 (3). pp. 217-221. ISSN 0928-8244 doi: 10.1016/S0928-8244(01)00222-X

Cogan, T. A., Domingue, G., Lappin-Scott, H. M., Benson, C. E., Woodward, M. J. and Humphrey, T. J. (2001) Growth of Salmonella enteritidis in artificially contaminated eggs: the effects of inoculum size and suspending media. International Journal of Food Microbiology, 70 (1-2). pp. 131-141. ISSN 0168-1605 doi: 10.1016/s0168-1605(01)00540-2

Collighan, R. J. and Woodward, M. J. (2001) The SEF14 fimbrial antigen of Salmonella enterica serovar Enteritidis is encoded within a pathogenicity islet. Veterinary Microbiology, 80 (3). pp. 235-245. ISSN 0378-1135 doi: 10.1016/s0378-1135(01)00309-1

Collins, M. D., Hoyles, L., Foster, G., Sjödén, B. and Falsen, E. (2001) Corynebacterium capitovis sp. nov., from a sheep. International Journal of Systematic and Evolutionary Microbiology, 51 (3). pp. 857-860. ISSN 1466-5034

Collins, M. D., Hoyles, L., Hutson, R. A., Foster, G. and Falsen, E. (2001) Corynebacterium testudinoris sp. nov., from a tortoise, and Corynebacterium felinum sp. nov., from a Scottish wild cat. International Journal of Systematic and Evolutionary Microbiology, 51 (4). pp. 1349-1352. ISSN 1466-5034

Collins, M. D., Hoyles, L., Tornqvist, E., von Essen, R. and Falsen, E. (2001) Characterization of some strains from human clinical sources which resemble “Leptotrichia sanguinegens”: description of Sneathia sanguinegens sp. nov., gen. nov. Systematic and Applied Microbiology, 24 (3). pp. 358-361. ISSN 0723-2020 doi: 10.1078/0723-2020-00047

Collins, M. D., Hutson, R. A., Hoyles, L., Falsen, E., Nikolaitchouk, N. and Foster, G. (2001) Streptococcus ovis sp. nov., isolated from sheep. International Journal of Systematic and Evolutionary Microbiology, 51 (3). pp. 1147-1150. ISSN 1466-5034

Couteau, D., McCartney, A. L., Gibson, G. R., Williamson, G. and Faulds, C. B. (2001) Isolation and characterization of human colonic bacteria able to hydrolyse chlorogenic acid. Journal of Applied Microbiology, 90 (6). pp. 873-881. ISSN 1365-2672 doi: 10.1046/j.1365-2672.2001.01316.x

Cutler, S. J. and Woodward, M. J. (2001) Lyme borreliosis in the UK: ecology and risks to domestic animals and man. Reviews in Medical Microbiology, 12 (4). pp. 199-209. ISSN 0954-139X

Dibb-Fuller, M. P., Best, A., Stagg, D. A., Cooley, W. A. and Woodward, M. J. (2001) An in-vitro model for studying the interaction of Escherichia coli O157:H7 and other enteropathogens with bovine primary cell cultures. Journal of Medical Microbiology, 50 (9). pp. 759-769. ISSN 0022-2615

Gibson, G. (2001) Nutritional modulation of the gut flora using prebiotics. In: Roy, D. (ed.) Probiotics and Health, The Intestinal Microflora. Bibliotheque Nationale du Quebec, pp. 36-42.

Gunning, R. E., Wales, A. D., Pearson, G. R., Done, E., Cookson, A. L. and Woodward, M. J. (2001) Attaching and effacing lesions in the intestines of two calves associated with natural infection with Escherichia coli O26:H11. Veterinary Record, 148 (25). pp. 780-782. ISSN 0042-4900 doi: 10.1136/vr.148.25.780

Hoyles, L., Falsen, E., Holmström, G., Persson, A., Sjödén, B. and Collins, M. D. (2001) Actinomyces suimastitidis sp. nov., isolated from pig mastitis. International Journal of Systematic and Evolutionary Microbiology, 51 (4). pp. 1323-1326. ISSN 1466-5034

Hoyles, L., Falsen, E., Pascual, C., Sjödén, B., Foster, G., Henderson, D. and Collins, M. D. (2001) Actinomyces catuli sp. nov., from dogs. International Journal of Systematic and Evolutionary Microbiology, 51 (2). pp. 679-682. ISSN 1466-5034

Hoyles, L., Foster, G., Falsen, E., Thomson, L. F. and Collins, M. D. (2001) Facklamia miroungae sp. nov., from a juvenile southern elephant seal (Mirounga leonina). International Journal of Systematic and Evolutionary Microbiology, 51 (4). pp. 1401-1403. ISSN 1466-5034

Hoyles, L., Pascual, C., Falsen, E., Foster, G., Grainger, J. M. and Collins, M. D. (2001) Actinomyces marimammalium sp. nov., from marine mammals. International Journal of Systematic and Evolutionary Microbiology, 51 (1). pp. 151-156. ISSN 1466-5034

Karatzas, A.K., Kets, E.P.W., Smid, E.J. and Bennik, M.H.J. (2001) The combined action of carvacrol and high hydrostatic pressure on Listeria monocytogenes Scott A. Journal of Applied Microbiology, 90 (3). pp. 463-469. ISSN 1365-2672 doi: 10.1046/j.1365-2672.2001.01266.x

Kirjavainen, P.V., Apostolou, E., Arvola, T., Salminen, S.J., Gibson, G. R. and Isolauri, E. (2001) Characterizing the composition of intestinal microflora as a prospective treatment target in infant allergic disease. FEMS Immunology and Medical Microbiology, 32 (1). pp. 1-7. ISSN 0928-8244 doi: 10.1016/S0928-8244(01)00272-3

La Ragione, R.M., Casula, G., Cutting, S.M. and Woodward, M.J. (2001) Bacillus subtilis spores competitively exclude Escherichia coli O78:K80 in poultry. Veterinary Microbiology, 79 (2). pp. 133-142. ISSN 0378-1135 doi: 10.1016/s0378-1135(00)00350-3

La Ragione, R.M., Coles, K.E., Jorgensen, F., Humphrey, T.J. and Woodward, M.J. (2001) Virulence in the chick model and stress tolerance of Salmonella enterica serovar Orion var. 15+. International Journal of Medical Microbiology, 290 (8). pp. 707-718. ISSN 1438-4221 doi: 10.1016/S1438-4221(01)80011-4

Liebana, E., Garcia-Migura, L., Breslin, M.F., Davies, R.H. and Woodward, M.J. (2001) Diversity of strains of Salmonella enterica serotype Enteritidis from English poultry farms assessed by multiple genetic fingerprinting. Journal of Clinical Microbiology, 39 (1). pp. 154-161. ISSN 0095-1137 doi: 10.1128/jcm.39.1.154-161.2001

Liebana, E., Guns, D., Garcia-Migura, L., Woodward, M.J., Clifton-Hadley, F.A. and Davies, R.H. (2001) Molecular typing of Salmonella serotypes prevalent in animals in England: assessment of methodology. Journal of Clinical Microbiology, 39 (10). pp. 3609-3616. ISSN 0095-1137 doi: 10.1128/jcm.39.10.3609-3616.2001

Naughton, P. J., Grant, G., Bardocz, S., Allen-Vercoe, E., Woodward, M. J. and Pusztai, A. (2001) Expression of type 1 fimbriae (SEF 21) of Salmonella enterica serotype Enteritidis in the early colonisation of the rat intestine. Journal of Medical Microbiology, 50 (2). pp. 191-197. ISSN 0022-2615

Olano-Martin, E., Mountzouris, K.C., Gibson, G. R. and Rastall, R.A. (2001) Continuous production of pectic oligosaccharides in an enzyme membrane reactor. Food Engineering and Physical Production , 66 (7). pp. 966-971. ISSN 0022-1147 doi: 10.1111/j.1365-2621.2001.tb08220.x

Rabui, B. A., Jay, A.J., Gibson, G. R. and Rastall, R.A. (2001) Synthesis and fermentation profiles of novel galacto-oligosaccharides by-galactosidases from Bifidobacterium species. Applied and Environmental Microbiology, 67 (6). pp. 2526-2530. ISSN 0099-2240 doi: 10.1128/AEM.67.6.2526-2530.2001

Randall, L. P. and Woodward, M. J. (2001) Multiple antibiotic resistance (mar) locus in Salmonella enterica serovar typhimurium DT104. Applied and Environmental Microbiology, 67 (3). pp. 1190-1197. ISSN 1098-5336 doi: 10.1128/aem.67.3.1190-1197.2001

Randall, L. P. and Woodward, M. J. (2001) Role of the mar locus in virulence of Salmonella enterica serovar Typhimurium DT104 in chickens. Journal of Medical Microbiology, 50 (9). pp. 770-779. ISSN 0022-2615

Randall, L. P., Cooles, S. W., Sayers, A. R. and Woodward, M. J. (2001) Association between cyclohexane resistance in Salmonella of different serovars and increased, resistance to multiple antibiotics, disinfectants and dyes. Journal of Medical Microbiology, 50 (10). pp. 919-924. ISSN 0022-2615

Robertson, J.A., Ryden, P., Botham, R.L., Reading, S., Gibson, G. and Ring, S.G. (2001) Structural properties of diet-derived polysaccharides and their influence on butyrate production during fermentation. LWT-Food Science and Technology, 34 (8). pp. 567-573. ISSN 0023-6438 doi: 10.1006/fstl.2001.0816

Rycroft, C. E., Jones, M.R., Gibson, G. R. and Rastall, R.A. (2001) Fermentation properties of gentio-oligosaccharides. Letters in Applied Microbiology, 32 (3). pp. 156-161. ISSN 0266-8254 doi: 10.1046/j.1472-765x.2001.00875.x

Rycroft, C. E., Jones, M.R., Gibson, G. R. and Rastall, R.A. (2001) A comparative in vitro evaluation of the fermentation properties of prebiotic oligosaccharides. Journal of Applied Microbiology, 91 (5). pp. 878-887. ISSN 1364-5072 doi: 10.1046/j.1365-2672.2001.01446.x

Sojka, M., Sayers, A. R. and Woodward, M. J. (2001) Analysis of expression of flagella by Salmonella enterica serotype Typhimurium by monoclonal antibodies recognising both phase specific and common epitopes. Veterinary Microbiology, 78 (1). pp. 61-77. ISSN 0378-1135 doi: 10.1016/s0378-1135(00)00291-1

Steer, T., Collins, M.D., Gibson, G. R., Hippe, H. and Lawson, P.A. (2001) Clostridium hathewayi sp. nov., from human faeces. Systematic and Applied Microbiology, 24 (3). pp. 353-357. ISSN 0723-2020 doi: 10.1078/0723-2020-00044

Tuohy, K. M., Finlay, R. K., Wynne, A. G. and Gibson, G. R. (2001) A human volunteer study on the prebiotic effects of HP-Inulin – gut bacteria enumerated using fluorescent in situ hybridisation (FISH). Anaerobe, 7 (3). pp. 113-118. ISSN 1075-9964 doi: 10.1006/anae.2001.0368

Tuohy, K.M., Kolida, S., Lustenberger, A. M. and Gibson, G. R. (2001) The prebiotic effects of biscuits containing partially hydrolyzed guar gum and fructooligosaccharides – A human volunteer study. British Journal of Nutrition, 86 (3). pp. 341-348. ISSN 0007-1145 doi: 10.1079/BJN2001394

Wales, A. D., Clifton-Hadley, F. A., Cookson, A. L., Dibb-Fuller, M. P., La Ragione, R. M., Sprigings, K. A., Pearson, G. R. and Woodward, M. J. (2001) Experimental infection of six-month-old sheep with Escherichia coli O157:H7. Veterinary Record, 148 (20). pp. 630-631. ISSN 0042-4900 doi: 10.1136/vr.148.20.630

Wales, A. D., Pearson, G. R., Skuse, A. M., Roe, J. M., Hayes, C. M., Cookson, A. L. and Woodward, M. J. (2001) Attaching and effacing lesions caused by Escherichia coli O157:H7 in experimentally inoculated neonatal lambs. Journal of Medical Microbiology, 50 (9). pp. 752-758. ISSN 0022-2615

Walker, R. A., Lindsay, E., Woodward, M. J., Ward, L. R. and Threlfall, E. J. (2001) Variation in clonality and antibiotic-resistance genes among multiresistant Salmonella enterica serotype typhimurium phage-type U302 (MR U302) from humans, animals, and foods. Microbial Drug Resistance-Mechanisms Epidemiology and Disease, 7 (1). pp. 13-21. ISSN 1076-6294 doi: 10.1089/107662901750152701

Walker, R. A., Saunders, N., Lawson, A. J., Lindsay, E. A., Dassama, M., Ward, L. R., Woodward, M. J., Davies, R. H., Liebana, E. and Threlfall, E. J. (2001) Use of a LightCycler gyrA mutation assay for rapid identification of mutations conferring decreased susceptibility to ciprofloxacin in multiresistant Salmonella enterica serotype typhimurium DT104 isolates. Journal of Clinical Microbiology, 39 (4). pp. 1443-1448. ISSN 0095-1137 doi: 10.1128/jcm.39.4.1443-1448.2001

Whelan, K., Gibson, G., Judd, P.A. and Taylor, M.A. (2001) The role of probiotics and prebiotics in the management of diarrhoea associated with enteral tube feeding. Journal of Human Nutrition and Dietetics, 14 (6). pp. 423-433. ISSN 0952-3871 doi: 10.1046/j.1365-277X.2001.00322.x

Wynne, A.G., Ames, J.M. and Gibson, G. (2001) An in vitro assessment of the fate of Maillard reaction products in the human gastrointestinal tract. In: Ames, J.M. (ed.) Melanoidins in Food Health. Proceedings Cost Action 919. European Communities, Luxembourg, pp. 93-100.

2000

Ames, J.M., Gibson, G., Bailey, R.G. and Wynne, A. (2000) Chemistry and possible physiological function of selected components of a glucose-lysine model system. In: Ames, J.M. and Hofmann, T.F. (eds.) Chemistry and Physiology of Selected Food Colorants. American Chemical Society, Washington, pp. 152-167.

Attwood, R. and Gibson, G. (2000) Aspects of probiotic use in preventative medicine. Chemist and Druggist, August. pp. 18-20.

Chart, H., Smith, H. R., La Ragione, R. M. and Woodward, M. J. (2000) An investigation into the pathogenic properties of Escherichia coli strains BLR, BL21, DH5 alpha and EQ1. Journal of Applied Microbiology, 89 (6). pp. 1048-1058. ISSN 1364-5072 doi: 10.1046/j.1365-2672.2000.01211.x

Collighan, R. J., Naylor, R. D., Martin, P. K., Cooley, B. A., Buller, N. and Woodward, M. J. (2000) A spirochete isolated from a case of severe virulent ovine foot disease is closely related to a Treponeme isolated from human periodontitis and bovine digital dermatitis. Veterinary Microbiology, 74 (3). pp. 249-257. ISSN 0378-1135 doi: 10.1016/s0378-1135(00)00190-5

Collighan, R. J., Walker, S. L. and Woodward, M. J. (2000) Sequence analysis and distribution in Salmonella enterica serovars of IS3-like elements. International Journal of Medical Microbiology, 290 (7). pp. 619-626. ISSN 1438-4221 doi: 10.1016/S1438-4221(00)80011-9

Collins, M. D., Hoyles, L., Kalfas, S., Sundquist, G., Monsen, T., Nikolaitchouk, N. and Falsen, E. (2000) Characterization of Actinomyces isolates from infected root canals of teeth: description of Actinomyces radicidentis sp. nov. Journal of Clinical Microbiology, 38 (9). pp. 3399-3403. ISSN 0095-1137

Dibb-Fuller, M. P. and Woodward, M. J. (2000) Contribution of fimbriae and flagella of Salmonella enteritidis to colonization and invasion of chicks. Avian Pathology, 29 (4). pp. 295-304. ISSN 0307-9457 doi: 10.1080/03079450050118412

Fooks, L., Gibson, G. and Rabiu , B. (2000) Current concepts in probiotics. Current Medical Literature, Clinical Nutrition (9). pp. 29-40.

Fuller, R. and Gibson, G. (2000) Aspects of in vitro and in vivo research approaches directed towards identifying probiotics and prebiotics for human use. Journal of Nutrition (130). 391S-395S. ISSN 1541-6100

Gibson, G. (2000) Probiotics and prebiotics: an introduction. In: Gibson, G. and Angus, F. (eds.) Leatherhead Ingredients Handbook: Prebiotics and Probiotics. Leatherhead Food Research Association, i-xii.

Hoyles, L., Falsen, E., Foster, G., Pascual, C., Greko, C. and Collins, M. D. (2000) Actinomyces canis sp. nov., isolated from dogs. International Journal of Systematic and Evolutionary Microbiology, 50 (4). pp. 1547-1551. ISSN 1466-5026

Hoyles, L., Foster, G., Falsen, E. and Collins, M. D. (2000) Characterization of a Gemella-like organism isolated from an abscess of a rabbit: description of Gemella cunicula sp. nov. International Journal of Systematic and Evolutionary Microbiology, 50 (6). pp. 2037-2041. ISSN 1466-5026

Hoyles, L., Lawson, P. A., Foster, G., Falsen, E., Ohlén, M., Grainger, J. M. and Collins, M. D. (2000) Vagococcus fessus sp. nov., isolated from a seal and a harbour porpoise. International Journal of Systematic and Evolutionary Microbiology, 50 (3). pp. 1151-1154. ISSN 1466-5026

Jauregi, P., Mitchell, G.R. and Varley, J. (2000) Colloidal gas aphrons (CGA): dispersion and structural features. AIChE Journal, 46 (1). pp. 24-36. ISSN 0001-1541 doi: 10.1002/aic.690460105

Karatzas, K.-A. (2000) Combined action of S-carvone and mild heat treatment on Listeria monocytogenes Scott A. Journal of Applied Microbiology, 89 (2). pp. 296-301. ISSN 1364-5072 doi: 10.1046/j.1365-2672.2000.01110.x

Kolida, S., Tuohy, K.M. and Gibson, G. (2000) The human gut flora in nutrition and approaches for its dietary modulation. BNF Nutrition Foundation Nutrition Bulletins , 25. pp. 223-231.

La Ragione, R. M., Cooley, W. A. and Woodward, M. J. (2000) The role of fimbriae and flagella in the adherence of avian strains of Escherichia coli O78:K80 to tissue culture cells and tracheal and gut explants. Journal of Medical Microbiology, 49 (4). pp. 327-338. ISSN 0022-2615

La Ragione, R. M., Sayers, A. R. and Woodward, M. J. (2000) The role of fimbriae and flagella in the colonization, invasion and persistence of Escherichia coli O78 : K80 in the day-old-chick model. Epidemiology and Infection, 124 (3). pp. 351-363. ISSN 1469-4409 doi: 10.1017/s0950268899004045

Morse, R., Gibson, G. and Collins, M.D. (2000) Secondary structure analysis of the dissimilatory sulphite reductase in Desulfovibrio desulfuricans. Letters in Applied Microbiology, 30 (5). pp. 375-378. ISSN 0266-8254 doi: 10.1046/j.1472-765x.2000.00659.x

Nikolaitchouk, N., Hoyles, L., Falsen, E., Grainger, J. M. and Collins, M. D. (2000) Characterization of Actinomyces isolates from samples from the human urogenital tract: description of Actinomyces urogenitalis sp. nov. International Journal of Systematic and Evolutionary Microbiology, 50 (4). pp. 1649-1654. ISSN 1466-5026

Olano-Martin, E., Mountzouris, K.C., Gibson, G. and Rastall, R.A. (2000) In vitro fermentability of dextran, oligodextran and maltodextran by human gut bacteria. British Journal of Nutrition (83). pp. 247-255.

Palframan, R., McCartney, A.L. and Gibson, G. (2000) Gut feeling about good health. Chemistry and Industry (22). pp. 739-741.

Parham, N.J. and Gibson, G. R. (2000) Microbes involved in dissimilatory nitrate reduction in the human large intestine. FEMS microbiology ecology, 31 (1). pp. 21-28. ISSN 1574-6941 doi: 10.1111/j.1574-6941.2000.tb00667.x

Rabiu, B.A., McCartney, A.L., Macfarlane, G.T. and Gibson, G. (2000) Catabolite inhibition: an intrinsic role for fructooligosaccharides. In: Buttriss, J. and Saltmarsh, M. (eds.) Functional Foods II: Claims and Evidence. Royal Society of Chemistry, Cambridge, pp. 91-96.

Rastall, R.A., Fuller, R., Gaskins, H.R. and Gibson, G. (2000) Colonic functional foods. In: Gibson, G. and Williams, C.M. (eds.) Functional Foods: Concept to Product. Woodhead Publishing Limited, Cambridge, pp. 72-95.

Robertson, J. M. C., Grant, G., Allen-Vercoe, E., Woodward, M. J., Pusztai, A. and Flint, H. J. (2000) Adhesion of Salmonella enterica var Enteritidis strains lacking fimbriae and flagella to rat ileal explants cultured at the air interface or submerged in tissue culture medium. Journal of Medical Microbiology, 49 (8). pp. 691-696. ISSN 0022-2615

Steer, T., Carpenter, H., Tuohy, K. and Gibson, G. (2000) Perspectives on the role of the human gut microbiota and its modulation by pro- and prebiotics. Nutrition Research Reviews (13). pp. 229-254.

Woodward, M. J., Sojka, M., Sprigings, K. A. and Humphrey, T. J. (2000) The role of SEF14 and SEF17 fimbriae in the adherence of Salmonella enterica serotype Enteritidis to inanimate surfaces. Journal of Medical Microbiology, 49 (5). pp. 481-487. ISSN 0022-2615

1999

Allen-Vercoe, E. and Woodward, M. J. (1999) Colonisation of the chicken caecum by afimbriate and aflagellate derivatives of Salmonella enterica serotype Enteritidis. Veterinary Microbiology, 69 (4). pp. 265-275. ISSN 0378-1135 doi: 10.1016/s0378-1135(99)00114-5

Allen-Vercoe, E. and Woodward, M. J. (1999) The role of flagella, but not fimbriae, in the adherence of Salmonella enterica serotype Enteritidis to chick gut explant. Journal of Medical Microbiology, 48 (8). pp. 771-780. ISSN 0022-2615

Allen-Vercoe, E., Sayers, A. R. and Woodward, M. J. (1999) Virulence of Salmonella enterica serotype Enteritidis aflagellate and afimbriate mutants in a day-old chick model. Epidemiology and Infection, 122 (3). pp. 395-402. ISSN 0950-2688 doi: 10.1017/s0950268899002460

Ames, J.M., Wynne, A., Hofman, A., Plos, S. and Gibson, G. (1999) The effect of a model melanoidin mixture in faecal bacterial populations in vitro. British Journal of Nutrition (82). pp. 489-495.

Bell, S.A., Steer, T.E. and Gibson, G. (1999) Diet, bacteria and bowel cancer. Nutrition and Food Science (4). pp. 187-191.

Collins, M. D., Hoyles, L., Lawson, P. A., Falsen, E., Robson, R. L. and Foster, G. (1999) Phenotypic and phylogenetic characterization of a new Corynebacterium species from dogs: description of Corynebacterium auriscanis sp. nov. Journal of Clinical Microbiology, 37 (11). pp. 3443-3447. ISSN 0095-1137

Collins, M.D. and Gibson, G. (1999) Probiotics, prebiotics and synbiotics: Dietary approaches for the modulation of microbial ecology. American Journal of Clinical Nutrition (69). pp. 1052-1057.

Dibb-Fuller, M. P., Allen-Vercoe, E., Thorns, C. J. and Woodward, M. J. (1999) Fimbriae- and flagella-mediated association with and invasion of cultured epithelial cells by Salmonella enteritidis. Microbiology-Uk, 145. pp. 1023-1031. ISSN 1350-0872

Fooks, L.J., Fuller, R. and Gibson, G. (1999) Prebiotics, probiotics and human gut microbiology. International Dairy Journal (9). pp. 53-61.

Fuller, R. and Gibson, G. R. (1999) Probiotics and prebiotics. Definition and role. In: Sadler, M., Caballero, B. and Strain, S. (eds.) Encyclopedia of Human Nutrition. Academic Press, London, pp. 1633-1639.

Gibson, G. (1999) Dietary modulation of the human gut microflora using the prebiotics oligofructose and inulin. Journal of Nutrition (129). pp. 1438-1441.

Gibson, G. (1999) Evaluating the efficacy of pro- and prebiotics. In: Functional Foods and Practical and Scientific Considerations of Conducting Food Efficacy Trials to Support Health Claims. IBC library series. IBC Business Publishing, London, pp. 149-152. ISBN 9781852716080

Gibson, G. and Collins, M.D. (1999) Concept of balanced colonic microbiota, prebiotics and synbiotics. In: Hanson, L.A. and Yolken, R.H. (eds.) Probiotics, other Nutritional Factors and Intestinal Microflora. Nestle Nutrition Workshop Series, 42. Nestec Ltd. Vevey/Lippincott-Raven Publishers, Philadelphia, pp. 139-156.

Gibson, G. R., Rastall, R.A. and Roberfroid, M.B. (1999) Prebiotics. In: Gibson, G. and Roberfroid, M.B. (eds.) Colonic Microbiota, Nutrition and Health. Kluwer Academic Publishers, pp. 101-124. ISBN 9789401710794

Gibson, G. R., Wynne, A. and Bird, A. (1999) Microflora of the intestine: role and effects. In: Sadler, M., Caballero, B. and Strain, S. (eds.) Encyclopedia of Human Nutrition. Academic Press, London, pp. 1282-1289.

Hamilton-Miller, J. and Gibson, G. (1999) Efficacy studies of probiotics: a call for guidelines. British Journal of Nutrition (82). pp. 73-75.

Harmsen, H.J.M., Gibson, G., Elfferich, P., Raangs, G.C., Wideboer-Veloo, A.C.M., Argaiz, A., Roberfroid, M.B. and Welling, G.W. (1999) Comparison of viable cell counts and fluorescent in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria. FEMS Microbiology Ecology (183). pp. 125-129.

Kirjavainen, P. and Gibson, G. (1999) Healthy gut microflora and allergy: factors influencing the development of the microflora. Annals of Medicine (31). pp. 288-292.

La Ragione, R. M., Collighan, R. J. and Woodward, M. J. (1999) Non-curliation of Escherichia coli O78 : K80 isolates associated with IS1 insertion in csgB and reduced persistence in poultry infection. Fems Microbiology Letters, 175 (2). pp. 247-253. ISSN 0378-1097 doi: 10.1111/j.1574-6968.1999.tb13627.x

Pearson, G. R., Bazeley, K. J., Jones, J. R., Gunning, R. F., Green, M. J., Cookson, A. and Woodward, M. J. (1999) Attaching and effacing lesions in the large intestine of an eight-month-old heifer associated with Escherichia coli O26 infection in a group of animals with dysentery. Veterinary Record, 145 (13). pp. 370-373. ISSN 0042-4900

Petrovska, L., Hewinson, R. G., Dougan, G., Maskell, D. J. and Woodward, M. J. (1999) Brucella melitensis 16M: characterisation of the galE gene and mouse immunisation studies with a galE deficient mutant. Veterinary Microbiology, 65 (1). pp. 21-36. ISSN 0378-1135 doi: 10.1016/s0378-1135(98)00281-8

Rycroft, C.E., Fooks, L.J. and Gibson, G. (1999) Methods for assessing the potential of prebiotics and probiotics. Current Opinion in Clinical Nutrition and Metabolic Care, 2 (6). pp. 481-484. ISSN 1363-1950 doi: 10.1097/00075197-199911000-00008

Suau, A., Bonnet, R., Sutren, M., Godon, J.J., Gibson, G., Collins, M.D. and Dore, J. (1999) Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Applied and Environment Microbiology (65). pp. 4799-4807.

Walker, S. L., Sojka, M., Dibb-Fuller, M. and Woodward, M. J. (1999) Effect of pH, temperature and surface contact on the elaboration of fimbriae and flagella by Salmonella serotype Enteritidis. Journal of Medical Microbiology, 48 (3). pp. 253-261. ISSN 0022-2615

Willis, C.L. and Gibson, G. (1999) The natural microflora of humans. In: Robinson, R., Batt, C. and Patel, P. (eds.) Encyclopedia of Food Microbiology. Academic Press, London.

Willis, C.L., Gibson, G., Holt, J., Atherton, S. and Allison, C. (1999) Negative correlation between oral malodour and numbers and activities of sulphate-reducing bacteria in the human mouth. Archives of Oral Biology (44). pp. 665-670.

Woodward, M. J., Gavier-Widen, D., McLaren, I. M., Wray, C., Sozmen, M. and Pearson, G. R. (1999) Infection of gnotobiotic calves with Escherichia coli O157 : H7 strain A84. Veterinary Record, 144 (17). pp. 466-470. ISSN 0042-4900

1998

Allen-Vercoe, E., Collighan, R. and Woodward, M. J. (1998) The variant rpoS allele of S-enteritidis strain 27655R does not affect virulence in a chick model nor constitutive curliation but does generate a cold-sensitive phenotype. Fems Microbiology Letters, 167 (2). pp. 245-253. ISSN 0378-1097 doi: 10.1016/s0378-1097(98)00396-6

Demirkan, I., Carter, S. D., Murray, R. D., Blowey, R. W. and Woodward, M. J. (1998) The frequent detection of a treponeme in bovine digital dermatitis by immunocytochemistry and polymerase chain reaction. Veterinary Microbiology, 60 (2-4). pp. 285-292. ISSN 0378-1135 doi: 10.1016/s0378-1135(98)00146-1

Fuller, R. and Gibson, G. (1998) Probiotics and prebiotics: microflora management for improved gut health. Clinical Microbiology and Infection (4). pp. 477-480.

Gibson, G. (1998) Prebiotics as microflora management tools. Gastroenterology International (11). pp. 20-21.

Gibson, G. and Fuller, R. (1998) Effect of oligofructoses on intestinal microenvironment and faecal flora. In: Rutgeers, P. and Ghoos, Y. (eds.) Proceedings of Symposium on Nutrition and the Gastrointestinal Microenvironment. Nutricia, Belgium, pp. 25-41.

Gibson, G. and Fuller, R. (1998) Probiotics and prebiotics: Microbes on the menu. CHO, The Sugar Bureau 9 (3). pp. 1-3.

Gibson, G. and Fuller, R. (1998) The role of probiotics and prebiotics in the functional food concept. In: Sadler, M.J. and Saltmarsh, M. (eds.) Functional Foods, The Consumer, the Products and the Evidence. The Royal Society of Chemistry, Cambridge, pp. 3-14.

Gibson, G. and McCartney, A.L. (1998) Modification of gut flora by dietary means. Biochemical Society Transactions (26). pp. 222-228.

Gibson, G. R. (1998) Dietary modulation of the human gut microflora using prebiotics. British Journal of Nutrition, 80 (4). S209-S212. ISSN 0007-1145

Macfarlane, G.T., Macfarlane, S. and Gibson, G. (1998) Validation of a three-stage compound continuous culture system for investigating the effect of retention time on the ecology and metabolism of bacteria in the human colonic microbiota. Microbial Ecology (35). pp. 180-187.

McCartney, A.L. and Gibson, G. (1998) The application of prebiotics in human health and nutrition. In: Proceeding Lactic 97. Which Strains? For Which Products? Adria Normandie, pp. 59-73.

Nash, A. and Gibson, G. (1998) Probiotics and prebiotics: potential for health promotion. Food Technology International. pp. 17-19.

Roberfroid, M.B., Van Loo, J. and Gibson, G. (1998) The bifidogenic nature of chicory inulin and its hydrolysis products. Journal of Nutrition (128). pp. 11-18.

Salminen, S., Bouley, C., Boutron-Ruault, M.-C., Cummings, J.H., Franck, A., Gibson, G., Isolauri, E., Moreau, M.C., Roberfroid, M.B. and Rowland, I.R. (1998) Functional food science and gastrointestinal physiology and function. British Journal of Nutrition (80). S147-S171. ISSN 0007-1145

Ziemer, C.J. and Gibson, G. R. (1998) An overview of probiotics, prebiotics and synbiotics in the functional food concept: perspectives and future strategies. International Dairy Journal, 8 (5-6). pp. 473-479. ISSN 0958-6946 doi: 10.1016/S0958-6946(98)00071-5

1997

Allen-Vercoe, E., Dibb-Fuller, M., Thorns, C. J. and Woodward, M. J. (1997) SEF17 fimbriae are essential for the convoluted colonial morphology of Salmonella enteritidis. Fems Microbiology Letters, 153 (1). pp. 33-42. ISSN 0378-1097 doi: 10.1016/s0378-1097(97)00219-x

Collighan, R. J. and Woodward, M. J. (1997) Sequence analysis and distribution of an IS3-like insertion element isolated from Salmonella enteritidis. Fems Microbiology Letters, 154 (2). pp. 207-213. ISSN 0378-1097 doi: 10.1111/j.1574-6968.1997.tb12645.x

Collighan, R. J. and Woodward, M. J. (1997) Spirochaetes and other bacterial species associated with bovine digital dermatitis. Fems Microbiology Letters, 156 (1). pp. 37-41. ISSN 0378-1097 doi: 10.1111/j.1574-6968.1997.tb12702.x

Dibb-Fuller, M., Allen-Vercoe, E., Woodward, M. J. and Thorns, C. J. (1997) Expression of SEF17 fimbriae by Salmonella enteritidis. Letters in Applied Microbiology, 25 (6). pp. 447-452. ISSN 0266-8254 doi: 10.1111/j.1472-765X.1997.tb00015.x

Fuller, R. and Gibson, G. (1997) Modification of the intestinal microflora using probiotics and prebiotics. Scandinavian Journal of Gastroenterology (32). pp. 28-31.

Gibson, G., Saavedra, J.M., Macfarlane, S. and Macfarlane, G.T. (1997) Gastrointestinal microbial disease. In: Fuller, R. (ed.) Probiotics 2: Application and Practical Aspects. Chapman and Hall, Andover, pp. 10-39.

Hewinson, R. G., Griffiths, P. C., Bevan, B. J., Kirwan, S. E. S., Field, M. E., Woodward, M. J. and Dawson, M. (1997) Detection of Chlamydia psittaci DNA in avian clinical samples by polymerase chain reaction. Veterinary Microbiology, 54 (2). pp. 155-166. ISSN 0378-1135 doi: 10.1016/s0378-1135(96)01268-0

Mackey, B.M. and Gibson, G. (1997) Escherichia coli 0157 - from farm to fork and beyond. Society for General Microbiology Quarterly. pp. 55-57.

Rijpkema, S. G. T., David, G. P., Hughes, S. L. and Woodward, M. J. (1997) Partial identification of spirochaetes from two dairy cows with digital dermatitis by polymerase chain reaction analysis of the 16S ribosomal RNA gene. Veterinary Record, 140 (10). pp. 257-259. ISSN 0042-4900

Willis, C.L., Cummings, J.H., Neale, G. and Gibson, G. (1997) Nutritional aspects of dissimilatory sulphate reduction in the human large intestine. Current Microbiology (35). pp. 294-298.

Woodward, M. J., Swallow, C., Kitching, A., Dalley, C. and Sayers, A. R. (1997) Leptospira hardjo serodiagnosis: a comparison of MAT, ELISA and immunocomb. Veterinary Record, 141 (23). pp. 603-604. ISSN 0042-4900

Woolford, A. J., Hewinson, R. G., Woodward, M. and Dale, J. W. (1997) Sequence heterogeneity of an mpb70 gene analogue in Mycobacterium kansasii. Fems Microbiology Letters, 148 (1). pp. 43-48. ISSN 0378-1097 doi: 10.1016/s0378-1097(97)00010-4

1996

Ayling, R. D., Woodward, M. J., Evans, S. and Newell, D. G. (1996) Restriction fragment length polymorphism of polymerase chain reaction products applied to the differentiation of poultry campylobacters for epidemiological investigations. Research in Veterinary Science, 60 (2). pp. 168-172. ISSN 0034-5288 doi: 10.1016/s0034-5288(96)90013-2

Bernalier, A., Lelait, M., Rochet, V., Grivet, J.P., Gibson, G. and Durand, M. (1996) Acetogenesis from H2 and CO2 by methane and non-methane producing human colonic bacteria. FEMS Microbiology Ecology (19). pp. 193-202.

Cummings, J.H., Milojevic, S., Newton, J.M., Harding, M., Coward, W.A., Gibson, G., Botham, R.L., Ring, S.G., Wraight, A.P., Stockham, M.A. and Allwood, M.A. (1996) In vivo studies of amylose coated microspheres for drug delivery to the colon. Journal of Controlled Release (40). pp. 123-131.

Edwards, C.A., Gibson, G., Macfarlane, G.T., Champ, M., Jensen, B.B., Mathers, J., Nagengast, F., Rumney, C. and Quehl, A. (1996) In vitro method for quantification of the fermentation of starch by human faecal bacteria. Journal of Science and Food Agriculture (71). pp. 209-217.

Gibson, G. (1996) Oligosaccharides and prebiotics. In: Petfood Forum 96. Watt Publishing Co., Illinois, USA, pp. 42-49.

Gibson, G. (1996) Prebiotics and probiotics: their functional use. In: Shaw, S. (ed.) Functional food, nutraceutical or pharmaceutical? IBC Technical Services, London, pp. 85-97.

Gibson, G. (1996) The concept of prebiotics as applied to fructooligosaccharides and inulin. In: Fuchs, A. (ed.) Proceedings 5th Research Meeting on Inulin. Carbohydrate Research Foundation, Akzo Nobel, The Netherlands, pp. 81-91.

Gibson, G. (1996) An overview of the composition and activities of the human colonic microflora. In: Malkki, Y. and Cummings, J.H. (eds.) Cost Action 92; Dietary fibre and fermentation in the colon. Office for Official Publications of the European Communities, Luxembourg, pp. 11-23.

Gibson, G. and Beaumont, A. (1996) An overview of human colonic bacteriology in health and disease. In: Leeds, A.R. and Rowland, I.R. (eds.) Gut flora and health - past, present and future. Royal Society of Medicine Press, London, pp. 3-11.

Gibson, G., Willems, A., Reading, S. and Collins, M.D. (1996) Fermentation of non-digestible oligosaccharides by human colonic bacteria. Proceedings of the Nutrition Society, 55. pp. 899-912. ISSN 0029-6651

Macfarlane, G.T. and Gibson, G. (1996) Carbohydrate fermentation, energy transduction and gas metabolism in the human large intestine. In: Mackie, R.I. and White, B.A. (eds.) Ecology and Physiology of Gastrointestinal Microbes. Volume 1. Chapman and Hall, London, pp. 269-318.

Milojevic, S., Newton, J.M., Cummings, J.H., Gibson, G., Botham, R.L., Ring, S., Stockham, M. and Allwood, M.C. (1996) Amylose as a coating for drug delivery to the colon: Preparation and in vitro evaluation using 5-aminosalicylic acid pellets. Journal of Controlled Release (38). pp. 75-84.

Milojevic, S., Newton, J.M., Cummings, J.H., Gibson, G., Botham, R.L., Ring, S., Stockham, M. and Allwood, M.C. (1996) Amylose as a coating for drug delivery to the colon: Preparation and in vitro evaluation using glucose pellets. Journal of Controlled Release (38). pp. 85-94.

Redstone, J. S. and Woodward, M. J. (1996) The development of a ligase mediated PCR with potential for the differentiation of serovars within Leptospira interrogans. Veterinary Microbiology, 51 (3-4). pp. 351-362. ISSN 0378-1135 doi: 10.1016/0378-1135(96)00053-3

Thorns, C. J., Turcotte, C., Gemmell, C. G. and Woodward, M. J. (1996) Studies into the role of the SEF14 fimbrial antigen in the pathogenesis of Salmonella enteritidis. Microbial Pathogenesis, 20 (4). pp. 235-246. ISSN 0882-4010 doi: 10.1006/mpat.1996.0022

Willis, C.L., Cummings, J.H., Neale, G. and Gibson, G. (1996) In vitro effects of mucin fermentation on the growth of human colonic sulphate-reducing bacteria. Anaerobe (2). pp. 117-122.

Woodward, M. J. and Kirwan, S. E. S. (1996) Detection of Salmonella enteritidis in eggs by the polymerase chain reaction. Veterinary Record, 138 (17). pp. 411-413. ISSN 0042-4900

Woodward, M. J., AllenVercoe, E. and Redstone, J. S. (1996) Distribution, gene sequence and expression in vivo of the plasmid encoded fimbrial antigen of Salmonella serotype Enteritidis. Epidemiology and Infection, 117 (1). pp. 17-28. ISSN 0950-2688

1995

Gibson, G. (1995) In vitro and in vivo effects of oligofructose and inulin on the colonic microbiota. In: 1st Orafti Research Conference, pp. 30-64.

Gibson, G. and Macfarlane, G.T. (1995) Mechanisms and clinical consequences of H2 disposal in the human colon. In: Duerden, B.I., Wade, W.G., Brazier, J.S., Eley, A., Wren, B. and Hudson, M.J. (eds.) Medical and Dental Aspects of Anaerobes. Science Reviews, Middlesex, pp. 121-135. ISBN 9780905927596

Gibson, G. and Roberfroid, M.B. (1995) Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics. Journal of Nutrition (125). pp. 1401-1412.

Gibson, G., Beatty, E.R., Wang, X. and Cummings, J.H. (1995) Selective stimulation of bifidobacteria in the human colon by oligofructose and inulin. Gastroenterology (108). pp. 975-982.

Gibson, G., Macfarlane, S. and Macfarlane, G.T. (1995) Methodology for the isolation of Helicobacter pylori from human feces. Journal of Microbiological Methods (23). pp. 321-328.

Levitt, M.D., Gibson, G. and Christl, S.U. (1995) Gas metabolism in the large intestine. In: Gibson, G. and Macfarlane, G.T. (eds.) Human colonic bacteria: role in nutrition, physiology and pathology. CRC Press, Boca Raton, pp. 131-154. ISBN 9780849345241

Macfarlane, G. T. and Gibson, G. (1995) Microbiological aspects of short chain fatty acid production in the large bowel. In: Cummings, J. H., Rombeau, J. L. and Sakata, T. (eds.) Physiological and Clinical Aspects of Short Chain Fatty Acid Metabolism. Cambridge University Press, Cambridge, pp. 87-105. ISBN 9780521440486

Macfarlane, G.T. and Gibson, G. (1995) Bacterial infections of the colon. In: Gibson, G. and Macfarlane, G.T. (eds.) Human colonic bacteria: role in nutrition, physiology and pathology. CRC Press, Boca Raton, pp. 201-226. ISBN 9780849345241

Macfarlane, G.T., Gibson, G., Drasar, B. and Cummings, J.H. (1995) Metabolic significance of the colonic microflora. In: Whitehead, R. (ed.) Gastrointestinal and Oesophageal Physiology. Livingstone Churchill, Edinburgh, pp. 195-238.

Macfarlane, G.T., Macfarlane, S. and Gibson, G. (1995) Co-culture of Bifidobacterium adolescentis and Bacteroides thetaiotaomicron in arabinogalactan-limited chemostats: effects of dilution rate and pH. Anaerobe (1). pp. 275-281.

Milojevic, S., Newton, J.M., Cummings, J.H., Gibson, G., Botham, R.L., Ring, S., Allwood, M.C. and Stockham, M. (1995) Amylose, the new perspective in oral drug delivery to the human large intestine. STP Pharma Sciences (5). pp. 47-53.

Willis, C.L., Gibson, G., Allison, C., Macfarlane, S. and Holt, J. (1995) Growth, incidence and activities of dissimilatory sulphate-reducing bacteria in the human oral cavity. FEMS Microbiology Letters (129). pp. 267-272.

1994

Gibson, G. (1994) Gas metabolism by human colonic bacteria and consequences for the host. Journal of Applied Bacteriology. pp. 25-29. ISSN 1365-2672 (special issue:The W.H. Pierce Memorial Symposium )

Gibson, G. and Wang, X. (1994) Bifidogenic properties of different types of fructo-oligosaccharides. Food Microbiology (11). pp. 491-498.

Gibson, G. and Wang, X. (1994) Regulatory effects of bifidobacteria on the growth of other colonic bacteria. Journal of Applied Bacteriology (77). pp. 412-420.

Gibson, G. and Wang, X. (1994) Selective enrichment of bifidobacteria from human gut contents by oligofructose using continuous culture. FEMS Microbiology Letters (118). pp. 121-128.

Gibson, G., Willis, C.L. and Van Loo, J. (1994) Non digestible oligosaccharides and bifidobacteria: implications for health. International Sugar Journal (96). pp. 381-387. ISSN 0020-8841

Gibson, G. R. and Macfarlane, G.T. (1994) Intestinal bacteria and disease. In: Gibson., S.A.W. (ed.) Human Health - The Contribution of Microorganisms. Springer-Verlag, London, pp. 53-62.

Kelly, S.M., Pitcher, M.C.L., Farmery, S.M. and Gibson, G. (1994) Isolation of Helicobacter pylori from feces of patients with dyspepsia in the United Kingdom. Gastroenterology (107). pp. 1671-1674.

Macfarlane, G.T. and Gibson, G. R. (1994) Metabolic activities of the normal colonic flora. In: Gibson, S.A.W. (ed.) Human Health - The Contribution of Microorganisms. Springer-Verlag, London, pp. 17-52.

Macfarlane, G.T., Gibson, G. and Macfarlane, S. (1994) Short chain fatty acid and lactate production by human intestinal bacteria grown in batch and continuous culture. In: Cummings, J.H., Binder, H.J. and Soergel, K. (eds.) Short Chain Fatty Acids. Kluwer Publishing, London, pp. 44-60. ISBN 9780792388494

1993

Christl, S.U. , Gibson, G., Murgatroyd, P.R., Sheppach, W. and Cummings , J.H. (1993) Impaired hydrogen metabolism in pneumatosis coli. Gastroenterology (104). pp. 392-397.

Christl, S.U., Gibson, G. and Cummings, J.H. (1993) Methanogenesis in the human large intestine. Gut (34). pp. 573-574.

Gibson, G., Macfarlane, G.T. and Cummings, J.H. (1993) Leading article: Sulphate-reducing bacteria and hydrogen metabolism in the human large intestine. Gut (34). pp. 437-439.

Gibson, G., Macfarlane, S. and Macfarlane, G.T. (1993) Degradative activities of gut anaerobes studied in a 3-stage continuous culture model of the colon. Clinical Infectious Diseases (16). S420-S421.

Gibson, G., Macfarlane, S. and Macfarlane, G.T. (1993) Metabolic interactions involving sulphate-reducing and methanogenic bacteria in the human large intestine. FEMS Microbiology Ecology (12). pp. 117-125.

Macfarlane, G.T. and Gibson, G. (1993) Characteristics of protease synthesis in Bacteroides splanchnicus NCTC 10825. Applied Microbiology and Biotechnology (39). pp. 506-511.

Macfarlane, G.T., Macfarlane, S. and Gibson, G. (1993) Physiology and biochemistry of glycyl-prolyl aminopeptidase formation in Bacteroides splanchnicus. Clinical Infectious Diseases (16). S408.

Milojevic, S., Newton, J.M., Cummings, J.H., Gibson, G., Botham, L., Ring, S., Allwood, M. and Stockham, M. (1993) In vitro and in vivo evaluation of amylose coated pellets for colon specific drug delivery. Proceedings International Symposium on Controlled Release of Bioactive Material. pp. 288-289.

Parkes, R.J., Dowling, N.J.E., White, D.C., Herbert, R.A. and Gibson, G. (1993) Characterization of sulphate-reducing bacterial populations within marine and estuarine sediments with different rates of sulphate reduction. FEMS Microbiology Ecology (102). pp. 235-250.

Roberfroid, M., Gibson, G. R. and Delzenne, N. (1993) Biochemistry of oligofructose, a nondigestible fiber - an approach to calculate its caloric value. Nutrition Reviews, 51 (5). pp. 137-146. ISSN 0029-6643

Wang, X. and Gibson, G. (1993) Effects of the in vitro fermentation of oligofructose and inulin by bacteria growing in the human large intestine. Journal of Applied Bacteriology (75). pp. 373-380.

1992

Christl, S.U., Gibson, G. and Cummings, J.H. (1992) Role of dietary sulphate in the regulation of methanogenesis in the human large intestine. Gut (33). pp. 1234-1238.

Christl, S.U., Murgatroyd, P.R., Gibson, G. and Cummings, J.H. (1992) Production, excretion and metabolism of hydrogen in the large intestine. Gastroenterology (102). pp. 1269-1277.

Macfarlane , G.T., Gibson, S.A.W. and Gibson, G. (1992) Proteolytic activities of the fragilis group of Bacteroides spp. In: Duerden, B.I., Brazier, J.S., Seddon, S.V. and Wade, W.G. (eds.) Medical and Environmental Aspects of Anaerobes. Wrightson Biomedical Publications Ltd., Petersfield, pp. 130-143.

Macfarlane, G.T., Gibson, G. and Cummings, J.H. (1992) Comparison of fermentation reactions in different regions of the human colon. Journal of Applied Bacteriology (72). pp. 56-62.

Macfarlane, G.T., Gibson, G., Beatty, E. and Cummings, J.H. (1992) Estimation of short chain fatty acid production from protein by human intestinal bacteria¬ based on branched chain fatty acid production. FEMS Microbiology Ecology (101). pp. 81-88.

Macfarlane, G.T., Macfarlane, S. and Gibson, G. (1992) Synthesis and release of proteases by Bacteroides fragilis. Current Microbiology (24). pp. 55-59.

Thomas, J.E., Gibson, G., Dabou, M.K., Dale, A. and Weaver, L. (1992) Isolation of Helicobacter pylori from human faeces. Lancet (340). pp. 1194-1195.

Tsai, H.H., Sunderland, D., Gibson, G., Hart, C.A. and Rhodes, J.M. (1992) A novel mucin sulphatase from human faeces: its identification, purification and characterization. Clinical Science (82). pp. 447-454.

1991

Florin, T.H.J., Neale, G., Gibson, G., Christl, S.U. and Cummings, J.H. (1991) Metabolism of dietary sulphate: absorption and excretion in humans. Gut (32). pp. 766-773.

Gibson, G., Cummings, J.H. and Macfarlane, G.T. (1991) Growth and activities of sulphate-reducing bacteria in gut contents from healthy subjects and patients with ulcerative colitis. FEMS Microbiology Ecology (86). pp. 103-112.

Gibson, G., Macfarlane, S. and Cummings, J.H. (1991) Comparison of the fermentability of polysaccharides by mixed human faecal bacteria in relation to their suitability as bulk forming laxatives. Letters in Applied Microbiology (11). pp. 251-254.

Macfarlane, G.T. and Gibson, G. (1991) Co-utilization of polymerized carbon sources by Bacteroides ovatus grown in a 2-stage continuous culture system. Applied and Environmental Microbiology (57). pp. 1-6.

Macfarlane, G.T. and Gibson, G. R. (1991) Formation of glycoprotein degrading enzymes by Bacteroides fragilis. FEMS Microbiology Letters (77). pp. 289-294.

Macfarlane, G.T. and Gibson, G. (1991) Sulphate-reducing bacteria. In: Levett, P.N. (ed.) Anaerobic Microbiology - A Practical Approach. Oxford University Press, Oxford, pp. 201-221.

Macfarlane, G.T., Gibson, G. R. and Cummings, J.H. (1991) Extracellular and cell-associated glycosidase activities in different regions of the human large intestine. Letters in Applied Microbiology (12). pp. 3-7.

1990

Gibson, G. (1990) A review - The physiology and ecology of sulphate-reducing bacteria. Journal of Applied Bacteriology, 69 (6). pp. 769-797. doi: 10.1111/j.1365-2672.1990.tb01575.x

Gibson, G., Cummings, J.H. and Macfarlane, G.T. (1990) Factors affecting hydrogen uptake by bacteria growing in the human large intestine. In: Belaich, J.P., Bruschi, M. and Garcia, J.L. (eds.) The Microbiology and Biochemistry of Strict Anaerobes Involved in Interspecific Hydrogen Transfer. Federation of European Microbiological Societies Symposium Series, 54. Springer, New York, pp. 191-202. ISBN 9781461306139 doi: 10.1007/978-1-4613-0613-9_17

Gibson, G., Cummings, J.H., Macfarlane, G.T., Allison, C., Segal, I. , Vorster, H.H. and Walker, A.R.P. (1990) Alternative pathways for hydrogen disposal during fermentation in the human colon. Gut (31). pp. 679-683.

Macfarlane, G.T., Hay, S., Macfarlane, S. and Gibson, G. (1990) Effect of different carbohydrates on growth, polysaccharidase and glycosidase production by Bacteroides ovatus, in batch and continuous culture. Journal of Applied Bacteriology (68). pp. 179-187.

1989

Cummings, J.H. , Gibson, G. and Macfarlane, G.T. (1989) Quantitative estimates of fermentation in the hind gut of man. Acta Veterinaria Scandanavica (86). pp. 76-82.

Gibson, G., Parkes, R.J. and Herbert, R.A. (1989) Biological availability and turnover rate of acetate in marine and estuarine sediments and the relationship to dissimilatory sulphate reduction. FEMS Microbiology Ecology (62). pp. 303-306.

Macfarlane, G.T., Cummings, J.H., Macfarlane, S. and Gibson, G. (1989) Influence of retention time on degradation of pancreatic enzymes by human colonic bacteria grown in a 3-stage continuous culture system. Journal of Applied Bacteriology (67). pp. 521-527.

Macfarlane, G.T., Hay, S. and Gibson, G. (1989) Influence of mucin on glycosidase, protease and arylamidase activities of human gut bacteria grown in a 3-stage continuous culture system. Journal of Applied Bacteriology (66). pp. 407-417.

Parkes, R.J., Gibson, G., Mueller-Harvey, I., Buckingham, W.J. and Herbert, R.A. (1989) Determination of the substrates for sulphate-reducing bacteria within marine and estuarine sediments with different rates of sulphate reduction. Journal of General Microbiology (135). 175 -187.

1988

Gibson, G. and Macfarlane, G.T. (1988) Chemostat enrichment of sulphate-reducing bacteria from the large gut. Letters in Applied Microbiology (7). 127-133 .

Gibson, G., Cummings, J.H. and Macfarlane, G.T. (1988) Competition for hydrogen between sulphate-reducing and methanogenic bacteria from the human large intestine. Journal of Applied Bacteriology (65). pp. 241-247.

Gibson, G., Cummings, J.H. and Macfarlane, G.T. (1988) Use of a 3-stage continuous culture system to study the effect of mucin on dissimilatory sulfate reduction and methanogenesis by mixed populations of human gut bacteria. Applied and Environmental Microbiology (54). pp. 2750-2755.

Gibson, G., Macfarlane, G.T. and Cummings, J.H. (1988) Occurrence of sulphate-reducing bacteria in human faeces and the relationship of dissimilatory sulphate reduction to methanogenesis in the large gut. Journal of Applied Bacteriology (65). pp. 103-110.

Gibson, S.A.W. and Gibson, G. (1988) A rapid method for determination of sulphate-reducing bacteria in human faeces. Letters in Applied Microbiology (7). pp. 33-35.

Macfarlane, G.T. , Allison, C. and Gibson, G. (1988) Effect of pH on large gut proteolysis. Letters in Applied Microbiology (7). pp. 161-164.

1987

Gibson, G., Parkes, R. and Herbert, R. (1987) Evaluation of viable counting procedures for the enumeration of sulphate-reducing bacteria in estuarine sediments. Journal of Microbiological Methods, 7. pp. 101-110. ISSN 0167-7012

This list was generated on Thu Jul 24 06:17:05 2014 BST.

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