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Items where Division is "Food Microbial Sciences Research Group"

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Number of items at this level: 809.

2024

Kennedy, J. M. ORCID: https://orcid.org/0000-0001-9335-0808, De Silva, A., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Poveda, C. and Gibson, G. R. (2024) Comparison of prebiotic candidates in ulcerative colitis using an in vitro fermentation model. Journal of Applied Microbiology, 135 (2). lxae034. ISSN 1365-2672 doi: https://doi.org/10.1093/jambio/lxae034

2023

Collins, S. M., Gibson, G. R., Stainton, G. N., Bertocco, A., Kennedy, O. B. ORCID: https://orcid.org/0000-0003-3885-4872, Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Commane, D. M. (2023) Chronic consumption of a blend of inulin and arabinoxylan reduces energy intake in an ad libitum meal but does not influence perceptions of appetite and satiety: a randomised control‑controlled crossover trial. European Journal of Nutrition, 62. pp. 2205-2215. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-023-03136-6

Dahl, S. M., Rolfe, V., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. (2023) Gut microbial modulation by culinary herbs and spices. Food Chemistry, 409. 135286. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2022.135286

Eastwood, J., van Hemert, S., Poveda, C., Elmore, S. ORCID: https://orcid.org/0000-0002-2685-1773, Williams, C. ORCID: https://orcid.org/0000-0003-4452-671X, Lamport, D. ORCID: https://orcid.org/0000-0002-4592-0439 and Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635 (2023) The effect of probiotic bacteria on composition and metabolite production of faecal microbiota using in vitro batch cultures. Nutrients, 15 (11). 2563. ISSN 2072-6643 doi: https://doi.org/10.3390/nu15112563

Jackson, P. P. J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Theis, S., Van Harsselaar, J. and Rastall, R. A. ORCID: https://orcid.org/0000-0003-1775-5226 (2023) Effects of food matrix on the prebiotic efficacy of inulin-type fructans: a randomised trial. Beneficial Microbes, 14 (4). pp. 317-334. ISSN 1876-2891 doi: https://doi.org/10.1163/18762891-20220120

Jackson, P. P. J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, van Harsselaar, J., Theis, S. and Rastall, R. A. (2023) Oligofructose, 2'fucosyllactose and β-glucan in combination induce specific changes in microbial composition and short-chain fatty acid production compared to sole supplementation. Journal of Applied Microbiology, 134 (2). lxac069. ISSN 1364-5072 doi: https://doi.org/10.1093/jambio/lxac069

Jackson, P. P. J. ORCID: https://orcid.org/0000-0003-0098-4719, Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 and Rastall, R. A. (2023) Inulin‐type fructans and short‐chain fructooligosaccharides—their role within the food industry as fat and sugar replacers and texture modifiers—what needs to be considered! Food Science & Nutrition, 11 (1). pp. 17-38. ISSN 2048-7177 doi: https://doi.org/10.1002/fsn3.3040

Jackson, P. P. J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Williams, C. M. ORCID: https://orcid.org/0000-0003-4452-671X, Theis, S., van Harsselaar, J. and Rastall, R. A. (2023) Inulin-type fructans and 2'fucosyllactose alter both microbial composition and appear to alleviate stress-induced mood state in a working population compared to placebo (maltodextrin): the EFFICAD Trial, a randomized, controlled trial. The American Journal of Clinical Nutrition, 118 (5). pp. 938-955. ISSN 1938-3207 doi: https://doi.org/10.1016/j.ajcnut.2023.08.016

Kennedy, J. M. ORCID: https://orcid.org/0000-0001-9335-0808, De Silva, A., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. (2023) A review on the use of prebiotics in ulcerative colitis. Trends in Microbiology. ISSN 1878-4380 doi: https://doi.org/10.1016/j.tim.2023.11.007

Kitsiou, M., Purk, L., Gutierrez-Merino, J., Karatzas, K.-A., Klymenko, O. V. and Velliou, E. (2023) A systematic quantitative determination of the antimicrobial efficacy of grape seed extract against foodborne bacterial pathogens. Foods, 12 (5). 929. ISSN 2304-8158 doi: https://doi.org/10.3390/foods12050929

Monteagudo-Mera, A., Shalunkhe, A., Duhduh, A., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G. R., Pereira, D., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 and Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686 (2023) Impact of inorganic iron and haem on the human gut microbiota; an in vitro batch-culture approach. Frontiers in Microbiology, 14. 1074637. ISSN 1664-302X doi: https://doi.org/10.3389/fmicb.2023.1074637

Muchlisyiyah, J. ORCID: https://orcid.org/0000-0003-4963-4795, Shamsudin, R. ORCID: https://orcid.org/0000-0003-4849-9675, Kadir Basha, R., Shukri, R., How, S. ORCID: https://orcid.org/0000-0003-1087-0811, Niranjan, K. and Onwude, D. ORCID: https://orcid.org/0000-0002-2690-5823 (2023) Parboiled rice processing method, rice quality, health benefits, environment, and future perspectives: a review. Agriculture, 13 (7). 1390. ISSN 2077-0472 doi: https://doi.org/10.3390/agriculture13071390

Parker, C., Hunter, K. A., Johnson, M. A., Sharpe, G. R., Gibson, G. R., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Poveda, C., Cousins, B. and Williams, N. C. (2023) Effects of 24-week prebiotic intervention on self-reported upper respiratory symptoms, gastrointestinal symptoms, and markers of immunity in elite rugby union players. European Journal of Sport Science, 23 (11). pp. 2232-2239. ISSN 1746-1391 doi: https://doi.org/10.1080/17461391.2023.2216657

Spiteri, D. ORCID: https://orcid.org/0000-0002-9195-7291, Griffin, S. ORCID: https://orcid.org/0000-0003-0038-6399, Karatzas, K.-A., Scerri, C. ORCID: https://orcid.org/0000-0002-6499-234X and Valdramidis, V. P. ORCID: https://orcid.org/0000-0001-6486-3890 (2023) Escherichia coli K-12 transcriptomics for assessing the mechanism of action of high-power ultrasound. Microorganisms, 11 (11). 2768. ISSN 2076-2607 doi: https://doi.org/10.3390/microorganisms11112768

Virtanen, V., Puljula, E., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Woodward, M. J. and Karonen, M. (2023) NMR metabolomics and DNA sequencing of Escherichia coli and Staphylococcus aureus cultures treated with hydrolyzable tannins. Metabolites, 13 (3). 320. ISSN 2218-1989 doi: https://doi.org/10.3390/metabo13030320

Zainal Abidin, M. ORCID: https://orcid.org/0000-0002-2784-3732, Kourmentza, K. ORCID: https://orcid.org/0000-0002-2750-8539 and Niranjan, K. (2023) Chitin oligosaccharide N,N′-diacetylchitobiose (GlcNAc2) as antimicrobial coating against listeria monocytogenes on ready-to-eat shrimp. Sustainability, 15 (13). 10099. ISSN 2071-1050 doi: https://doi.org/10.3390/su151310099

2022

Abbas, M., Hayirli, Z., Drakesmith, H., Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686 and Lewis, M. C. (2022) Effects of iron deficiency and iron supplementation at the host-microbiota interface: could a piglet model unravel complexities of the underlying mechanisms? Frontiers in Nutrition, 9. 927754. ISSN 2296-861X doi: https://doi.org/10.3389/fnut.2022.927754

Gibbons, S. M., Gurry, T., Lampe, J. W., Chakrabarti, A., Dam, V., Everard, A., Goas, A., Gross, G., Kleerebezem, M., Lane, J., Maukonen, J., Penna, A. L. B., Pot, B., Valdes, A. M., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Weiss, A., Zanzer, Y. C., Venlet, N. V. and Miani, M. (2022) Perspective: leveraging the gut microbiota to predict personalized responses to dietary, prebiotic, and probiotic intervention. Advances in Nutrition, 13 (5). pp. 1450-1461. ISSN 2156-5376 doi: https://doi.org/10.1093/advances/nmac075

Gibson, G. R. (2022) Commentary on: prebiotic effects: metabolic and health benefits. British Journal of Nutrition, 127 (4). pp. 554-555. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114521004608

Jackson, P. P. J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 and Rastall, R. A. (2022) Determining the metabolic fate of human milk oligosaccharides: it may just be more complex than you think? Gut Microbiome, 3. e9. ISSN 2632-2897 doi: https://doi.org/10.1017/gmb.2022.8

Kean, I. R. L., Wagner, J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, De Goffau, M., Thurston, S., Clark, J. A., White, D. K., Ridout, J., Agrawal, S., Kayani, R., O’Donnell, R., Ramnarayan, P., Peters, M. J., Klein, N., Holmes, E., Parkhill, J., Baker, S. and Pathan, N. (2022) Profiling gut microbiota and bile acid metabolism in critically ill children. Scientific Reports, 12 (1). 10432. ISSN 2045-2322 doi: https://doi.org/10.1038/s41598-022-13640-0

Leng, J., McNally, S., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J., Proudman, C., Argo, C., Emery, S., La Ragione, R. and Eustace, R. (2022) Hay vs. haylage: forage type influences the equine urinary metabonome and faecal microbiota. Equine Veterinary Journal, 54 (3). pp. 614-625. ISSN 2042-3306 doi: https://doi.org/10.1111/evj.13456

Paliwal, D. ORCID: https://orcid.org/0000-0002-6891-0778, Hamilton, A. J., Barrett, G. A. ORCID: https://orcid.org/0000-0003-1509-0179, Alberti, F., Van Emden, H., Monteil, C. L., Machuline, T. H., Nauen, R., Wagstaff, C. ORCID: https://orcid.org/0000-0001-9400-8641, Bass, C. and Jackson, R. W. (2022) Identification of novel aphid-killing bacteria to protect plants. Microbial Biotechnology, 15 (4). pp. 1203-1220. ISSN 1751-7915 doi: https://doi.org/10.1111/1751-7915.13902

Ramos, C., Gibson, G. R., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Magistro, D., Kinnear, W. and Hunter, K. (2022) Systematic review of the effects of exercise and physical activity on the gut microbiome of older adults. Nutrients, 14 (3). 674. ISSN 2072-6643 doi: https://doi.org/10.3390/nu14030674

Sanabria, J. ORCID: https://orcid.org/0000-0003-0342-3386, Egan, S. ORCID: https://orcid.org/0000-0003-4395-4069, Masuda, R., Lee, A. J. ORCID: https://orcid.org/0000-0002-0355-7248, Gibson, G. R., Nicholson, J. K. ORCID: https://orcid.org/0000-0002-8123-8349, Wist, J. ORCID: https://orcid.org/0000-0002-3416-2572 and Holmes, E. (2022) Overview of the nomenclature and network of contributors to the development of bioreactors for human gut simulation using bibliometric tools: a fragmented landscape. Journal of Agricultural and Food Chemistry, 70 (37). pp. 11458-11467. ISSN 0021-8561 doi: https://doi.org/10.1021/acs.jafc.2c03597

Sanz Morales, P., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Robertson, M. D., Jackson, P. P. J. and Gibson, G. R. (2022) The potential role of human milk oligosaccharides in irritable bowel syndrome. Microorganisms, 10 (12). 2338. ISSN 2076-2607 doi: https://doi.org/10.3390/microorganisms10122338

2021

Aspinall, S. R. ORCID: https://orcid.org/0000-0002-1333-1664, Parker, J. K. ORCID: https://orcid.org/0000-0003-4121-5481 and Khutoryanskiy, V. V. ORCID: https://orcid.org/0000-0002-7221-2630 (2021) Role of mucoadhesive polymers in retention of toothpaste in the oral cavity. Colloids and Surfaces B: Biointerfaces, 208. 112104. ISSN 0927-7765 doi: https://doi.org/10.1016/j.colsurfb.2021.112104

Brighina, S., Poveda Turrado, C., Restuccia, C., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Fallico, B., Oruna-Concha, M. J. ORCID: https://orcid.org/0000-0001-7916-1592 and Arena, E. (2021) Detrimental effect on the gut microbiota of 1,2-dicarbonyl compounds after in vitro gastro-intestinal and fermentative digestion. Food Chemistry, 341. 128237. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2020.128237

Bulut, S. and Karatzas, K. A.G. (2021) Inactivation of Escherichia coli K12 in phosphate buffer saline and orange juice by high hydrostatic pressure processing combined with freezing. LWT-Food Science and Technology, 136 (1). 110313. ISSN 0023-6438 doi: https://doi.org/10.1016/j.lwt.2020.110313

Cohen Kadosh, K., Basso, M., Knytl, P., Johnstone, N., Lau, J. Y.F. and Gibson, G. R. (2021) Psychobiotic interventions for anxiety in young people: a systematic review and meta-analysis, with youth consultation. Translational Psychiatry, 11. 352. ISSN 2158-3188 doi: https://doi.org/10.1038/s41398-021-01422-7

Collins, S. M., Gibson, G. R., Kennedy, O. B. ORCID: https://orcid.org/0000-0003-3885-4872, Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Rowland, I. and Commane, D. M. (2021) Development of a prebiotic blend to influence in vitro fermentation effects, with a focus on propionate, in the gut. FEMS Microbiology Ecology, 97 (8). fiab101. ISSN 1574-6941 doi: https://doi.org/10.1093/femsec/fiab101

Dakheel, M. M. ORCID: https://orcid.org/0000-0002-1938-8098, Al-Bedhawi, M. A. A., Al-Mnaser, A. A., Woodward, M. J., Mora-Ortiz, M. and Rymer, C. ORCID: https://orcid.org/0000-0002-3535-4330 (2021) In vitro impact of condensed tannins on the caecal metabolites of chickens. Brazilian Journal of Veterinary Research and Animal Science, 58. e174733. ISSN 1413-9596 doi: https://doi.org/10.11606/issn.1678-4456.bjvras.2021.174733

Eastwood, J., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Van Hemert, S., Williams, C. ORCID: https://orcid.org/0000-0003-4452-671X and Lamport, D. ORCID: https://orcid.org/0000-0002-4592-0439 (2021) The effect of probiotics on cognitive function across the human lifespan: a systematic review. Neuroscience and Biobehavioral Reviews, 128. pp. 311-327. ISSN 0149-7634 doi: https://doi.org/10.1016/j.neubiorev.2021.06.032

Frost, J. N., Kit Tan, T., Abbas, M., Wideman, S. K., Bonadonna, M., Stoffel, N. U., Weay, K., Kronsteiner, B., Sits, G., Campagna, D. R., Duarte, T. L., Lopes, J. M., Shah, A., Armitage, A. E., Arezes, J., Jin Lim, P., Preston, A. E., Ahem, D., Teh, M., Naylor, C., Salio, M., Gileadi, U., Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686, Dunachie, S. J., Zimmermann, M. B., van der Klis, F. R. M., Cerundolo, V., Bannard, O., Draper, S. J., Townsend, A. R. M., Galy, B., Flamming, M. D., Lewis, M. C. and Drakesmith, H. (2021) Hepcidin-mediated hypoferremia disrupts immune responses to vaccination and infection. Med, 2 (2). pp. 164-179. ISSN 2666-6340 doi: https://doi.org/10.1016/j.medj.2020.10.004

Jauregi, P., Guo, Y. and Adeloye, J. B. (2021) Whey proteins-polyphenols interactions can be exploited to reduce astringency or increase solubility and stability of bioactives in foods. Food Research International, 141. 110019. ISSN 0963-9969 doi: https://doi.org/10.1016/j.foodres.2020.110019

Kaldis, F. (2021) ‘Steam explosion as a pretreatment method to improve biogas production from wheat straw’. PhD thesis, University of Reading. doi: https://doi.org/10.48683/1926.00099994

Karatzas, K. A. G., Lemmens - den Toom, N. A., Tassou, C. C., van Leeuwen, W. and van Belkum, A. (2021) Molecular characterization of piezotolerant and stress resistant mutants of Staphylococcus aureus. Journal of Applied Microbiology, 130 (3). pp. 901-912. ISSN 1364-5072 doi: https://doi.org/10.1111/jam.14832

Kourmentza, K., Gromada, X., Michael, N., Degraeve, C., Vanier, G., Ravallec, R., Coutte, F., Karatzas, K.-A. and Jauregi, P. (2021) Antimicrobial activity of lipopeptide biosurfactants against foodborne pathogen and food spoilage microorganisms and their cytotoxicity. Frontiers in Microbiology, 11. 561060. ISSN 1664-302X doi: https://doi.org/10.3389/fmicb.2020.561060

Liu, L., Poveda, C., Jenkins, P. E. ORCID: https://orcid.org/0000-0003-1673-2903 and Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 (2021) An in vitro approach to studying the microbial community and impact of pre and probiotics under anorexia nervosa related dietary restrictions. Nutrients, 13 (12). 4447. ISSN 2072-6643 doi: https://doi.org/10.3390/nu13124447

Munoz-Munoz, J., Ndeh, D., Fernandez-Julia, P., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Henrissat, B. and Gilbert, H. J. (2021) Sulfation of arabinogalactan proteins confers privileged nutrient status to Bacteroides plebeius. mBio, 12 (4). ISSN 2150-7511 doi: https://doi.org/10.1128/mBio.01368-21

Newland, G. A. I., Gibson, G. R., Jackson, F. L. and Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 (2021) Assessment of stool collection and storage conditions for in vitro human gut model studies. Journal of Microbiological Methods, 185. 106230. ISSN 0167-7012 doi: https://doi.org/10.1016/j.mimet.2021.106230

Osman, A., Zuffa, S., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Fagbodun, E., Zanos, P., Georgiou, P., Kitchen, I., Swann, J. and Bailey, A. (2021) Post-weaning A1/A2 b-casein milk intake modulates depressive-like behavior, brain mopioid receptors, and the metabolome of rats. iScience, 24 (9). ISSN 2589-0042 doi: https://doi.org/10.1016/j.isci.2021.103048

Pyle, S., Rastall, R. A. and Gibson, G. R. (2021) Metabolism of wheat dextrin, partially hydrolysed guar gum and insulin combined with either Bifidobacterium lactis or Lactobacillus acidophilus in an in vitro gut model fermentation. International Journal of Probiotics and Prebiotics, 16 (1). pp. 22-30. ISSN 1555-1431

Ryan, J. J. ORCID: https://orcid.org/0000-0001-6324-9186, Monteagudo-Mera, A., Contractor, N. and Gibson, G. R. (2021) Impact of 2′-fucosyllactose on gut microbiota composition in adults with chronic gastrointestinal conditions: batch culture fermentation model and pilot clinical trial findings. Nutrients, 13 (3). e938. ISSN 2072-6643 doi: https://doi.org/10.3390/nu13030938

Saeedullah, A., Khan, M. S., Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686, Iqbal, K., Ul-Haq, Z., Qadir, S. A., Khan, H., Iddrisu, I. and Shahzad, M. ORCID: https://orcid.org/0000-0001-6565-1777 (2021) Nutritional status of adolescent Afghan refugees living in Peshawar, Pakistan. Nutrients, 13 (9). 3072. ISSN 2072-6643 doi: https://doi.org/10.3390/nu13093072

Sayers, B. ORCID: https://orcid.org/0000-0003-2711-238X, Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 and Gibson, G. (2021) Exploring the potential of prebiotic and polyphenol-based dietary interventions for the alleviation of cognitive and gastrointestinal perturbations associated with military specific stressors. Journal of Functional Foods, 87. 104753. ISSN 1756-4646 doi: https://doi.org/10.1016/j.jff.2021.104753

Sorensen, K., Cawood, A. L., Gibson, G. R. ORCID: https://orcid.org/0000-0002-0566-0476, Cooke, L. H. and Stratton, R. J. (2021) Amino acid formula containing synbiotics in infants with cow’s milk protein allergy: a systematic review and meta-analysis. Nutrients, 13 (3). e935. ISSN 2072-6643 doi: https://doi.org/10.3390/nu13030935

Ta, L. P., Bujna, E., Kun, S., Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Khutoryanskiy, V. V. ORCID: https://orcid.org/0000-0002-7221-2630 (2021) Electrosprayed mucoadhesive alginate-chitosan microcapsules for gastrointestinal delivery of probiotics. International Journal of Pharmaceutics, 597. 120342. ISSN 0378-5173 doi: https://doi.org/10.1016/j.ijpharm.2021.120342

Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G. R. and Hunter, K. A. (2021) Mechanisms linking the human gut microbiome to prophylactic and treatment strategies for COVID-19. British Journal of Nutrition, 126 (2). pp. 219-227. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114520003980

Wang, Y., Cao, J., Sun, Y., Xing, Y., Pang, X., Chen, X., Fei, P., Li, Z., Cheng, Q., Kang, H. and Hu, X. (2021) Development and validation of a sensitive enzyme-linked immunosorbent assay for clonidine hydrochloride in pig urine and pork samples. Food and Agricultural Immunology, 32 (1). pp. 851-862. ISSN 1465-3443 doi: https://doi.org/10.1080/09540105.2021.2001439

2020

Abukhabta, S., Khalil Ghawi, S., Karatzas, K. A., Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402, McDougall, G., Allwood, J. W., Verrall, S., Lavery, S., Latimer, C., Pourshahidi, L. K., Lawther, R., O’Connor, G., Rowland, I. and Gill, C. I. R. (2020) Sulforaphane-enriched extracts from glucoraphanin-rich broccoli exert antimicrobial activity against gut pathogens in vitro and innovative cooking methods increase in vivo intestinal delivery of sulforaphane. European Journal of Nutrition. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-020-02322-0

Barnes, R. H. and Karatzas, K. A. G. (2020) Investigation into the antimicrobial activity of fumarate against Listeria monocytogenes and its mode of action under acidic conditions. International Journal of Food Microbiology, 324. 108614. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2020.108614

Craggs, M., Gibson, G., Whalley, P. and Collins, C. (2020) Bioaccessibility of difenoconazole in rice following industry standard processing and preparation procedures. Journal of Agricultural and Food Chemistry, 68 (37). pp. 10167-10173. ISSN 0021-8561 doi: https://doi.org/10.1021/acs.jafc.0c02648

Dakheel, M. M., Alkandari, F. A. H., Mueller-Harvey, I., Woodward, M. J. and Rymer, C. (2020) Antimicrobial in vitro activities of condensed tannin extracts on avian pathogenic Escherichia coli. Letters in Applied Microbiology, 70 (3). pp. 165-172. ISSN 1472-765X doi: https://doi.org/10.1111/lam.13253

Ekonomou, S. I., Bulut, S., Karatzas, K. A. G. and Boziaris, I. S. (2020) Inactivation of Listeria monocytogenes in raw and hot smoked trout fillets by high hydrostatic pressure processing combined with liquid smoke and freezing. Innovative Food Science & Emerging Technologies, 64. 102427. ISSN 1466-8564 doi: https://doi.org/10.1016/j.ifset.2020.102427

Harris, S., Powers, S., Monteagudo, A., Kosik, O., Lovegrove, A., Shewry, P. and Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 (2020) Determination of the prebiotic activity of wheat arabinogalactan peptide (AGP) using batch culture fermentation. European Journal of Nutrition, 59. pp. 297-307. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-019-01908-7

Henrique-Bana, F. C., Wang, X., Costa, G. N., Spinosa, W. A., Miglioranza, L. H. S., Scorletti, E., Calder, P. C., Byrne, C. D. and Gibson, G. (2020) In vitro effects of Bifidobacterium lactis-based synbiotics on human faecal bacteria. Food Research International, 128. 108776. ISSN 0963-9969 doi: https://doi.org/10.1016/j.foodres.2019.108776

Julien, L. A., Fau, C., Baron, F., Bonnassie, S., Guérin-Dubiard, C., Nau, F., Gautier, M., Karatzas, K.-A., Jan, S. and Andrews, S. ORCID: https://orcid.org/0000-0003-4295-2686 (2020) The three lipocalins of egg-white: only Ex-FABP inhibits siderophore-dependent iron sequestration by Salmonella Enteritidis. Frontiers in Microbiology, 11. 913. ISSN 1664-302X doi: https://doi.org/10.3389/fmicb.2020.00913

Kaldis, F., Cysneiros, D., Day, J., Karatzas, K.-A. G. and Chatzifragkou, A. ORCID: https://orcid.org/0000-0002-9255-7871 (2020) Anaerobic digestion of steam-exploded wheat straw and co-digestion strategies for enhanced biogas production. Applied Sciences, 10 (22). 8284. ISSN 2076-3417 doi: https://doi.org/10.3390/app10228284

Lawson, M. A. E., O'Neill, I. J., Kujawska, M., Gowrinadh Javvadi, S., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Flegg, Z., Chalklen, L. and Hall, L. J. (2020) Breast milk-derived human milk oligosaccharides promote Bifidobacterium interactions within a single ecosystem. ISME Journal, 14. pp. 635-648. ISSN 1751-7370 doi: https://doi.org/10.1038/s41396-019-0553-2

Leng, J., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J., Darby, A., La Ragione, R. and Proudman, C. (2020) "Bowel-on-the-bench:" proof-of-concept of a three stage, in vitro, fermentation model of the equine large intestine. Applied and Environmental Microbiology, 86 (1). e02093-19. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.02093-19

Paudyal, R., O'Byrne, C. P. and Karatzas, K.-A. (2020) Amino acids other than glutamate affect the expression of the GAD system in Listeria monocytogenes enhancing acid resistance. Food Microbiology, 90. 103481. ISSN 0740-0020 doi: https://doi.org/10.1016/j.fm.2020.103481

Poveda, C., Pereira, D. I. A., Lewis, M. and Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635 (2020) The impact of low-level iron supplements on the faecal microbiota of irritable bowel syndrome and healthy donors using in vitro batch cultures. Nutrients, 12 (12). 3819. ISSN 2072-6643 doi: https://doi.org/10.3390/nu12123819

Puljula, E., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Woodward, M. J. and Karonen, M. (2020) Antimicrobial activities of ellagitannins against Clostridiales perfringens, Escherichia coli, Lactobacillus plantarum and Staphylococcus aureus. Molecules, 25 (16). 3714. ISSN 1420-3049 doi: https://doi.org/10.3390/molecules25163714

Scott, K. P., Grimaldi, R., Cunningham, M., Sarbini, S. R., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Tang, M. L., Lee, J. C.-Y., Yau, Y. F., Ansell, J., Theis, S., Yang, K., Menon, R., Arfsten, J., Manurung, S., Gourineni, V. and Gibson, G. R. (2020) Developments in understanding and applying prebiotics in research and practice - an ISAPP conference paper. Journal of Applied Microbiology, 128 (4). pp. 934-948. ISSN 1364-5072 doi: https://doi.org/10.1111/jam.14424

Wang, X., Gibson, G. R., Sailer, M., Theis, S. and Rastall, R. A. (2020) Prebiotics inhibit proteolysis by gut bacteria in a host diet-dependent manner: a three-stage continuous in vitro gut model experiment. Applied and Environmental Microbiology, 86 (10). e02730-19. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.02730-19

2019

Alhinai, E. A., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Commane, D. M. (2019) The role of the gut microbiota in colorectal cancer causation. International Journal of Molecular Sciences, 20 (21). 5295. ISSN 1422-0067 doi: https://doi.org/10.3390/ijms20215295

Castelletto, V., Barnes, R. H., Karatzas, K.-A., Edwards-Gayle, C. J. C., Greco, F., Hamley, I. W. ORCID: https://orcid.org/0000-0002-4549-0926, Seitsonen, J. and Ruokolainen, J. (2019) Restructuring of lipid membranes by an arginine-capped peptide bolaamphiphile. Langmuir, 35 (5). pp. 1302-1311. ISSN 0743-7463 doi: https://doi.org/10.1021/acs.langmuir.8b01014

Charalampous, N., Grammatikopoulos, G., Kourmentza, C., Kornaros, M. and Dailianis, S. (2019) Effects of Burkholderia thailandensis rhamnolipids on the unicellular algae Dunaliella tertiolecta. Ecotoxicology and Environmental Safety, 182. 109413. ISSN 0147-6513 doi: https://doi.org/10.1016/j.ecoenv.2019.109413

Christoforidou, Z., Mora Ortiz, M., Poveda, C., Abbas, M., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Bailey, M. and Lewis, M. C. (2019) Sexual dimorphism in immune development and in response to nutritional intervention in neonatal piglets. Frontiers in Immunology, 10. 2705. ISSN 1664-3224 doi: https://doi.org/10.3389/fimmu.2019.02705

Hornsey, M., Betts, J. W., Mehat, J. W., Wareham, D. W., van Vliet, A. H. M., Woodward, M. J. and La Ragione, R. M. (2019) Characterization of a colistin-resistant Avian Pathogenic Escherichia coli ST69 isolate recovered from a broiler chicken in Germany. Journal of Medical Microbiology, 68. pp. 111-114. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.000882

Kandzija, N., Zhang, W., Motta-Mejia, C., Mhlomi, V., McGowan-Downey, J., James, T., Cerdeira, A. S., Tannetta, D., Sargent, I., Redman, C. W., Bastie, C. C. and Vatish, M. (2019) Placental extracellular vesicles express active dipeptidyl peptidase IV; levels are increased in gestational diabetes mellitus. Journal of extracellular vesicles, 8 (1). 1617000. ISSN 2001-3078 doi: https://doi.org/10.1080/20013078.2019.1617000

Kopsahelis, A., Kourmentza, C., Zafiri, C. and Kornaros, M. (2019) Life cycle assessment (LCA) of end-of-life dairy products (EoL-DPs) valorization via anaerobic co-digestion with agro-industrial wastes for biogas production. Journal of Chemical Technology and Biotechnology, 94 (11). pp. 3687-3697. ISSN 0268-2575 doi: https://doi.org/10.1002/jctb.6174

Kristek, A., Wiese, M., Heuer, P., Kosik, O., Schar, M. Y., Soycan, G., Alsharif, S., Kuhnle, G. G. C. ORCID: https://orcid.org/0000-0002-8081-8931, Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635 and Spencer, J. P. E. (2019) Oat bran, but not its isolated bioactive β-glucans or polyphenols, have a bifidogenic effect in an in vitro fermentation model of the gut microbiota. British Journal of Nutrition, 121 (5). pp. 549-559. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114518003501

Le Roy, C. I., Woodward, M. J., Ellis, R. J., La Ragione, R. M. and Claus, S. P. (2019) Antibiotic treatment triggers gut dysbiosis and modulates metabolism in a chicken model of gastro-intestinal infection. BMC Veterinary Research, 15. 37. ISSN 1746-6148 doi: https://doi.org/10.1186/s12917-018-1761-0

Monteagudo, A., Rastall, B., Gibson, G., Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Chatzifragkou, A. ORCID: https://orcid.org/0000-0002-9255-7871 (2019) Adhesion mechanisms mediated by probiotics and prebiotics and their potential impact on human health. Applied Microbiology and Biotechnology, 103. pp. 6463-6472. ISSN 0175-7598 doi: https://doi.org/10.1007/s00253-019-09978-7

Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Wagner, J., De Goffau, M., Thurston, S., Rodrigues Sabino, A., Zaher, S., White, D., Ridout, J., Peters, M. J., Ramnarayan, P., Branco, R. G., Torok, M. E., Valla, F., Meyer, R., Klein, N., Frost, G., Parkhill, J., Holmes, E. and Pathan, N. (2019) Multi-compartment profiling of cacterial and host metabolites identifies intestinal dysbiosis and its functional consequences in the critically ill child. Critical care medicine, 47 (9). e727-e734. ISSN 1530-0293 doi: https://doi.org/10.1097/CCM.0000000000003841

Zainal Abidin, M., Kourmentza, C., Karatzas, K. A. and Niranjan, K. (2019) Enzymatic hydrolysis of thermally pre‐treated chitin and antimicrobial activity of N,N'‐diacetylchitobiose. Journal of Chemical Technology and Biotechnology, 94 (8). pp. 2529-2536. ISSN 1097-4660 doi: https://doi.org/10.1002/jctb.6043

Zuluaga, D. L., Graham, N. S., Klinder, A., van Ommen Kloeke, A. E. E., Marcotrigiano, A. R., Wagstaff, C. ORCID: https://orcid.org/0000-0001-9400-8641, Verkerk, R., Sonnante, G. and Aarts, M. G. M. (2019) Overexpression of the MYB29 transcription factor affects aliphatic glucosinolate synthesis in Brassica oleracea. Plant Molecular Biology, 101 (1-2). pp. 65-79. ISSN 1573-5028 doi: https://doi.org/10.1007/s11103-019-00890-2

2018

Abdullah, W. Z. W., Mackey, B. M. and Karatzas, K.-A. G. (2018) High phenotypic variability among representative strains of common Salmonella enterica serovars with possible implications for food safety. Journal of Food Protection, 81 (1). pp. 93-104. ISSN 0362-028X doi: https://doi.org/10.4315/0362-028x.jfp-17-190

Alarifi, S., Bell, A. and Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635 (2018) In vitro fermentation of gum acacia - impact on the faecal microbiota. International Journal of Food Sciences and Nutrition, 69 (6). pp. 696-704. ISSN 1465-3478 doi: https://doi.org/10.1080/09637486.2017.1404970

Alemán, J. O., Bokulich, N. A., Swann, J. R., Walker, J. M., De Rosa, J. C., Battaglia, T., Costabile, A., Pechlivanis, A., Liang, Y., Breslow, J. L., Blaser, M. J. and Holt, P. R. (2018) Fecal microbiota and bile acid interactions with systemic and adipose tissue metabolism in diet-induced weight loss of obese postmenopausal women. Journal of Translational Medicine, 16 (1). 244. ISSN 1479-5876 doi: https://doi.org/10.1186/s12967-018-1619-z

Athersuch, T. J. and Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 (2018) NMR in environmental and nutritional research. In: Keun, H. C. (ed.) NMR-based Metabolomics. Royal Society of Chemistry, pp. 168-182. ISBN 9781849736435 doi: https://doi.org/10.1039/9781782627937-00168

Castelletto, V., Barnes, R. H., Karatzas, K.-A., Edwards-Gayle, C. J. C., Greco, F., Hamley, I. W. ORCID: https://orcid.org/0000-0002-4549-0926, Rambo, R., Seitsonen, J. and Ruokolainen, J. (2018) Arginine-containing surfactant-like peptides: interaction with lipid membranes and antimicrobial activity. Biomacromolecules, 19 (7). pp. 2782-2794. ISSN 1525-7797 doi: https://doi.org/10.1021/acs.biomac.8b00391

Christoforidou, Z., Burt, R., Mulder, I., Gill, B. P., Pluske, J., Kelly, D., Stokes, C. R., Bailey, M. and Lewis, M. C. (2018) Development of immune cells in the intestinal mucosa can be affected by intensive and extensive farm environments, and antibiotic use. Frontiers in Immunology, 9. 1061. ISSN 1664-3224 doi: https://doi.org/10.3389/fimmu.2018.01061

Grimaldi, R., Gibson, G. R., Vulevic, J., Giallourou, N., Castro-Mejía, J. L., Hansen, L. H., Gibson, E. L., Nielsen, D. S. and Costabile, A. (2018) A prebiotic intervention study in children with autism spectrum disorders (ASDs). Microbiome, 6 (1). 133. ISSN 2049-2618 doi: https://doi.org/10.1186/s40168-018-0523-3

Hoyles, L., Jiménez-Pranteda, M. L., Chilloux, J., Brial, F., Myridakis, A., Aranias, T., Magnan, C., Gibson, G. R., Sanderson, J. D., Nicholson, J. K., Gauguier, D., McCartney, A. L. and Dumas, M.-E. (2018) Metabolic retroconversion of trimethylamine N-oxide and the gut microbiota. Microbiome, 6. 73. ISSN 2049-2618 doi: https://doi.org/10.1186/s40168-018-0461-0

Huaman, J.-W., Mego, M., Manichanh, C., Cañellas, N., Cañueto, D., Segurola, H., Jansana, M., Malalgelada, C., Accarino, A., Vulevic, J., Tzortzis, G., Gibson, G., Saperas, E., Guarner, F. and Azpiroz, F. (2018) Effects of prebiotics vs a diet low in FODMAPS in patients with functional gut disorder. Gastroenterology, 155 (4). pp. 1004-1007. ISSN 0016-5085 doi: https://doi.org/10.1053/j.gastro.2018.06.045

Martin, G., Kolida, S., Marchesi, J. R., Want, E., Sidaway, J. E. and Swann, J. R. (2018) In vitro modeling of bile acid processing by the human fecal microbiota. Frontiers in Microbiology, 9. 1153. ISSN 1664-302X doi: https://doi.org/10.3389/fmicb.2018.01153

Monteagudo, A., Chatzifragkou, A. ORCID: https://orcid.org/0000-0002-9255-7871, Kosik, O., Gibson, G., Lovegrove, A., Shewry, P. and Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 (2018) Evaluation of the prebiotic potential of arabinoxylans extracted from wheat distillers’ dried grains with solubles (DDGS) and in-process samples. Applied Microbiology and Biotechnology, 102 (17). pp. 7577-7587. ISSN 0175-7598 doi: https://doi.org/10.1007/s00253-018-9171-6

Paudyal, R., Barnes, R. H. and Karatzas, K. A. G. (2018) A novel approach in acidic disinfection through inhibition of acid resistance mechanisms; Maleic acid-mediated inhibition of glutamate decarboxylase activity enhances acid sensitivity of Listeria monocytogenes. Food Microbiology, 69. pp. 96-104. ISSN 0740-0020 doi: https://doi.org/10.1016/j.fm.2017.07.013

Srisukchayakul, P., Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Karatzas, K. A. (2018) Study on the effect of citric acid adaptation toward the subsequent survival of Lactobacillus plantarum NCIMB 8826 in low pH fruit juices during refrigerated storage. Food Research International, 111. pp. 198-204. ISSN 0963-9969 doi: https://doi.org/10.1016/j.foodres.2018.05.018

Vulevic, J., Tzortzis, G., Juric, A. and Gibson, G. R. (2018) Effect of a prebiotic galactooligosaccharide mixture (B-GOS®) on gastrointestinal symptoms in adults selected from a general population who suffer with bloating, abdominal pain, or flatulence. Neurogastroenterology & Motility, 30 (11). e13440. ISSN 1365-2982 doi: https://doi.org/10.1111/nmo.13440

2017

Abdullah, W. Z. W., Mackey, B. M. and Karatzas, K.-A. G. (2017) Biofilm formation of Salmonella enterica and the central role of RpoS sigma factor in stress resistance. Malaysian Applied Biology, 46 (3). pp. 59-65. ISSN 0126-8643

Abdullah, W. Z. W., Mackey, B. M. and Karatzas, K.-A. G. (2017) Determination of the relative effects of temperature, pH and water activity in food systems: a meta-analysis study. Malaysian Applied Biology, 46 (3). pp. 67-70. ISSN 0126-8643

Alqurashi, R. M., Alarifi, S. N., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Costabile, A. F., Rowland, I. R. and Commane, D. M. (2017) In vitro approaches to assess the effects of açai (Euterpe oleracea) digestion on polyphenol availability and the subsequent impact on the faecal microbiota. Food Chemistry, 234. pp. 190-198. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2017.04.164

Basson, A. R. and Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 (2017) Metabolic phenotyping for understanding the gut microbiome and host metabolic interplay. Emerging Topics in Life Sciences, 1 (4). pp. 325-332. ISSN 2397-8562 doi: https://doi.org/10.1042/ETLS20170079

Beaumont, M., Portune, K. J., Steuer, N., Lan, A., Cerrudo, V., Audebert, M., Dumont, F., Mancano, G., Khodorova, N., Andriamihaja, M., Airinei, G., Tomé, D., Benamouzig, R., Davilla, A.-M., Claus, S. P., Sanz, Y. and Blachier, F. (2017) Quantity and source of dietary protein influence metabolite production by gut microbiota and rectal mucosa gene expression: a randomized, parallel, double-blind trial in overweight humans. American Journal of Clinical Nutrition, 106 (4). pp. 1005-1019. ISSN 0002-9165 doi: https://doi.org/10.3945/ajcn.117.158816

Blatchford, P., Stoklosinski, H., Eady, S., Wallace, A., Butts, C., Gearry, R., Gibson, G. and Ansell, J. (2017) Consumption of kiwifruit capsules increases Faecalibacterium prausnitzii abundance in functionally constipated individuals: a randomised controlled human trial. Journal of Nutritional Science, 6. e52. ISSN 2048-6790 doi: https://doi.org/10.1017/jns.2017.52

Brouns, F., Delzenne, N. and Gibson, G. (2017) The dietary fibers- FODMAPs controversy. Cereal Foods World, 62 (3). pp. 98-103. ISSN 0146-6283 doi: https://doi.org/10.1094/CFW-62-3-0098

Carter, A., Adams, M., La Ragione, R. M. and Woodward, M. J. (2017) Colonisation of poultry by Salmonella Enteritidis S1400 is reduced by combined administration of Lactobacillus salivarius 59 and Enterococcus faecium PXN-33. Veterinary Microbiology, 199. pp. 100-107. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2016.12.029

Chekmeneva, E., dos Santos Correia, G., Chan, Q., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Tin, A., Young, J. H., Elliott, P., Nicholson, J. K. and Holmes, E. (2017) Optimization and application of direct infusion nanoelectrospray HRMS method for large-scale urinary metabolic phenotyping in molecular epidemiology. Journal of Proteome Research, 16 (4). pp. 1646-1658. ISSN 1535-3907 doi: https://doi.org/10.1021/acs.jproteome.6b01003

Claus, S. (2017) Inulin prebiotic: is it all about bifidobacteria? Gut, 66 (11). pp. 1883-1884. ISSN 1468-3288 doi: https://doi.org/10.1136/gutjnl-2017-313800

Claus, S. P. (2017) Will gut microbiota help design the next generation of GLP1-based therapies for type 2 diabetes? Cell Metabolism, 26 (1). pp. 6-7. ISSN 1550-4131 doi: https://doi.org/10.1016/j.cmet.2017.06.009

Costabile, A., Bergillos-Meca, T., Raskinkangas, P., Korpela, K., de Vos, W. M. and Gibson, G. R. (2017) Effects of soluble corn fiber alone or in synbiotic combination with Lactobacillus rhamnosus GG and the Pilus-deficient derivative GG-PB12 on fecal microbiota, metabolism, and markers of immune function: a randomized, double-blind, placebo-controlled, crossover study in healthy elderly (Saimes study). Frontiers in Immunology, 8. 1443. ISSN 1664-3224 doi: https://doi.org/10.3389/fimmu.2017.01443

Costabile, A., Buttarazzi, I., Kolida, S., Quercia, S., Baldini, J., Swann, J. R., Brigidi, P. and Gibson, G. R. (2017) An in vivo assessment of the cholesterol-lowering efficacy of Lactobacillus plantarum ECGC 13110402 in normal to mildly hypercholesterolaemic adults. PLOS ONE, 12 (12). e0187964. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0187964

El Halfawy, N. M., El-Naggar, M. Y. and Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686 (2017) Complete genome sequence of Lactobacillus plantarum 10CH, a potential probiotic lactic acid bacterium with potent antimicrobial aActivity. Genome announcements, 5 (48). e01398-17. ISSN 2169-8287 doi: https://doi.org/10.1128/genomeA.01398-17

Gibson, G. R., Hutkins, R., Sanders, M. E., Prescott, S. L., Reimer, R. A., Salminen, S. J., Scott, K., Stanton, C., Swanson, K. S., Cani, P. D., Verbeke, K. and Reid, G. (2017) Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics. Nature Reviews in Gastroenterology and Hepatology, 14. pp. 491-502. ISSN 1759-5045 doi: https://doi.org/10.1038/nrgastro.2017.75

Grimaldi, R., Cela, D., Swann, J. R., Vulevic, J., Gibson, G. R., Tzortzis, G. and Costabile, A. (2017) In vitro fermentation of B-GOS: impact on faecal bacterial populations and metabolic activity in autistic and non-autistic children. FEMS Microbiology Ecology, 93 (2). fiw233. ISSN 1574-6941 doi: https://doi.org/10.1093/femsec/fiw233

Guo, Y., Harris, P., Kaur, A., Pastrana, L. and Jauregi, P. (2017) Characterisation of β-lactoglobulin nanoparticles and their binding to caffeine. Food Hydrocolloids, 71. pp. 85-93. ISSN 0268-005X doi: https://doi.org/10.1016/j.foodhyd.2017.04.027

Hartmann, K., Licitra, G., Eugster-Meier, E., Fröhlich-Wyder, M.-T., Jakob, E., Wechsler, D., Maubois, J. L., Karatzas, K.-A., Bintsis, T., Alichanidis, E., Morales, M. B. L., Berthier, F., Uzunsoy, İ., Özer, B. and Ardö, Y. (2017) Hard cheeses. In: Global Cheesemaking Technology: Cheese Quality and Characteristics. John Wiley & Sons, Ltd, pp. 204-246. ISBN 9781119046158 doi: https://doi.org/10.1002/9781119046165.ch2

Le Roy, C. I., Passey, J. L., Woodward, M. J., La Ragione, R. M. and Claus, S. P. (2017) Metabonomics-based analysis of Brachyspira pilosicoli's response to tiamulin reveals metabolic activity despite significant growth inhibition. Anaerobe, 45. pp. 71-77. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2017.03.018

Ledward, D. A. and Hopkins, D. L. (2017) Meat science from 1976: a history of the journal. Meat Science, 132. pp. 29-34. ISSN 0309-1740 doi: https://doi.org/10.1016/j.meatsci.2017.04.242

Lewis, M. C. (2017) The gut-associated lymphoid system. In: Calder, P. C. and Kulkarni, A. D. (eds.) Nutrition, Immunity and Infection. CRC Press, Boca Raton, USA, pp. 19-32, Chapter 2. ISBN 9781482253979

Lewis, M. C., Merrifield, C. A., Berger, B., Cloarec, O., Duncker, S., Mercenier, A., Nicholson, J. K., Holmes, E. and Bailey, M. (2017) Early intervention with Bifidobacterium lactis NCC2818 modulates the host-microbe interface independent of the sustained changes induced by the neonatal environment. Scientific reports, 7. 3510. ISSN 2045-2322 doi: https://doi.org/10.1038/s41598-017-05689-z

Liu, Y., Gibson, G. R. and Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 (2017) A three-stage continuous culture approach to study the impact of probiotics, prebiotics and fat intake on faecal microbiota relevant to an over 60s population. Journal of Functional Foods, 32. pp. 238-247. ISSN 1756-4646 doi: https://doi.org/10.1016/j.jff.2017.02.035

Mego, M., Accarino, A., Tzortzis, G., Vulevic, J., Gibson, G., Guarner, F. and Azpiroz, F. (2017) Colonic gas homeostasis: mechanisms of adaptation following HOST-G904 galactooligosaccharide use in humans. Neurogastroenterology and Motility, 29 (9). e13080. ISSN 1365-2982 doi: https://doi.org/10.1111/nmo.13080

Mego, M., Manichanh, C., Accarino, A., Campos, D., Pozuelo, M., Varela, E., Vulevic, J., Tzortzis, G., Gibson, G., Guarner, F. and Azpiroz, F. (2017) Metabolic adaptation of colonic microbiota to galactooligosaccharides: a proof-of-concept-study. Alimentary Pharmacology & Therapeutics, 45 (5). pp. 670-680. ISSN 1365-2036 doi: https://doi.org/10.1111/apt.13931

Mills, C. E., Flury, A., Marmet, C., Poquet, L., Rimaldi, S. F., Sartori, C., Rexhag, E., Brenner, R., Allman, Y., Zimmerman, D., Gibson, G. R., Mottram, D. S., Oruna-Concha, M.-J. ORCID: https://orcid.org/0000-0001-7916-1592, Actis-Goretta, L. and Spencer, J. P. E. (2017) Mediation of coffee-induced improvements in human vascular function by chlorogenic acids and its metabolites: two randomized, controlled, crossover intervention trials. Clinical Nutrition, 36 (6). pp. 1520-1529. ISSN 0261-5614 doi: https://doi.org/10.1016/j.clnu.2016.11.013

Mora Ortiz, M. and Claus, S. P. (2017) Choline theft-an inside job. Cell Metabolism, 22 (3). pp. 253-255. ISSN 1550-4131 doi: https://doi.org/10.1016/j.chom.2017.08.017

Morales, M. B. L., Ardö, Y., Berthier, F., Karatzas, K.-A. G. and Bintsis, T. (2017) Blue-veined cheeses. In: Global Cheesemaking Technology: Cheese Quality and Characteristics. John Wiley & Sons, Ltd, pp. 415-435. ISBN 9781119046158 doi: https://doi.org/10.1002/9781119046165.ch11

Parkinson, J. R. C., Wijeyesekera, A. D. ORCID: https://orcid.org/0000-0001-6151-5065, Hyde, M. J., Singhal, A., Lucas, A., Holmes, E. and Modi, N. (2017) Early preterm nutrition and the urinary metabolome in young adult life: follow-up of a randomised controlled trial. BMJ Paediatrics Open, 1 (1). e000192. ISSN 2399-9772 doi: https://doi.org/10.1136/bmjpo-2017-000192

Saman, P., Tuohy, K. M., Vázquez, J. A., Gibson, G. and Pandiella, S. S. (2017) In vitro evaluation of prebiotic properties derived from rice bran obtained by debranning technology. International Journal of Food Sciences and Nutrition, 68 (4). pp. 421-428. ISSN 1465-3478 doi: https://doi.org/10.1080/09637486.2016.1258045

Snell , C. (2017) Dissecting the role of the response regulator SAC29 in Brassica species. PhD thesis, University of Reading.

Spiteri, D., Chot-Plassot, C., Sclear, J., Karatzas, K. A., Scerri, C. and Valdramidis, V. (2017) Ultrasound processing of liquid system(s) and its antimicrobial mechanism of action. Letters in Applied Microbiology, 65 (4). pp. 313-318. ISSN 0266-8254 doi: https://doi.org/10.1111/lam.12776

Tang, Y., Cawthraw, S., Bagnall, M. C., Gielbert, A. J., Woodward, M. J. and Petrovska, L. (2017) Identification of differentially temperature regulated virulence factors of Campylobacter jejuni and tested in Galleria mellonella. AIMS Microbiology, 3 (4). pp. 885-898. ISSN 2471-1888 doi: https://doi.org/10.3934/microbiol.2017.4.885

2016

Baker, L., Lanz, B., Andreola, F., Ampuero, J., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Holmes, E. and Deutz, N. (2016) New technologies – new insights into the pathogenesis of hepatic encephalopathy. Metabolic Brain Disease, 31 (6). pp. 1259-1267. ISSN 1573-7365 doi: https://doi.org/10.1007/s11011-016-9906-y

Bindels, L. B., Neyrinck, A. M., Claus, S. P., Le Roy, C. I., Grangette, C., Pot, B., Martinez, I., Walter, J., Cani, P. D. and Delzenne, N. M. (2016) Synbiotic approach restores intestinal homeostasis and prolongs survival in leukaemia mice with cachexia. ISME Journal, 10 (6). pp. 1456-1470. ISSN 1751-7370 doi: https://doi.org/10.1038/ismej.2015.209

Boura, M., Keating, C., Royet, K., Paudyal, R., O’Donoghue, B., O'Byrne, C. P. and Karatzas, K. A. G. (2016) Loss of SigB in Listeria monocytogenes strains EGD-e and 10403S leads to hypersensitivity to hydrogen peroxide in stationary phase under aerobic conditions. Applied and Environmental Microbiology, 82 (15). pp. 4584-4591. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.00709-16

Claus, S. P., Guillou, H. and Ellero-Simatos, S. (2016) The gut microbiota: a major player in the toxicity of environmental pollutants? npj Biofilms and Microbiomes, 2. 16003. ISSN 2055-5008 doi: https://doi.org/10.1038/npjbiofilms.2016.3

Cordoni, G., Woodward, M. J., Wu, H., Alanazi, M., Wallis, T. and La Ragione, R. M. (2016) Comparative genomics of European Avian Pathogenic E. coli (APEC). BMC Genomics, 17 (1). 960. ISSN 1471-2164 doi: https://doi.org/10.1186/s12864-016-3289-7

Costabile, A., Deaville, E. R., Morales, A. M. and Gibson, G. R. (2016) Prebiotic potential of a maize-based soluble fibre and impact of dose on the human gut microbiota. PLoS ONE, 11 (1). e0144457. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0144457

Day, M. J., Rodriguez, I., van Essen-Zandbergen, A., Dierikx, C., Kadlec, K., Schink, A. K., Wu, G., Chattaway, M. A., DoNascimento, V., Wain, J., Helmuth, R., Guerra, B., Schwarz, S., Threlfall, J., Woodward, M. J., Coldham, N., Mevius, D. and Woodford, N. (2016) Diversity of STs, plasmids and ESBL genes among Escherichia coli from humans, animals and food in Germany, the Netherlands and the UK. Journal of Antimicrobial Chemotherapy, 71 (5). pp. 1178-1182. ISSN 1460-2091 doi: https://doi.org/10.1093/jac/dkv485

Farshim, P., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Chakrabarti, B. ORCID: https://orcid.org/0000-0002-6649-7895, Givens, I., Saddy, D. ORCID: https://orcid.org/0000-0001-8501-6076, Kitchen, I., Swann, J. R. and Bailey, A. (2016) Maternal weaning modulates emotional behavior and regulates the gut-brain axis. Scientific Reports, 6. 21958. ISSN 2045-2322 doi: https://doi.org/10.1038/srep21958

Fekete, Á. A., Givens, D. I. and Lovegrove, J. A. ORCID: https://orcid.org/0000-0001-7633-9455 (2016) Can milk proteins be a useful tool in the management of cardiometabolic health? An updated review of human intervention trials. Proceedings of the Nutrition Society, 75 (3). pp. 328-341. ISSN 1475-2719 doi: https://doi.org/10.1017/S0029665116000264

Freire-Martin, I., Thomas, C. M., Laing, E., AboOun, M., La Ragione, R. M. and Woodward, M. J. (2016) Curing vector for IncI1 plasmids and its use to provide evidence for a metabolic burden of IncI1 CTX-M-1 plasmid pIFM3791 on Klebsiella pneumoniae. Journal of Medical Microbiology, 65 (7). pp. 611-618. ISSN 1473-5644 doi: https://doi.org/10.1099/jmm.0.000271

Frej, A. D., Clark, J., Le Roy, C., Lilla, S., Thomason, P., Otto, G. P., Churchill, G., Insall, R., Claus, S. P., Hawkins, P., Stephens, L. and Williams, R. S. B. (2016) The inositol-3-phosphate synthase biosynthetic enzyme has distinct catalytic and metabolic roles. Molecular and cellular biology, 36 (10). pp. 1464-1479. ISSN 1098-5549 doi: https://doi.org/10.1128/MCB.00039-16

Grimaldi, R., Swann, J. R., Vulevic, J., Gibson, G. R. and Costabile, A. (2016) Fermentation properties and potential prebiotic activity of Bimuno® galacto-oligosaccharide (65 % galacto-oligosaccharide content) on in vitro gut microbiota parameters. British Journal of Nutrition, 116 (3). pp. 480-486. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114516002269

Guergoletto, K. B., Costabile, A., Flores, G., Garcia, S. and Gibson, G. R. (2016) In vitro fermentation of juçara pulp (Euterpe edulis) by human colonic microbiota. Food Chemistry, 196. pp. 251-258. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2015.09.048

Hayward, M. R., Petrovska, L., Jansen, V. A. A. and Woodward, M. (2016) Population structure and associated phenotypes of Salmonella enterica serovars Derby and Mbandaka overlap with host range. BMC Microbiology, 16 (1). Article 15. ISSN 1471-2180 doi: https://doi.org/10.1186/s12866-016-0628-4

Jackson, F., Georgakopoulou, N., Kaluarachchi, M., Kyriakides, M., Andreas, N., Przysiezna, N., Hyde, M. J., Modi, N., Nicholson, J. K., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065 and Holmes, E. (2016) Development of a pipeline for exploratory metabolic profiling of infant urine. Journal of Proteome Research, 15 (9). pp. 3432-3440. ISSN 1535-3907 doi: https://doi.org/10.1021/acs.jproteome.6b00234

Kourkoutas, Y., Chorianopoulos, N., Karatzas, K. A. G. and Banat, I. M. (2016) Bioactive natural products 2016. BioMed Research International, 2016. 9749305. ISSN 2314-6141 doi: https://doi.org/10.1155/2016/9749305

Kourkoutas, Y., Chorianopoulos, N., Nisiotou, A., Valdramidis, V. P. and Karatzas, K. A. G. (2016) Editorial. BioMed research international, 2016. pp. 1-2. ISSN 2314-6133 doi: https://doi.org/10.1155/2016/9160375

Le Roy, C. I., Mappley, L. J., La Ragione, R. M., Woodward, M. J. and Claus, S. P. (2016) NMR-based metabolic characterization of chicken tissues and biofluids: a model for avian research. Metabolomics, 12 (10). 157. ISSN 1573-3890 doi: https://doi.org/10.1007/s11306-016-1105-7

Likotrafiti, E., Tuohy, K. M., Gibson, G. R. and Rastall, R. A. (2016) Antimicrobial activity of selected synbiotics targeted for the elderly against pathogenic Escherichia coli strains. International Journal of Food Sciences and Nutrition, 67 (2). pp. 83-91. ISSN 1465-3478 doi: https://doi.org/10.3109/09637486.2015.1134444

Liu, Y., Gibson, G. R. and Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 (2016) Impact of high fat diets, prebiotics and probiotics on gut microbiota and immune function, with relevance to elderly populations. Nutrition and Aging, 3 (2-4). pp. 171-192. ISSN 1879-7725 doi: https://doi.org/10.3233/NUA-150058

Liu, Y., Gibson, G. R. and Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 (2016) An in vitro approach to study effects of prebiotics and probiotics on the faecal microbiota and selected immune parameters relevant to the elderly. PLoS ONE, 11 (9). e0162604. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0162604

Matysik, S., Le Roy, C. I., Liebisch, G. and Claus, S. P. (2016) Metabolomics of fecal samples: a practical consideration. Trends in Food Science and Technology, 57. pp. 244-255. ISSN 0924-2244 doi: https://doi.org/10.1016/j.tifs.2016.05.011

Merrifield, C. A., Lewis, M. C., Berger, B., Cloarec, O., Heinzmann, S. S., Charton, F., Krause, L., Levin, N. S., Duncker, S., Mercenier, A., Holmes, E., Bailey, M. and Nicholson, J. K. (2016) Neonatal environment exerts a sustained influence on the development of the intestinal microbiota and metabolic phenotype. ISME Journal, 10 (1). pp. 145-157. ISSN 1751-7370 doi: https://doi.org/10.1038/ismej.2015.90

Mora-Ortiz, M., Swain, M. T., Vickers, M. J., Hegarty, M. J., Kelly, R., Smith, L. M. J. and Skøt, L. (2016) De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia. BMC Genomics, 17 (1). 756. ISSN 1471-2164 doi: https://doi.org/10.1186/s12864-016-3083-6

Paudyal, R. and Karatzas, K.-A. G. (2016) Stress adaptation of Listeria monocytogenes in acidic ready-to-eat products. In: Kotzekidou, P. (ed.) Food Hygiene and Toxicology in Ready-to-Eat Foods. Academic Press, London, pp. 167-182. ISBN 9780128019160 doi: https://doi.org/10.1016/B978-0-12-801916-0.00010-8

Pedersen, C., Gallgher, E., Horton, F., Ellis, R. J., Ijaz, U. Z., Wu, H., Jaiyeola, E., Diribe, O., Duparc, T., Cani, P. D., Gibson, G. R., Hinton, P., Wright, J., La Ragione, R. and Robertson, M. D. (2016) Host-microbiome interactionsin human type 2 diabetes following prebiotic fibre (galactooligosaccharide) intake. British Journal of Nutrition, 116 (11). pp. 1869-1877. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114516004086

Pérez-López, E., Cela, D., Costabile, A., Mateos-Aparicio, I. and Rupérez, P. (2016) In vitro fermentability and prebiotic potential of soyabean Okara by human faecal microbiota. British Journal of Nutrition, 116 (06). pp. 1116-1124. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114516002816

Rodrigues, D., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Sousa, S., Rocha-Santos, T. A. P., Duarte, A. C., Freitas, A. C. and Gomes, A. M. P. (2016) In vitro fermentation and prebiotic potential of selected extracts from seaweeds and mushrooms. LWT Food Science and Technology, 73. pp. 131-139. ISSN 0023-6438 doi: https://doi.org/10.1016/j.lwt.2016.06.004

2015

Amiot, A., Dona, A. C., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Tournigand, C., Baumgaertner, I., Lebaleur, Y., Sobhani, I. and Holmes, E. (2015) 1H NMR spectroscopy of fecal extracts enables detection of advanced colorectal neoplasia. Journal of Proteome Research, 14 (9). pp. 3871-3881. ISSN 1535-3907 doi: https://doi.org/10.1021/acs.jproteome.5b00277

Andreas, N. J., Hyde, M. J., Gomez‐Romero, M., Lopez-Gonzalvez, M. A., Villaseñor, A., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Barbas, C., Modi, N., Holmes, E. and Garcia-Perez, I. (2015) Multiplatform characterization of dynamic changes in breast milk during lactation. Electrophoresis, 36 (18). pp. 2269-2285. ISSN 0173-0835 doi: https://doi.org/10.1002/elps.201500011

Bergillos-Meca, T., Costabile, A., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Moreno-Montoro, M., Ruiz-Bravo, A. and Ruiz-López, M. D. (2015) In vitro evaluation of the fermentation properties and potential probiotic activity of Lactobacillus plantarum C4 in batch culture systems. LWT-Food Science and Technology, 60 (1). pp. 420-426. ISSN 0023-6438 doi: https://doi.org/10.1016/j.lwt.2014.08.006

Blatchford, P., Bentley-Hewitt, K. L., Stoklosinski, H., McGhie, T., Gearry, R., Gibson, G. and Ansell, J. (2015) In vitro characterisation of the fermentation profile and prebiotic capacity of gold-fleshed kiwifruit. Beneficial Microbes, 6 (6). pp. 829-839. ISSN 1876-2883 doi: https://doi.org/10.3920/BM2015.0006

Blatchford, P., Stoklosinski, H., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J., Gibson, G., Gearry, R. and Ansell, J. (2015) Kiwifruit fermentation drives positive gut microbial and metabolic changes irrespective of initial microbiota composition. Bioactive Carbohydrates and Dietary Fibre, 6 (1). pp. 37-45. ISSN 2212-6198 doi: https://doi.org/10.1016/j.bcdf.2015.07.001

Chambers, E. S., Viardot, A., Psichas, A., Morrison, D. J., Murphy, K. G., Zac-Varghese, S. E. K., Macdougall, K., Preston, T., Tedford, C., Finlayson, G. S., Blundell, J. E., Bell, J. D., Thomas, E. L., Mt-Isa, S., Ashby, D., Gibson, G. R., Kolida, S., Dhillo, W. S., Bloom, S. R., Morley, W., Clegg, S. and Frost, G. (2015) Effects of targeted delivery of propionate to the human colon on appetite regulation, body weight maintenance and adiposity in overweight adults. Gut, 64 (11). pp. 1744-1754. ISSN 1468-3288 doi: https://doi.org/10.1136/gutjnl-2014-307913

Chekmeneva, E., Correia, G., Denes, J., Gomez-Romero, M., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Perenyi, D. R., Koot, Y., Boomsma, C., Want, E. J., Dixon, P. H., Macklon, N. S., Chan, Q., Takats, Z., Nicholson, J. K. and Holmes, E. (2015) Development of nanoelectrospray high resolution isotope dilution mass spectrometry for targeted quantitative analysis of urinary metabolites: application to population profiling and clinical studies. Analytical Methods, 7 (12). pp. 5122-5133. ISSN 1759-9679 doi: https://doi.org/10.1039/c5ay00850f

Correia, G. D., Ng, K. W., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Gala-Peralta, S., Williams, R., MacCarthy-Morrogh, S., Jiménez, B., Inwald, D., Macrae, D., Frost, G., Holmes, E. and Pathan, N. (2015) Metabolic profiling of children undergoing surgery for congenital heart disease. Critical Care Medicine, 43 (7). pp. 1467-1476. ISSN 1530-0293 doi: https://doi.org/10.1097/CCM.0000000000000982

Costabile, A., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Tzortzis, G., Vulevic, J., Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Gibson, G. R. (2015) Effects of orange juice formulation on prebiotic functionality using an in vitro colonic model sytem. PLoS ONE, 10 (3). e0121955. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0121955

Costabile, A., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Tzortzis, G., Vulevic, J., Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Gibson, G. (2015) Development of a bread delivery vehicle for dietary prebiotics to enhance food functionality targeted at those with metabolic syndrome. Gut Microbes, 6 (5). pp. 300-309. ISSN 1949-0984 doi: https://doi.org/10.1080/19490976.2015.1064577

Eid, N., Osmanova, H., Natchez, C., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Costabile, A., Gibson, G., Rowland, I. and Spencer, J. P.E. (2015) Impact of palm date consumption on microbiota growth and large intestinal health: a randomised, controlled, cross-over, human intervention study. British Journal of Nutrition, 114 (8). pp. 1226-1236. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114515002780

Elliott, P., Posma, J. M., Chan, Q., Garcia-Perez, I., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Bictash, M., Ebbels, T. M.D., Ueshima, H., Zhao, L., van Horn, L., Daviglus, M., Stamler, J., Holmes, E. and Nicholson, J. K. (2015) Urinary metabolic signatures of human adiposity. Science Translational Medicine, 7 (285). 285ra62. ISSN 1946-6242 doi: https://doi.org/10.1126/scitranslmed.aaa5680

Escalona, E. E., Leng, J., Dona, A. C., Merrifield, C. A., Holmes, E., Proudman, C. J. and Swann, J. R. (2015) Dominant components of the Thoroughbred metabolome characterised by 1H‐NMR spectroscopy: a metabolite atlas of common biofluids. Equine Veterinary Journal, 47 (6). pp. 721-730. ISSN 2042-3306 doi: https://doi.org/10.1111/evj.12333

Hayward, M. R., AbuOun, M., Woodward, M. J. and Jansen, V. A. A. (2015) Temperature and oxygen dependent metabolite utilization by Salmonella enterica Serovars Derby and Mbandaka. PLoS ONE, 10 (3). e0120450. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0120450

Hobden, M. R., Guérin-Deremaux, L., Rowland, I., Gibson, G. R. and Kennedy, O. B. ORCID: https://orcid.org/0000-0003-3885-4872 (2015) Potential anti-obesogenic properties of non-digestible carbohydrates: specific focus on resistant dextrin. Proceedings of the Nutrition Society, 74 (3). pp. 258-267. ISSN 0029-6651 doi: https://doi.org/10.1017/S0029665115000087

Holmes, E., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Taylor-Robinson, S. D. and Nicholson, J. K. (2015) The promise of metabolic phenotyping in gastroenterology and hepatology. Nature Reviews in Gastroenterology and Hepatology, 12 (8). pp. 458-471. ISSN 1759-5045 doi: https://doi.org/10.1038/nrgastro.2015.114

Hoyles, L., Murphy, J., Neve, H., Heller, K. J., Turton, J. F., Mahony, J., Sanderson, J. D., Hudspith, B., Gibson, G. R., McCartney, A. L. and van Sinderen, D. (2015) Klebsiella pneumoniae subsp. pneumoniae–bacteriophage combination from the caecal effluent of a healthy woman. PeerJ, 3. e1061. ISSN 2167-8359 doi: https://doi.org/10.7717/peerj.1061

Johnson, L. P., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Psichas, A., Frost, G. S., Gibson, G. R. and Barraclough, T. G. (2015) Prebiotics modulate the effects of antibiotics on gut microbial diversity and functioning in vitro. Nutrients, 7 (6). pp. 4480-4497. ISSN 2072-6643 doi: https://doi.org/10.3390/nu7064480

Le Roy, C. I., Mappley, L. J., La Ragione, R. M., Woodward, M. J. and Claus, S. P. (2015) Brachyspira pilosicoli-induced avian intestinal spirochaetosis. Microbial Ecology in Health and Disease, 26. 28853. ISSN 1651-2235 doi: https://doi.org/10.3402/mehd.v26.28853

Le Roy, C. I., Stspetova, J., Sepp, E., Songisepp, E., Claus, S. P. and Mikelsaar, M. (2015) New insights into the impact of Lactobacillus population on host-bacteria metabolic interplay. Oncotarget, 31 (6). pp. 30545-30556. ISSN 1949-2553 doi: https://doi.org/10.18632/oncotarget.5906

Lockyer, S., Corona, G., Yaqoob, P., Spencer, J. P. E. and Rowland, I. (2015) Secoiridoids delivered as olive leaf extract induce acute improvements in human vascular function and reduction of an inflammatory cytokine: a randomised, double-blind, placebo-controlled, cross-over trial. British Journal of Nutrition, 114 (01). pp. 75-83. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114515001269

Mills, C. E., Touzonis, X., Oruna-Concha, M.-J. ORCID: https://orcid.org/0000-0001-7916-1592, Mottram, D. S., Gibson, G. R. and Spencer, J. P. E. (2015) In vitro colonic metabolism of coffee and chlorogenic acid results in selective changes in human faecal microbiota growth. British Journal of Nutrition, 113 (8). pp. 1220-1227. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114514003948

Nyangale, E., Farmer, S., Cash, H., Keller, D., Chernoff, D. and Gibson, G. (2015) Bacillus coagulans GBI-30, 6086 modulates Faecalibacterium prausnitzii in older men and women. Journal of Nutrition, 145 (7). pp. 1446-1452. ISSN 0022-3166 doi: https://doi.org/10.3945/jn.114.199802

Pereira, D. I. A., Aslam, M. F., Frazer, D. M., Schmidt, A., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, McCartney, A. L., Gibson, G. R., Anderson, G. J. and Powell, J. J. (2015) Dietary iron depletion at weaning imprints low microbiome diversity and this is not recovered with oral nano Fe(III). MicrobiologyOpen, 4 (1). pp. 12-27. ISSN 2045-8827 doi: https://doi.org/10.1002/mbo3.213

Ramnani, P., Costabile, A., Bustillo, A. G. R. and Gibson, G. R. (2015) A randomised, double- blind, cross-over study investigating the prebiotic effect of agave fructans in healthy human subjects. Journal of Nutritional Science, 4. e10. ISSN 2048-6790 doi: https://doi.org/10.1017/jns.2014.68

Rastall, R. A. and Gibson, G. R. (2015) Recent developments in prebiotics to selectively impact beneficial microbes and promote intestinal health. Current Opinion in Biotechnology, 32. pp. 42-46. ISSN 0958-1669 doi: https://doi.org/10.1016/j.copbio.2014.11.002

Ravi, A., Avershina, E., Foley, S. L., Ludvigsen, J., Storrø, O., Øien, T., Johnsen, R., McCartney, A. L., L’Abée-Lund, T. M. and Rudi, K. (2015) The commensal infant gut meta-mobilome as a potential reservoir for persistent multidrug resistance integrons. Scientific Reports, 5. 15317. ISSN 2045-2322 doi: https://doi.org/10.1038/srep15317

Reid, G., Brigidi, P., Burton, J. P., Contractor, N., Duncan, S., Fargier, E., Hill, C., Lebeer, S., Martin, R., McBain, A. J., Mor, G., O'Neill, C., Rodriguez, J. M., Swann, J., Hemert, S. v. and Ansell, J. (2015) Microbes central to human reproduction. American Journal of Reproductive Immunology, 73 (1). pp. 1-11. ISSN 1600-0897 doi: https://doi.org/10.1111/aji.12319

Sannasiddappa, T., Hood, G., Hanson, K., Costabile, A., Gibson, G. and Clarke, S. (2015) Staphylococcus aureus MnhF mediates cholate efflux and facilitates survival under human colonic conditions. Infection and Immunity, 83 (6). pp. 2350-2357. ISSN 0019-9567 doi: https://doi.org/10.1128/IAI.00238-15

Thorasin, T., Hoyles, L. and McCartney, A. L. (2015) Dynamics and diversity of the 'Atopobium cluster' in the human faecal microbiota, and phenotypic characterization of 'Atopobium cluster' isolates. Microbiology, 161 (3). pp. 565-579. ISSN 1465-2080 doi: https://doi.org/10.1099/mic.0.000016

Vimaleswaran, K. S., Le Roy, C. I. and Claus, S. P. (2015) Foodomics for personalized nutrition: how far are we? Current Opinion in Food Science, 4. pp. 129-135. ISSN 2214-7993 doi: https://doi.org/10.1016/j.cofs.2015.07.001

Vulevic, J., Juric, A., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Claus, S., Tzortzis, G., Toward, R. and Gibson, G. (2015) Influence of galacto-oligosaccharide mixture (B-GOS) on gut microbiota, immune parameters and metabonomics in elderly persons. British Journal of Nutrition, 114 (4). pp. 586-595. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114515001889

Williams, C. F., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Jiang, L., Plummer, S., Garaiova, I. and Gibson, G. R. (2015) Comparative analysis of intestinal tract models. Annual Review of Food Science and Technology, 6 (1). pp. 329-350. ISSN 1941-1413 doi: https://doi.org/10.1146/annurev-food-022814-015429

Woodward, M. J., Mappley, L. P., Le Roy, C. I., Claus, S. P., Davies, P., Thompson, G. and La Ragione, R. M. (2015) Drinking water application of Denagard® Tiamulin for control of Brachyspira pilosicoli infection of laying poultry. Research in Veterinary Science, 103. pp. 87-95. ISSN 0034-5288 doi: https://doi.org/10.1016/j.rvsc.2015.09.015

Woodward, M. J., Mappley, L., Le Roy, C., Claus, S. P., Davies, P., Thompson, G. and La Ragione, R. M. (2015) Drinking water application of Denargard Tiamulin for control of Brachyspira pilosicoli infection of laying poultry. Research in Veterinary Science, 103. pp. 87-95. ISSN 0034-5288 doi: https://doi.org/10.1016/j.rvsc.2015.09.015

2014

Anjum, M.F., Jones, E., Morrison, V., Tozzoli, R., Morabito, S., Toth, I., Nagy, B., Smith, G., Aspan, A., Nielsen, E. M., Fach, P., Echeita, A., Woodward, M. and La Ragione, R. M. (2014) Use of virulence determinants and seropathotypes to distinguish high- and low-risk Escherichia coli O157 and non-O157 isolates from Europe. Epidemiology and Infection, 142 (5). pp. 1019-1028. ISSN 1469-4409 doi: https://doi.org/10.1017/S0950268813001635

Bodinham, C. L., Smith, L., Thomas, E. L., Bell, J. D., Swann, J. R., Costabile, A., Russell-Jones, D., Umpleby, A. M. and Robertson, M. D. (2014) Efficacy of increased resistant starch consumption in human type 2 diabetes. Endocrine connections, 3 (2). pp. 75-84. ISSN 2049-3614 doi: https://doi.org/10.1530/EC-14-0036

Bruck, W. M., Gibson, G. R. and Bruck, T. B. (2014) The effect of proteolysis on the induction of cell death by monomeric alpha-lactalbumin. Biochimie, 97. pp. 138-143. ISSN 0300-9084 doi: https://doi.org/10.1016/j.biochi.2013.10.007

Chapman, C. M. C., Gibson, G. R. and Rowland, I. (2014) Effects of single- and multi-strain probiotics on biofilm formation and in vitro adhesion to bladder cells by urinary tract pathogens. Anaerobe, 27. pp. 71-76. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2014.02.001

Chattaway, M. A., Jenkins, C., Ciesielczuk, H., Day, M., DoNascimento, V., Rodríguez, I., van Essen-Zandbergen, A., Schink, A.-K., Wu, G., Threlfall, J., Woodward, M. J., Coldham, N., Kadlec, K., Schwarz, S., Dierikx, C., Guerra, B., Helmuth, R., Mevius, D., Woodford, N. and Wain, J. (2014) Evidence of evolving extraintestinal enteroaggregative Escherichia coli ST38 clone. Emerging Infectious Diseases, 20 (11). pp. 1935-1937. ISSN 1080-6040 doi: https://doi.org/10.3201/eid2011.131845

Childs, C. E., Roytio, H., Alhoniemi, E., Fekete, A. A., Forssten, S. D., Hudjec, N., Lim, Y. N., Steger, C. J., Yaqoob, P., Tuohy, K. M., Rastall, R. A., Ouwehand, A. C. and Gibson, G. R. (2014) Xylo-oligosaccharides alone or in synbiotic combination with Bifidobacterium animalis subsp. lactis induce bifidogenesis and modulate markers of immune function in healthy adults: a double-blind, placebo-controlled, randomised, factorial cross-over study. British Journal of Nutrition, 111 (11). pp. 1945-1956. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114513004261

Claus, S. P. (2014) Development of personalised functional foods needs metabolic profiling. Current Opinion in Clinical Nutrition and Metabolic Care, 17 (6). pp. 567-573. ISSN 1363-1950 doi: https://doi.org/10.1097/MCO.0000000000000107

Claus, S. P. (2014) Mammalian-microbial cometabolism of L-Carnitine in the context of atherosclerosis. Cell Metabolism, 20 (5). pp. 699-700. ISSN 1550-4131 doi: https://doi.org/10.1016/j.cmet.2014.10.014

Daud, N. M., Ismail, N. A., Thomas, E. L., Fitzpatrick, J. A., Bell, J. D., Swann, J. R., Costabile, A., Childs, C. E., Pedersen, C., Goldstone, A. P. and Frost, G. S. (2014) The impact of oligofructose on stimulation of gut hormones, appetite regulation, and adiposity. Obesity, 22 (6). pp. 1430-1438. ISSN 1930-739X doi: https://doi.org/10.1002/oby.20754

Eid, N., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Costabile, A., Kuhnle, G. G. C. ORCID: https://orcid.org/0000-0002-8081-8931 and Spencer, J. P. E. (2014) Polyphenols, glucosinolates, dietary fibre and colon cancer: Understanding the potential of specific types of fruit and vegetables to reduce bowel cancer progression. Nutrition and Aging, 2 (1). pp. 45-67. ISSN 1879-7725 doi: https://doi.org/10.3233/NUA-130029

F`eehily, C., Finnerty, A., Hill, C., Casey, P. G., Gahan, C. G. M., O’Byrne,, C. P. and Karatzas, K. A. G. (2014) Divergent evolution of the activity and regulation of the glutamate decarboxylase systems in Listeria monocytogenes EGD-e and 10403S : roles in virulence and acid tolerance. PLoS ONE, 9 (11). e112649. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0112649

Freire-Martín, I., AbuOun, M., Reichel, R., La Ragione, R. M. and Woodward, M. J. (2014) Sequence analysis of a CTX-M-1 IncI1 plasmid found in Salmonella enterica 4,5,12,i:-, Escherichia coli and Klebsiella pneumoniae on a single UK pig farm. Journal of Antimicrobial Chemotherapy, 69 (8). pp. 2098-2101. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dku098

Frost, G. S., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J. R., Psichas, A., Costabile, A., Johnson, L. P., Sponheimer, M., Gibson, G. R. and Barraclough, T. G. (2014) Impacts of plant-based foods in ancestral hominin diets on the metabolism and function of gut microbiota in vitro. mBio, 5. e00853-14. ISSN 2150-7511 doi: https://doi.org/10.1128/mbio.00853-14

Frost, G., Sleeth, M. L., Sahuri-Arisoylu, M., Lizarbe, B., Cerdan, S., Brody, L., Anastasovska, J., Ghourab, S., Hankir, M., Zhang, S., Carling, D., Swann, J. R., Gibson, G., Viardot, A., Morrison, D., Thomas, E. L. and Bell, J. D. (2014) The short-chain fatty acid acetate reduces appetite via a central homeostatic mechanism. Nature Communications, 5 (3611). ISSN 2041-1723 doi: https://doi.org/10.1038/ncomms4611

Gan, X. T., Ettinger, G., Huang, C. X., Burton, J. P., Haist, J. V., Rajapurohitam, V., Sidaway, J. E., Martin, G., Gloor, G. B., Swann, J. R., Reid, G. and Karmazyn, M. (2014) Probiotic administration attenuates myocardial hypertrophy and heart failure following myocardial infarction in the rat. Circulation : heart failure, 7 (3). pp. 491-499. ISSN 1941-3289 doi: https://doi.org/10.1161/​CIRCHEARTFAILURE.113.000978

Guerra-Ordaz, A. A., González-Ortiz, G., La Ragione, R. M., Woodward, M., Collins, J. W., Pérez, J. F. and Martín-Orúe, S. M. (2014) Lactulose and Lactobacillus plantarum, a potential complementary synbiotic to control postweaning colibacillosis in piglets. Applied and Environmental Microbiology, 80 (16). pp. 4879-4886. ISSN 1098-5336 doi: https://doi.org/10.1128/AEM.00770-14

Hartman, H. B., Fell, D. A., Rossell, S., Jensen, P. R., Woodward, M. J., Thorndahl, L., Jelsbak, L., Olsen, J. E., Raghunathan, A., Daefler, S. and Poolman, M. G. (2014) Identification of potential drug targets in Salmonella Typhimurium using metabolic modelling and experimental validation. Microbiology, 160 (6). pp. 1252-1266. ISSN 1350-0872 doi: https://doi.org/10.1099/mic.0.076091-0

Hayward, M. R., AbuOan, M., La Ragione, R. M., Tworschevska, M., Cooley, W., Everest, D. J., Petrovska, L., Jansen, V. A. A. and Woodward, M. (2014) SPI-23 of S.Derby: role in adherence and invasion of porcine tissues. PLoS ONE, 9 (9). e107857. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0107857

Hill, C., Guarner, F., Reid, G., Gibson, G. R., Merenstein, D. J., Pot, B., Morelli, L., Canani, R. B., Flint, H., Salminen, S., Calder, P. C. and Sanders, M. E. (2014) Expert consensus document: the International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic. Nature Reviews in Gastroenterology and Hepatology, 11 (8). pp. 506-514. ISSN 1759-5045 doi: https://doi.org/10.1038/nrgastro.2014.66

Hoyles, L., McCartney, A. L., Neve, H., Gibson, G. R., Sanderson, J. D., Heller, K. J. and van Sinderen, D. (2014) Characterization of virus-like particles associated with the human faecal and caecal microbiota. Research in Microbiology, 165 (10). pp. 803-812. ISSN 0923-2508 doi: https://doi.org/10.1016/j.resmic.2014.10.006

Khalil, N., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G. R., Tuohy, K. M. and Andrews, S. C. ORCID: https://orcid.org/0000-0003-4295-2686 (2014) In vitro batch cultures of gut microbiota from healthy and ulcerative colitis (UC) subjects suggest that sulphate-reducing bacteria levels are raised in UC and by a protein-rich diet. International Journal of Food Science and Nutrition, 65 (1). pp. 79-88. ISSN 1465-3478 doi: https://doi.org/10.3109/09637486.2013.825700

Klootwijk, E. D., Reichold, M., Helip-Wooley, A., Tolaymat, A., Broeker, C., Robinette, S. L., Reinders, J., Peindl, D., Renner, K., Eberhart, K., Assmann, N., Oefner, P. J., Dettmer, K., Sterner, C., Schroeder, J., Zorger, N., Witzgall, R., Reinhold, S. W., Stanescu, H. C., Bockenhauer, D., Jaureguiberry, G., Courtneidge, H., Hall, A. M., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Holmes, E., Nicholson, J. K., O'Brien, K., Bernardini, I., Krasnewich, D., Arcos-Burgos, M., Izumi, Y., Nonoguchi, H., Jia, Y., Reddy, J. K., Ilyas, M., Unwin, R. J., Gahl, W. A., Warth, R. and Kleta, R. (2014) Mistargeting of peroxisomal EHHADH and inherited renal Fanconi's syndrome. The New England Journal of Medicine, 370 (2). pp. 129-138. ISSN 1533-4406 doi: https://doi.org/10.1056/NEJMoa1307581

Kok, M. G.M., Swann, J. R., Wilson, I. D., Somsen, G. W. and de Jong, G. J. (2014) Hydrophilic interaction chromatography–mass spectrometry for anionic metabolic profiling of urine from antibiotic-treated rats. Journal of Pharmaceutical and Biomedical Analysis, 92. pp. 98-104. ISSN 0731-7085 doi: https://doi.org/10.1016/j.jpba.2014.01.008

Ladep, N. G., Dona, A. C., Lewis, M. R., Crossey, M. M. E., Lemoine, M., Okeke, E., Shimakawa, Y., Duguru, M., Njai, H. F., Fye, H. K. S., Taal, M., Chetwood, J., Kasstan, B., Khan, S. A., Garside, D. A., Wijeyesekera, A. ORCID: https://orcid.org/0000-0001-6151-5065, Thillainayagam, A. V., Banwat, E., Thursz, M. R., Nicholson, J. K., Njie, R., Holmes, E. and Taylor-Robinson, S. D. (2014) Discovery and validation of urinary metabotypes for the diagnosis of hepatocellular carcinoma in West Africans. Hepatology, 60 (4). pp. 1291-1301. ISSN 1527-3350 doi: https://doi.org/10.1002/hep.27264

Lamichhane, S., Yde, C. C., Forssten, S., Ouwehand, A. C., Saarinen, M., Jensen, H. M., Gibson, G. R., Rastall, R. A., Fava, F. and Bertram, H. C. (2014) Impact of dietary polydextrose fiber on the human gut metabolome. Journal of Agricultural and Food Chemistry, 62 (40). pp. 9944-9951. ISSN 0021-8561 doi: https://doi.org/10.1021/jf5031218

Lees, H., Swann, J., Poucher, S. M., Nicholson, J. K., Holmes, E., Wilson, I. D. and Marchesi, J. R. (2014) Age and microenvironment outweigh genetic influence on the Zucker rat microbiome. PLoS ONE, 9 (9). e100916. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0100916

Likotrafiti, E., Tuohy, K. M., Rastall, B. and Gibson, G. (2014) An in vitro study of the effect of probiotics, prebiotics and synbiotics on the elderly faecal microbiota. Anaerobe, 27. pp. 50-55. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2014.03.009

Mappley, L. J., La Ragione, R. M. and Woodward, M. J. (2014) Brachyspira and its role in avian intestinal spirochaetosis. Veterinary Microbiology, 168 (3-4). pp. 245-260. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2013.11.019

McArdle, S. E. B., Pockley, A. G., Gibson, G. R. and Rees, R. C. (2014) Prostate cancer: important steps and considerations in the design of therapeutic vaccines. Oncoimmunology, 3 (3). e28049. ISSN 2162-402X doi: https://doi.org/10.4161/onci.28049

McNeece, G., Naughton, V., Woodward, M. J., Dooley, J. S. G. and Naughton, P. J. (2014) Array based detection of antibiotic resistance genes in Gram negative bacteria isolated from retail poultry meat in the UK and Ireland. International Journal of Food Microbiology, 179. pp. 24-32. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2014.03.019

Nyangale, E. P., Farmer, S., Keller, D., Chernoff, D. and Gibson, G. R. (2014) Effect of prebiotics on the fecal microbiota of elderly volunteers after dietary supplementation of Bacillus coagulans GBI-30, 6086. Anaerobe, 30. pp. 75-81. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2014.09.002

Sanders, M. E., Lenoir-Wijnkoop, I., Salminen, S., Merenstein, D., Gibson, G., Petschow, B. W., Tancredi, D. J., Jacques, P. and Pot, B. (2014) Probiotics and prebiotics: prospects for public health and nutritional recommendations. Annals of the New York Academy of Sciences, 1309. pp. 19-29. ISSN 1749-6632 doi: https://doi.org/10.1111/nyas.12377

Sarbini, S. R., Deaville, E. R., Gibson, G. R. and Rastall, R. A. (2014) Potential of novel dextran oligosaccharides as prebiotics for obesity management through in vitro experimentation. British Journal of Nutrition, 112 (8). pp. 1303-1314. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114514002177

Stephens, K., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. (2014) Gastrointestinal microbiota. In: Lomer, M. (ed.) Advanced nutrition and dietetics in gastroenterology. Wiley-Blackwell, Chichester, pp. 41-47. ISBN 9780470671320 doi: https://doi.org/10.1002/9781118872796.ch1.8

Swann, J. R. and Claus, S. P. (2014) Nutrimetabonomics: nutritional applications of metabolic profiling. Science Progress, 97 (1). pp. 41-47. ISSN 0036-8504 doi: https://doi.org/10.3184/003685014X13898807933527

Swann, J. R., Reid, G., Nduti, N., Sybesma, W., Kort, R., Kollmann, T. R., Adam, R., Boga, H., Brown, E. M., Einerhand, A., El-Nezami, H., Gloor, G. B., Kavere, I. I., Lindahl, J., Manges, A., Mamo, W., Martin, R., McMillan, A., Obiero, J., Ochieng, P. A., Onyango, A., Rulisa, S., Salminen, E., Salminen, S., Sije, A., van Treuren, W., Waweru, D. and Kemp, S. J. (2014) Harnessing microbiome and probiotic research in sub-Saharan Africa: recommendations from an African workshop. Microbiome, 2 (12). pp. 1-13. ISSN 2049-2618 doi: https://doi.org/10.1186/2049-2618-2-12

Tang, Y., Gielbert, A., Underwood, A., Woodward, M. J. and Petrovska, L. (2014) Metaproteomics analysis reveals the adaptation process for the chicken gut microbiota. Applied and Environmental Microbiology, 80 (2). pp. 478-485. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.02472-13

2013

Bienestock, J., Gibson, G., Klaenhammer , T. R., Walker , W. A. and Neish , A. (2013) New insights into probiotic mechanisms: a harvest from functional and metagenomic studies. Gut Microbes, 4 (2). pp. 94-100. ISSN 1949-0984 doi: https://doi.org/10.4161/gmic.23283

Boulange, C. L., Claus, S. P., Chou, C. J., Collino, S., Montoliu, I., Kochhar, S., Holmes, E., Rezzi, S., Nicholson, J. K., Dumas, M. E. and Martin, F.-P. J. (2013) Early metabolic adaptation in C57BL/6 mice resistant to high fat diet induced weight gain involves an activation of mitochondrial oxidative pathways. Journal of Proteome Research, 12 (4). pp. 1956-1968. ISSN 1535-3907 doi: https://doi.org/10.1021/pr400051s

Chapman, C.M.C., Gibson, G.R., Todd, S. ORCID: https://orcid.org/0000-0002-9981-923X and Rowland, I. (2013) Comparative in vitro inhibition of urinary tract pathogens by single- and multi-strain probiotics. European Journal of Nutrition, 52 (6). pp. 1669-1677. ISSN 1436-6215 doi: https://doi.org/10.1007/s00394-013-0501-2

Claus, S. P. (2013) Fighting undernutrition: don't forget the bugs. Cell Host and Microbe, 13 (3). pp. 239-240. ISSN 1931-3128 doi: https://doi.org/10.1016/j.chom.2013.02.015

Claus, S. P. and Swann, J. R. (2013) Nutrimetabonomics: applications for nutritional sciences, with specific reference to gut microbial interactions. Annual Review of Food Science and Technology, 4. pp. 381-399. ISSN 1941-1413 doi: https://doi.org/10.1146/annurev-food-030212-182612

Connolly, J., Valdramidis, V. P., Byrne, E., Karatzas, K.-A., Cullen, P. J., Keener, K. M. and Mosnier, J. P. (2013) Characterization and antimicrobial efficacy against E. coli of a helium/air plasma at atmospheric pressure created in a plastic package. Journal of Physics D: Applied Physics, 46 (3). 035401. ISSN 1361-6463 doi: https://doi.org/10.1088/0022-3727/46/3/035401

Cueva , C., Sánchez-Patán, F., Monagas , M., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G. R., Martín-Álvarez , P. J., Bartolomé, B. and Moreno-Arribas , M. V. (2013) In vitro fermentation of grape seed flavan-3-ol fractions by human faecal microbiota: changes in microbial groups and phenolic metabolites. FEMS Microbiology Ecology, 83 (3). pp. 792-805. ISSN 1574-6941 doi: https://doi.org/10.1111/1574-6941.12037

De Castro, N. M., Yaqoob, P., De la Fuente, M., Baeza, I. and Claus, S. P. (2013) Premature impairment of methylation pathway and cardiac metabolic dysfunction in fa/fa obese Zucker rats. Journal of Proteome Research, 12 (4). pp. 1935-1945. ISSN 1535-3907 doi: https://doi.org/10.1021/pr400025y

Dewulf, E. M., Cani, P. D., Claus, S. P., Fuentes, S., Puylaert, P. G. B., Neyrinck, A. M., Bindels, L. B., de Vos, W. M., Gibson, G. R., Thissen, J.-P. and Delzenne, N. M. (2013) Insight into the prebiotic concept: lessons from an exploratory, double blind intervention study with inulin-type fructans in obese women. Gut, 32 (8). pp. 1112-1121. ISSN 1468-3288 doi: https://doi.org/10.1136/gutjnl-2012-303304

El Aidy, S., Derrien, M., Merrifield, C. A., Levenez, F., Dore, J., Boekschoten, M. V., Dekker, J., Holmes, E., Zoetendal, E. G., van Baarlen, P., Claus, S. P. and Kleerbezem, M. (2013) Gut bacteria-host metabolic interplay during conventionalisation of the mouse germfree colon. ISME Journal, 7. pp. 743-755. ISSN 1751-7370 doi: https://doi.org/10.1038/ismej.2012.142

El Aidy, S., Merrifield, C. A., Derrien, M., van Baarlen, P., Hooiveld, G., Levenez, F., Doré, J., Dekker, J., Holmes, E., Claus, S. P., Reijngoud, D. J. and Kleerebezem, M. (2013) The gut microbiota elicits a profound metabolic reorientation in the mouse jejunal mucosa during conventionalisation. Gut, 62 (9). pp. 1306-1314. ISSN 1468-3288 doi: https://doi.org/10.1136/gutjnl-2011-301955

Feehily, C., O'Byrne, C.P. and Karatzas, K. A. G. (2013) Functional γ-aminobutyrate shunt in Listeria monocytogenes: role in acid tolerance and succinate biosynthesis. Applied and Environmental Microbiology, 79 (1). pp. 74-80. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.02184-12

Guerra-Ordaz, A. A., Molist, F., Hermes, R. G., Gómez de Segura, A., La Ragione, R. M., Woodward, M. J., Tchorzewska, M. A., Collins, J. W., Pérez, J. F. and Martin-Orúe, S. M. (2013) Effect of inclusion of lactulose and Lactobacillus plantarum on the intestinal environment and performance of piglets at weaning. Animal Feed Science and Technology, 185 (3-4). pp. 160-168. ISSN 0377-8401 doi: https://doi.org/10.1016/j.anifeedsci.2013.07.009

Hayward, M. R., Jansen, V. A. A. and Woodward, M. J. (2013) Comparative genomics of Salmonella enterica serovars Derby and Mbandaka, two prevalent serovars associated with different livestock species in the UK. BMC Genomics, 14 (1). p. 365. ISSN 1471-2164 doi: https://doi.org/10.1186/1471-2164-14-365

Hobden, M. R., Martin-Morales, A., Guerin-Deremaux, L., Wils, D., Costabile, A., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Rowland, I., Kennedy, O. B. ORCID: https://orcid.org/0000-0003-3885-4872 and Gibson, G. R. (2013) In Vitro Fermentation of NUTRIOSE® FB06, a wheat dextrin soluble fibre, in a continuous culture human colonic model system. PLoS ONE, 8 (10). e77128. doi: https://doi.org/10.1371/journal.pone.0077128

Hoyles, L., Clear, J. A. and McCartney, A. L. (2013) Use of denaturing gradient gel electrophoresis to detect Actinobacteria associated with the human faecal microbiota. Anaerobe, 22. pp. 90-96. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2013.06.001

Hoyles, L., Ortman, K., Cardew, S., Foster, G., Rogerson, F. and Falsen, E. (2013) Corynebacterium uterequi sp. nov., a non-lipophilic bacterium isolated from urogenital samples from horses. Veterinary Microbiology, 165 (3-4). pp. 469-474. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2013.03.025

Inness, V.L., Khoo, C., Gross, K.L., Hoyles, L., Gibson, G. R. and McCartney, A. L. (2013) An assessment of the prebiotic potential of single and blended substrates in anaerobic in vitro batch culture fermentations using canine faecal samples as inocula. International Journal of Probiotics and Prebiotics, 8 (4). p. 133. ISSN 1555-1431

Jarvis, B. (2013) 15. Statistical approaches to the analysis of microbiological data. In: Granato, D. and Ares, G. (eds.) Mathematical and Statistical Methods in Food Science and Technology. John Wiley & Sons, Inc., Hoboken, USA, pp. 249-284, Chapter 15. ISBN 9781118433683 doi: https://doi.org/10.1002/9781118434635.ch15

Kok, M. G. M., Ruijken, M. A., Swann, J. R., Wilson, I. D., Somsen, G. W. and de Jong, G. J. (2013) Anionic metabolic profiling of urine from antibiotic-treated rats by capillary electrophoresis–mass spectrometry. Analytical and Bioanalytical Chemistry, 405 (8). pp. 2585-2594. ISSN 1618-2650 doi: https://doi.org/10.1007/s00216-012-6701-4

La Ragione, R. M., Woodward, M. J., Kumar, M., Rodenberg, J., Fan, H., Wales, A. D. and Karaca, K. (2013) Efficacy of a live attenuated Escherichia coli O78:K80 vaccine in chickens and turkeys. Avian Diseases, 57 (2). pp. 273-279. ISSN 0005-2086 doi: https://doi.org/10.1637/10326-081512-Reg.1

Lees, H. J., Swann, J. R., Wilson, I. D., Nicholson, J. K. and Holmes, E. (2013) Hippurate: the natural history of a mammalian-microbial co-metabolite. Journal of Proteome Research, 12 (4). pp. 1527-1546. ISSN 1535-3907 doi: https://doi.org/10.1021/pr300900b

Lewis, M. (2013) A pig’s microbiota – a result of many factors. Pig Progress, 29 (8). pp. 24-26.

Lewis, M. C., Patel, D. V., Fowler, J., Duncker, S., Zuercher, A. W., Mercenier, A. and Bailey, M. (2013) Dietary supplementation with Bifidobacterium lactis NCC2818 from weaning reduces local immunoglobulin production in lymphoid-associated tissues but increases systemic antibodies in healthy neonates. British Journal of Nutrition, 110 (7). pp. 1243-1252. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114513000251

Likotraftiti, E., Tuohy, K. M., Gibson, G. R. and Rastall, R. A. (2013) Development of antimicrobial synbiotics using potentially-probiotic faecal isolates of Lactobacillus fermentum and Bifidobacterium longum. Anaerobe, 20. pp. 5-13. ISSN 1075-9964

Lopez-Andres , P., Luciano, G., Vasta, V., Gibson, T. M., Biondi, L., Priolo, A. and Mueller-Harvey, I. (2013) Dietary quebracho tannins are not absorbed, but increase the antioxidant capacity of liver and plasma in sheep. British Journal of Nutrition, 110 (4). pp. 632-639. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114512005703

Mann, E. R., You, J., Horneffer-van der Sluis, V., Bernardo, D., Omar Al-Hassi, H., Landy, J., Peake, S. T., Thomas, L. V., Tee, C. T., Lee, G. H., Hart, A. L., Yaqoob, P. and Knight, S. C. (2013) Dysregulated circulating dendritic cell function in ulcerative colitis is partially restored by probiotic strain Lactobacillus casei Shirota. Mediators of inflammation, 2013. 573576. ISSN 0962-9351 doi: https://doi.org/10.1155/2013/573576

Mappley, L. J., Tchórzewska, M. A., Nunez, A., Woodward, M. and La Ragione, R. M. (2013) Evidence for systemic spread of the potentially zoonotic intestinal spirochaete Brachyspira pilosicoli in experimentally challenged laying chickens. Journal of Medical Microbiology, 62 (2). pp. 297-302. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.052126-0

Mappley, L. J., Tchórzewska, M. A., Nunez, A., Woodward, M. J., Bramley, P. M. and La Ragione, R. M. (2013) Oral treatment of chickens with Lactobacillus reuteri LM1 reduces Brachyspira pilosicoli-induced pathology. Journal of Medical Microbiology, 62 (2). pp. 287-296. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.051862-0

Merrifield, C. A., Lewis, M. C., Claus, S. P., Pearce, J. T. M., Cloarec, O., Duncker, S., Heinzmann, S. S., Dumas, M.-E., Kochar, S., Rezzi, S., Mercenier, A., Nicholson, J. K., Bailey, M. and Holmes, E. (2013) Weaning diet induces sustained metabolic phenotype shift in the pig and influences host response to Bifidobacterium lactis NCC2818. Gut, 62 (6). pp. 842-851. ISSN 1468-3288 doi: https://doi.org/10.1136/gutjnl-2011-301656

Merrifield, C. A., Lewis, M. C., Claus, S., Pearce, J. T. M., Cloarec, O., Duncker, S., Heinzmann, S. S., Dumas, M., Kochhar, S., Rezzi, S., Mercenier, A., Nicholson, J. K., Bailey, M. and Holmes, E. (2013) Weaning diet induces sustained metabolic phenotype shift in the pig and influences host response to Bifidobacterium lactis NCC2818. Gut, 62 (6). pp. 842-851. ISSN 1468-3288 doi: https://doi.org/10.1136/gutjnl-2011-301656

Mills, C., Oruna-Concha, M. J. ORCID: https://orcid.org/0000-0001-7916-1592, Mottram, D. S., Gibson, G. R. and Spencer, J. P. E. (2013) The effect of processing on chlorogenic acid content of commercially available coffee. Food Chemistry, 141 (4). pp. 3335-3340. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2013.06.014

Petschow, B., Dore, J., Hibberd, P., Dinan, T., Reid, G., Blaser, M., Cani, P. D., Degnan, F. H., Foster, J., Gibson, G., Hutton, J., Klaenhammer, T. R., Ley, R., Nieuwdorp, M., Pot, B., Relman, D., Serazin, A. and Sanders, M. E. (2013) Probiotics, prebiotics, and the host microbiome: the science of translation. Annals of the New York Academy of Sciences, 1306. pp. 1-17. ISSN 1749-6632 doi: https://doi.org/10.1111/nyas.12303

Richards, S. E., Wang, Y., Claus, S. P., Lawler, D., Kochhar, S., Holmes, E. and Nicholson, J. K. (2013) Metabolic phenotype modulation by caloric restriction in a lifelong dog study. Journal of Proteome Research, 12 (7). pp. 3117-3127. ISSN 1535-3907 doi: https://doi.org/10.1021/pr301097k

Sarbini, S. R., Kolida, S., Gibson, G. R. and Rastall, R. A. (2013) In vitro fermentation of commercial α-gluco-oligosaccharide by faecal microbiota from lean and obese human subjects. British Journal of Nutrition, 109 (11). pp. 1980-1989. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114512004205

Swann, J. R., Spagou, K., Lewis, M., Nicholson, J. K., Glei, D. A., Seeman, T. E., Coe, C. L., Goldman, N., Ryff, C. D., Weinstein, M. and Holmes, E. (2013) Microbial−mammalian cometabolites dominate the age-associated urinary metabolic phenotype in Taiwanese and American populations. Journal of Proteome Research, 12 (7). pp. 3166-3180. ISSN 1535-3907 doi: https://doi.org/10.1021/pr4000152

Tejero-Sarinena, S., Barlow, J., Costabile, A., Gibson, G. R. and Rowland, I. (2013) Antipathogenic activity of probiotics against Salmonella Typhimurium and Clostridium difficile in anaerobic batch culture systems: is it due to synergies in probiotic mixtures or the specificity of single strains? Anaerobe, 24. pp. 60-65. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2013.09.011

Vulevic, J., Juric, A., Tzortzis, G. and Gibson, G. R. (2013) A mixture of trans-galactooligosaccharides reduces markers of metabolic syndrome and modulates the fecal microbiota and immune function of overweight adults. Journal of Nutrition, 143 (3). pp. 324-331. ISSN 1541-6100 doi: https://doi.org/10.3945/jn.112.166132

Wu, G., Day, M. J., Mafura, M. T., Nunez-Garcia, J., Fenner, J. J., Sharma, M., van Essen-Zandbergen, A., Rodríguez, I., Dierikx, C., Kadlec, K., Schink, A.-K., Wain, J., Helmuth, R., Guerra, B., Schwarz, S., Threlfall, J., Woodward, M. J.,, Woodford, N., Coldham, N. and Mevius, D. (2013) Comparative Analysis of ESBL-Positive Escherichia coli isolates from Animals and Humans from the UK, the Netherlands and Germany. PLoS ONE, 8 (9). ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0075392

argiri, a., Zoumpopoulou, g., Karatzas, K.-A., Tsakalidou, e., Nychas, G.-J., Panagou, E. and Tassou, C. (2013) Selection of potential probiotic lactic acid bacteria from fermented olives by in vitro tests. Food Microbiology, 33 (2). pp. 282-291. ISSN 0740-0020

2012

Anastasovska, J., Arora, T., Sanchez Canon, G. J., Parkinson, J. R. C., Tuohy, K., Gibson, G. R., Nadkarni, N. A., So, P. W., Thomas , E. L., Hankir, M. K., Van Loo, J., Modi, N., Bell, J. D. and Frost, G. (2012) Fermentable carbohydrate alters hypothalamic neuronal activity and protects against the obesogenic environment. Obesity, 20. pp. 1016-1023. ISSN 1930-739X doi: https://doi.org/10.1038/oby.2012.6

Arora, T., Loo, R. L., Anastasovska, J., Gibson, G. R., Tuohy, K. M., Sharma, R. K., Swann, J. R., Deaville, E. R., Sleeth, M. J., Thomas, E. L., Holmes, E., Bell, J. D. and Frost, G. (2012) Differential effects of two fermentable carbohydrates on central appetite regulation and body composition. PLoS ONE, 7. e43263. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0043263

Bailey, M., Christoforidou, Z. and Lewis, M. (2012) Evolution of immune systems: specificity and autoreactivity. Autoimmunity Reviews, 12 (6). pp. 643-647. ISSN 1568-9972 doi: https://doi.org/10.1016/j.autrev.2012.10.007

Bailey, M., Christoforidou, Z. and Lewis, M. C. (2012) The evolutionary basis for differences between the immune systems of man, mouse, pig and ruminants. Veterinary Immunology and Immunopathology, 152 (1-2). pp. 13-19. ISSN 0165-2427 doi: https://doi.org/10.1016/j.vetimm.2012.09.022

Brownawell, A. M., Caers , W., Gibson, G., Kendall , C. W.C., Lewis, K. D., Ringel, Y. and Slavin, J. L. (2012) Prebiotics and the health benefits of fiber: current regulatory status, future research, and goals. Journal of Nutrition, 142 (5). pp. 962-974. ISSN 1541-6100 doi: https://doi.org/10.3945/jn.112.158147

Costabile, A., Fava, F., Roytio, H., Forssten, S. D., Olli, K., Klievink, J., Rowland, I. R., Ouwehand, A. C., Rastall, R. A., Gibson, G. R. and Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 (2012) Impact of polydextrose on the faecal microbiota: a double-blind, crossover, placebo-controlled feeding study in healthy human subjects. British Journal of Nutrition, 108 (3). pp. 471-481. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114511005782

Cox, R., Su, T., Clough, H., Woodward, M. J. and Sherlock, C. (2012) Spatial and temporal patterns in antimicrobial resistance of Salmonella Typhimurium in cattle in England and Wales. Epidemiology and Infection, 140 (11). pp. 2062-2073. ISSN 1469-4409 doi: https://doi.org/10.1017/S0950268811002755

Cunningham, K., Claus, S. P., Lindon, J. C., Holmes, E., Everett, J. R., Nicholson, J. K. and Coen, M. (2012) Pharmacometabonomic characterization of xenobiotic and endogenous metabolic phenotypes that account for inter-individual variation in isoniazid-induced toxicological response. Journal of Proteome Research, 11 (9). pp. 4630-4642. ISSN 1535-3907 doi: https://doi.org/10.1021/pr300430u

Cysneiros, D., Banks, C. J., Heaven, S. and Karatzas, K.-A. (2012) The effect of pH control and ‘hydraulic flush’ on hydrolysis and Volatile Fatty Acids (VFA) production and profile in anaerobic leach bed reactors digesting a high solids content substrate. Bioresource Technology. ISSN 0960-8524

Cysneiros, D., Banks, C. J., Heaven, S. and Karatzas, K.-A. G. (2012) The role of phase separation and feed cycle length in leach beds coupled to methanogenic reactors for digestion of a solid substrate (Part 1): Optimisation of reactors’ performance. Bioresource Technology, 103 (1). pp. 56-63. ISSN 0960-8524 doi: https://doi.org/10.1016/j.biortech.2011.09.094

Dadkhah, H., Bassami, M. R., Hashemi, S., Shahraz, F., Hosseini, H., Karatzas, K. A. G. and Khaksar, R. (2012) Evaluation and comparison of SYBR Green I Real-Time PCR and TaqMan Real-Time PCR methods for quantitative assay of Listeria monocytogenes in nutrient broth and milk. African Journal of Microbiology Research, 6 (9). pp. 1908-1917. ISSN 1996-0808 doi: https://doi.org/10.5897/AJMR11.889

Donovan, S. M., Schneeman, B., Gibson, G. R. and Sanders, M. E. (2012) Establishing and evaluating health claims for probiotics. Advances in Nutrition, 3 (5). pp. 723-725. ISSN 2156-5376 doi: https://doi.org/10.3945/an.112.002592

Feehily, C. and Karatzas, K. A. G. (2012) Role of glutamate metabolism in bacterial responses towards acid and other stresses. Journal of Applied Microbiology, 114 (1). pp. 11-24. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2012.05434

Foster, G., Wragg, P., Koylass, M. S., Whatmore, A. M. and Hoyles, L. (2012) Isolation of Actinomyces hyovaginalis from sheep and comparison with isolates obtained from pigs. Veterinary Microbiology, 157 (3-4). pp. 471-475. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2012.01.003

Hidalgo, M. , Oruna-Concha, M. J. ORCID: https://orcid.org/0000-0001-7916-1592, Kolida, S., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Kallithraka, S., Spencer, J. P. E., Gibson, G. R. and de Pascual-Teresa, S. (2012) Metabolism of anthocyanins by human gut microflora and their influence on gut bacterial growth. Journal of Agricultural and Food Chemistry, 60 (15). pp. 3882-3890. ISSN 0021-8561 doi: https://doi.org/10.1021/jf3002153

Holloway, A. C., Mueller-Harvey, I., Gould, S. W. J., Fielder, M. D., Naughton, D. P. and Kelly, A. F. (2012) The effect of copper(II), iron(II) sulphate and vitamin C combinations on the weak antimicrobial activity of (+)-catechin against Staphylococcus aureus and other microbes. Metallomics, 4. pp. 1280-1286. ISSN 1756-5901 doi: https://doi.org/10.1039/C2MT20143G

Holmes, E., Kinross, J., Gibson, G., Burcelin, R., Jia, W., Pettersen, S. and Nicholson, J. K. (2012) Therapeutic modulation of microbiota-host metabolic interactions. Science Translational Medicine, 4 (137). 137rv6. ISSN 1946-6234 doi: https://doi.org/10.1126/scitranslmed.3004244

Howarth, G. S., Butler, R. N., Salminen, S., Gibson, G. R. and Donovan, S. M. (2012) Probiotics for optimal nutrition: from efficacy to guidelines. Advances in Nutrition, 3. pp. 720-722. ISSN 2156-5376 doi: https://doi.org/10.3945/an.112.002501

Hoyles, L. and McCartney, A. (2012) Genus IV. Mobiluncus. In: Whitman, W. B., Goodfellow, M., Kaempfer, P., Busse, H.-J., Trujillo, M.E., Ludwig, W., Suzuki, K. -i. and Parte, A. (eds.) Bergey’s Manual of Systematic Bacteriology: 2nd edition. The Actinobacteria, part A. Bergey's Manual of Systematic Bacteriology, 5. Springer, pp. 126-139. ISBN 9780387950433

Hoyles, L., Honda, H., Logan, N. A., Halket, G., La Ragione, R. M. and McCartney, A. L. (2012) Recognition of greater diversity of Bacillus species and related bacteria in human faeces. Research in Microbiology, 163 (1). pp. 3-13. ISSN 0923-2508 doi: https://doi.org/10.1016/j.resmic.2011.10.004

Jiménez-Pranteda, M. L., Aguilera, M., McCartney, A. L., Hoyles, L., Jiménez-Valera, M., Náder-Marcías, M. E., Ramos-Cormenzana, A. and Monteoliva-Sánchez, M. (2012) Investigation of the impact of feeding Lactobacillus plantarum CRL 1815 encapsulated in microbially derived polymers on the rat faecal microbiota. Journal of Applied Microbiology, 113 (2). pp. 399-410. ISSN 1365-2672 doi: https://doi.org/10.1111/j.1365-2672.2012.05343.x

Karatzas, K.-A. G., Suur, L. and O'Byrne, C. P. (2012) Characterisation of the intracellular-glutamate decarboxylase system (GAD): analysis of its function, transcription and role in the acid resistance of various strains of Listeria monocytogenes. Applied and Environmental Microbiology, 78 (10). pp. 3571-3579. ISSN 1098-5336 doi: https://doi.org/10.1128/​AEM.00227-12

La Ragione, R. M., Best, A., Aktan, I., Clifton-Hadley, F. A., Dugdale, A. H., Weyer, U., Crawley, T., Townsend, P., Cooley, W. A., Johnson, L., Wangoo, A., Woodward, M. J. and Wales, A. D. (2012) Escherichia coli O115 forms fewer attaching and effacing lesions in the ovine colon in the presence of E. coli O157:H7. Research in Veterinary Science, 93 (1). pp. 42-45. ISSN 0034-5288 doi: https://doi.org/10.1016/j.rvsc.2011.07.026

Laycock, G., Sait, L., Inman, C., Lewis, M., Smidt, H., van Diemen, P., Jorgensen, F., Stevens, M. and Bailey, M. (2012) A defined intestinal colonization microbiota for gnotobiotic pigs. Veterinary Immunology and Immunopathology, 149 (3-4). pp. 216-224. ISSN 0165-2427 doi: https://doi.org/10.1016/j.vetimm.2012.07.004

Lewis, M. C., Inman, C. F., Patel, D., Schmidt, B., Imke, M., Miller, B., Gill, B. P., Pluske, J., Kelly, D., Stokes, C. R. and Bailey, M. (2012) Direct experimental evidence that early-life farm environment influences regulation of immune responses. Pediatric Allergy and Immunology, 23 (3). pp. 265-269. ISSN 1399-3038 doi: https://doi.org/10.1111/j.1399-3038.2011.01258.x

Maccaferri, S., Klinder, A., Cacciatore, S., Chittarari, R., Honda, H., Luchinat, C., Bertini, I., Carnevali, P., Gibson, G. R., Brigidi, P. and Costabile, A. (2012) In vitro fermentation of potential prebiotic flours from natural sources: impact on the human colonic microbiota and metabolome. Molecular Nutrition & Food Research, 56 (8). pp. 1342-1352. ISSN 1613-4125 doi: https://doi.org/10.1002/mnfr.201200046

Madeo, M., O'Riordan, N., Fuchs, T. M., Utratna, M., Karatzas, K. A. G. and O'Byrne, C. P. (2012) Thiamine plays a critical role in the acid tolerance of Listeria monocytogenes. FEMS Microbiology Letters, 326 (2). pp. 137-143. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.2011.02442.x

Maki, K. C., Gibson, G. R., Dickmann, R. S., Kendall, C. W., Oliver Chen, C.-Y., Costabile, A., Comeli, E. M., McKay, D. L., Almedia, N. G., Jenkins, D., Zello, G. A. and Blumberg, J. B. (2012) Digestive and physiologic effects of a wheat bran extract, arabino-xylan-oligosaccharide, in breakfast cereal. Nutrition, 28 (11-12). pp. 1151-1121. ISSN 0899-9007 doi: https://doi.org/10.1016/j.nut.2012.02.010

Mappley, L. J., Black, M. L., AbuOun, M., Darby, A. C., Woodward, M. J., Parkhill, J., Turner, A. K., Belgard, M. I., La, T., Phillips, N. D., La Ragione, R. M. and Hampson, D. J. (2012) Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity. BMC Genomics, 13. 454. ISSN 1471-2164 doi: https://doi.org/10.1186/1471-2164-13-454

Mestdagh, R., Dumas, M.-E., Rezzi, S., Kochhar, S., Holmes, E., Claus, S. P. and Nicholson, J. K. (2012) Gut microbiota modulate the metabolism of brown adipose tissue in mice. Journal of Proteome Research, 11 (2). pp. 620-630. ISSN 1535-3893 doi: https://doi.org/10.1021/pr200938v

Mueller-Harvey, I., Feucht, W., Polster, J., Trnkova, L., Burgos, P., Parker, A. W. and Botchway, S. W. (2012) Two-photon excitation with pico-second fluorescence lifetime imaging to detect nuclear association of flavanols. Analytica Chimica Acta, 719. pp. 68-75. ISSN 1873-4324 doi: https://doi.org/10.1016/j.aca.2011.12.068

Nicholson, J. K., Holmes, E., Kinross, J., Burcelin, R., Gibson, G., Jia, W. and Petttersen, S. (2012) Host-gut microbiota metabolic interactions. Science, 336 (6086). pp. 1262-1267. ISSN 1095-9203 doi: https://doi.org/10.1126/science.1223813

Niderkorn, V., Mueller-Harvey, I., Le Morvan, A. and Aufrère, J. (2012) Synergistic effects of mixing cocksfoot and sainfoin on in vitro rumen fermentation: role of condensed tannins. Animal Feed Science and Technology, 178 (1-2). pp. 48-56. ISSN 0377-8401 doi: https://doi.org/10.1016/j.anifeedsci.2012.09.014

Nyangale, E. P., Mottram, D. S. and Gibson, G. R. (2012) Gut microbial activity, implications for health and disease: the potential role of metabolite analysis. Journal of Proteome Research, 11 (12). pp. 5573-5585. ISSN 1535-3907 doi: https://doi.org/10.1021/pr300637d

O’Neill , H. V. M., Rademacher, M., Mueller-Harvey, I., Stringano, E., Kightley, S. and Wiseman, J. (2012) Standardised ileal digestibility of crude protein and amino acids of UK-grown peas and faba beans by broilers. Animal Feed Science and Technology, 175 (3-4). pp. 158-167. ISSN 0377-8401 doi: https://doi.org/10.1016/j.anifeedsci.2012.05.004

Rooks, D. J., Libberton, B., Woodward, M. J., Allison, H. E. and McCarthy, A. J. (2012) Development and application of a method for the purification of free shigatoxigenic bacteriophage from environmental samples. Journal of Microbiological Methods, 91 (2). pp. 240-245. ISSN 0167-7012 doi: https://doi.org/10.1016/j.mimet.2012.08.017

Stringano, E., Hayot Carbonero, C., Smith, L. M.J., Brown, R. H. and Mueller-Harvey, I. (2012) Proanthocyanidin diversity in the EU 'HealthyHay' sainfoin (onobrychis viciifolia) germplasm collection. Phytochemistry, 77 . pp. 197-208. ISSN 0031-9422 doi: https://doi.org/10.1016/j.phytochem.2012.01.013

Sánchez-Patán, F., Cueva, C., Monagas, M., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G., Quintanilla-López, J., Lebrón-Aguilar, R., Martín-Álvarez, P., Moreno-Arribas, M. and Bartolomé, B. (2012) In vitro fermentation of a red wine extract by human gut microbiota: changes in microbial groups and formation of phenolic metabolites. Journal of Agricultural and Food Chemistry, 60 (9). pp. 2136-2147. ISSN 0021-8561 doi: https://doi.org/10.1021/jf2040115

Sánchez-Patán, F., Cueva, C., Monagas, M., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Gibson, G. R., Martín-Álvarez, P. J., Moreno-Arribas, M. V. and Bartolomé, B. (2012) Gut microbial catabolism of grape seed flavan-3-ols by human faecal microbiota. Targetted analysis of precursor compounds, intermediate metabolites and end-products. Food Chemistry, 131 (1). pp. 337-347. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2011.08.011

Tejero, S., Rowland, I. R., Rastall, R. and Gibson, G. R. (2012) Prebiotics and probiotics as modulators of the gut microbiota. In: Ross, C. A., Caballero, B., Cousins, R. J., Tucker, K. L. and Ziegler, T. R. (eds.) Modern Nutrition in Health and Disease. Lippincott Williams & Wilkins. ISBN 9781605474618

Toward, R. E., Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. (2012) Immunosenescence and the gut microbiota: the role of probiotics and prebiotics. Nutrition and Aging, 1 (3-4). pp. 167-180. ISSN 1879-7725 doi: https://doi.org/10.3233/NUA-130014

Toward, R., Montandon, S., Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. (2012) Effect of prebiotics on the human gut microbiota of elderly persons. Gut Microbes, 3 (1). pp. 57-60. ISSN 1949-0984 doi: https://doi.org/10.4161/gmic.19411

Walton, G. ORCID: https://orcid.org/0000-0001-5426-5635, Lu, C., Trogh, I., Arnaut, F. and Gibson, G. R. (2012) A randomised, double-blind, placebo controlled cross-over study to determine the gastrointestinal effects of consumption of arabinoxylanoligosaccharides enriched bread in healthy volunteers. Nutrition Journal, 11 (1). 36. ISSN 1475-2891 doi: https://doi.org/10.1186/1475-2891-11-36

Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Swann, J. E. and Gibson, G. (2012) Prebiotics for gut microbiota modulation through diet. In: Rosenberg, E., DeLong, E. F., Lory, S. and Stackebrandt, E. (eds.) The Prokaryotes: A Handbook on the Biology of Bacteria 4th Edition. Springer, pp. 25-43, Volume 5 (Human Microbiology). ISBN 9780387334882

Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, van deb Heauvel, E. G.H.M., Kosters , M. H. W. , Rastall, R. A., Tuohy, K. M. and Gibson, G. R. (2012) A randomised crossover study investigating the effects of galacto-oligosaccharides on the faecal microbiota in men and women over 50 years of age. British Journal of Nutrition, 107 (10). pp. 1466-1475. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114511004697

Wu, G., Erlicht, R., Mafura, M., Stokes, M., Smith, N., Pritchard, G. C. and Woodward, M. J. (2012) Escherichia coli isolates from extraintestinal organs of livestock animals harbour diverse virulence genes and belong to multiple genetic lineages. Veterinary Microbiology, 160 (1-2). pp. 197-206. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2012.05.029

2011

Al-Zeyara, S. A., Jarvis, B. and Mackey, B. M. (2011) The inhibitory effect of natural microflora of food on growth of Listeria monocytogenes in enrichment broths. International Journal of Food Microbiology, 145 (1). pp. 98-105. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2010.11.036

Anjum, M. F., Choudhary, S., Morrison, V., Snow, L. C., Mafura, M., Slickers, P., Ehricht, R. and Woodward, M. J. (2011) Identifying antimicrobial resistance genes of human clinical relevance within Salmonella isolated from food animals in Great Britain. Journal of Antimicrobial Chemotherapy, 66 (3). pp. 550-559. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkq498

Arroyo, C., Cebrián, G., Mackey, B. M., Condón, S. and Pagán, R. (2011) Environmental factors influencing the inactivation of Cronobacter sakazakii by high hydrostatic pressure. International Journal of Food Microbiology, 147 (2). pp. 134-143. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2011.03.018

Brouwer, A., Hill, A. and Woodward, M. J. (2011) What makes a Salmonella strain epidemic? An expert opinion workshop. Veterinary Record, 168 (4). 98. ISSN 2042-7670 doi: https://doi.org/10.1136/vr.c5429

Chapman, C. M., Gibson, G. R. and Rowland, I. (2011) Health benefits of probiotics: are mixtures more effective than single strains? European Journal of Nutrition, 50 (1). pp. 1-17. ISSN 1436-6207 doi: https://doi.org/10.1007/s00394-010-0166-z

Charoenwong, D., Andrews, S. ORCID: https://orcid.org/0000-0003-4295-2686 and Mackey, B. (2011) Role of rpoS in the Development of Cell Envelope Resilience and Pressure Resistance in Stationary-Phase Escherichia coli. Applied and Environmental Microbiology, 77 (15). pp. 5220-5229. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.00648-11

Claus, S. P., Ellero, S. L., Berger, B., Krause, L., Bruttin, A., Molina, J., Paris, A., Want, E. J., de Waziers, I., Cloarec, O., Richards, S. E., Wang, Y., Dumas, M.-E., Ross, A., Rezzi, S., Kochhar, S., Van Bladeren, P., Lindon, J. C., Holmes, E. and Nicholson, J. K. (2011) Colonization-induced host-gut microbial metabolic interaction. mBio, 2 (2). e00271-10. ISSN 2150-7511 doi: https://doi.org/10.1128/mBio.00271-10

Costabile, A., Sanghi, S., Martin-Palaez, S., Mueller-Harvey, I., Gibson, G. R., Rastall, R. A. and Klinder, A. (2011) Inhibition of Salmonella Typhimurium by tannins in vitro. Journal of Food, Agriculture & Environment, 9 (1). pp. 119-124. ISSN 1459-0263

Cottell, J. L., Webber, M. A., Coldham, N. G., Taylor, D. L., Cerdeno-Tarraga, A. M., Hauser, H., Thomson, N. R., Woodward, M. and Piddock, L. J. V. (2011) Complete sequence and molecular epidemiology of IncK epidemic plasmid encoding bla(CTX-M-14). Emerging Infectious Diseases, 17 (4). pp. 645-652. ISSN 1080-6040 doi: https://doi.org/10.3201/eid1704.101009

Cysneiros, D., Banks, C. J., Heaven, S. and Karatzas, K.-A. G. (2011) The role of phase separation and feed cycle length in leach beds coupled to methanogenic reactors for digestion of a solid substrate (Part 2): Hydrolysis, acidification and methanogenesis in a two-phase system. Bioresource Technology, 102 (16). pp. 7393-7400. ISSN 0960-8524 doi: https://doi.org/10.1016/j.biortech.2011.05.042

Drakoularakou, A., Rastall, R. and Gibson, G. (2011) Functional foods for the gut: probiotics, prebiotics and synbiotics. In: Saarela, M. (ed.) Functional foods: concept to product. Second edition. Woodhead publishing series in food science, technology and nutrition (205). Woodhead Publishing Ltd, pp. 449-470. ISBN 9781845696900

Ellero-Simatos, S., Claus, S. P., Benelli, C., Forest, C., Letourneur, F., Cagnard, N., Beaune, P. H. and de Waziers, I. (2011) Combined transcriptomic-(1)H NMR metabonomic study reveals yhat monoethylhexyl phthalate stimulates adipogenesis and glyceroneogenesis in human adipocytes. Journal of Proteome Research, 10 (12). pp. 5493-5502. ISSN 1535-3907 doi: https://doi.org/10.1021/pr200765v

Falchero, L., Brown, R., Hanley, S., Karp, A., Shield, I. and Mueller-Harvey, I. (2011) The structural diversity of condensed tannins in willows (salix spp.): a frist screening to improve the nutritional quality of ruminant products. Advances in Animal Biosciences, 2 (2). p. 410. ISSN 2040-4719

Fogliano, V., Corollaro, M. L., Vitaglione, P., Napolitano, A., Ferracane, R., Travaglia, F., Arlorio, M., Costabile, A., Klinder, A. and Gibson, G. (2011) In vitro bioaccessibility and gut biotransformation of polyphenols present in the water-insoluble cocoa fraction. Molecular Nutrition & Food Research, 55 (Supplement). pp. 44-55. ISSN 1613-4125 doi: https://doi.org/10.1002/mnfr.201000360

Gibson, G., (2011) Probiotics and prebiotics. The Biomedical & Life Sciences Collection, Henry Stewart Talks Ltd, London.

Gibson, G. R., Brummer , R. J., Isolauri , E., Lochs , H., Morelli, L., Ockhuizen, T., Rowland, I. R., Schrenzenmeir, J., Stanton, C. and Verbeke, K. (2011) The design of probiotic studies to substantiate health claims. Gut Microbes, 2 (5). pp. 299-305. ISSN 1949-0984 doi: https://doi.org/10.4161/gmic.2.5.18002

Givens, D. I., Gibbs, R. A., Rymer, C. and Brown, R. H. (2011) Effect of intensive vs. free range production on the fat and fatty acid composition of whole birds and edible portions of retail chickens in the UK. Food Chemistry, 127 (4). pp. 1549-1554. ISSN 0308-8146 doi: https://doi.org/10.1016/j.foodchem.2011.02.016

Guarner, F., Sanders, M. E., Gibson, G., Klaenhammer , T., Cabana, M., Scott, K., Reid, G., Delzenne, N. M., Fahey, G. and Hill, C. (2011) Probiotic and prebiotics claims in Europe: Seeking a clear roadmap. British Journal of Nutrition, 106 (11). pp. 1765-1767. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114511002248

Hatew, B., Pellikaan, W. F., Hendriks, W. H., Mueller-Harvey, I. and Stringano, E. (2011) Effects of condensed tannin extracts from sainfoin (Onobrychis viciifolia Scop) on rumen in vitro methane production and fermentation characteristics. Advances in Animal Biosciences, 2 (2). p. 526. ISSN 2040-4719 doi: http://journals.cambridge.org/action/displayIssue?decade=2010&jid=ABS&volumeId=2&issueId=02&iid=8351771

Heath, P. and Claus, S. (2011) Assessing hepatic metabolic changes during progressive colonization of germ-free mouse by 1H NMR spectroscopy. Journal of Visualized Experiments, 58. ISSN 1940-087X doi: https://doi.org/10.3791/3642

Heath, P. and Claus, S. (2011) Assessing hepatic metabolic changes during progressive colonization of germ-free mouse by 1H NMR spectroscopy. [Video]

Honda, H., Gibson, G. R., Farmer, S., Keller, D. and McCartney, A. L. (2011) Use of a continuous culture fermentation system to investigate the effect of GanedenBC30 (Bacillus coagulans GBI-30, 6086) supplementation on pathogen survival in the human gut microbiota. Anaerobe, 17 (1). pp. 36-42. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2010.12.006

Honda, H., Hoyles, L., Gibson, G. R., Farmer, S., Keller, D. and McCartney, A. L. (2011) Impact of GanedenBC30 (Bacillus coagulans GBI-30, 6086) on population dynamics of the human gut microbiota in a continuous culture fermentation system. International Journal of Probiotics and Prebiotics, 6 (1). pp. 65-72. ISSN 1555-1431

Inness, V. L., Khoo, C., Gross, K. L., Hoyles, L., Gibson, G. R. and McCartney, A. L. (2011) Use of static batch culture systems to investigate the fermentation effects of selected oligosaccharides and fibres by the canine faecal microbiota. International Journal of Probiotics and Prebiotics, 6 (1). pp. 57-64. ISSN 1555-1431

Jia, J., Frantz, N., Khoo, C., Gibson, G. R., Rastall, R. A. and McCartney, A. L. (2011) Investigation of the faecal microbiota of geriatric cats. Letters in Applied Microbiology, 53 (3). pp. 288-293. ISSN 1472-765X doi: https://doi.org/10.1111/j.1472-765X.2011.03105.x

Jia, J., Frantz, N., Khoo, C., Gibson, G. R., Rastall, R. A. and McCartney, A. L. (2011) Investigation of the faecal microbiota of kittens: monitoring bacterial succession and effect of diet. FEMS Microbiology Ecology, 78 (2). pp. 395-404. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2011.01172.x

Kolida, S. and Gibson, G. (2011) Synbiotics in health and disease. Food Science and Technology , 2. pp. 373-393.

Le, T. M. V., AbuOun, M., Morrison, V., Thomson, N., James, I. C., Woodward, M. J., Nguyen, V. V. C., Jeremy, F., Constance, S. and Stephen, B. (2011) Differential phenotypic and genotypic characteristics of qnrS1-harboring plasmids carried by hospital and community commensal enterobacteria. Antimicrobial Agents and Chemotherapy, 55 (4). pp. 1798-1802. ISSN 1098-6596 doi: https://doi.org/10.1128/aac.01200-10

Manolaraki, F., Smith, L., Hayot, C., Pelikaan, W., Halbwrith, H., Stich, K., Treutter, D., Regos, I., Mueller-Harvey, I., Stringano, E. and Hoste, H. (2011) Differences in anthelmintic activity of sainfoin (Onobrychis viciifoliae) depend on varieties: possible relationships with flavonoid composition. Advances in Animal Biosciences, 2 (2). p. 345. ISSN 2040-4719

Mappley, L. J., Tchorzewska, M. A., Cooley, W. A., Woodward, M. J. and La Ragione, R. M. (2011) Lactobacilli antagonize the growth, motility, and adherence of brachyspira pilosicoli: a potential intervention against avian intestinal spirochetosis. Applied and Environmental Microbiology, 77 (15). pp. 5402-5411. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.00185-11

Merrifield, C. A., Lewis, M., Claus, S. P., Beckonert, O. P., Dumas, M.-E., Duncker, S., Kochhar, S., Rezzi, S., Lindon, J. C., Bailey, M., Holmes, E. and Nicholson, J. K. (2011) A metabolic system-wide characterisation of the pig: a model for human physiology. Molecular Biosystems, 7 (9). pp. 2577-2588. ISSN 1742-206X doi: https://doi.org/10.1039/c1mb05023k

Mueller-Harvey, I., Martin-Lorenzo , M., Stringano, E., Barnes, R. J., Oliver, J., Theodoridou, K., Aufrere, J., Bayissa, C., Pellikaan, W., Manolaraki, F., Hoste, F., Hayot Carbonero, C. and Smith, L. (2011) NIR spectroscopy for predicting the nutritional, anthelminitic and environmental effects of sainfoin. Advances in Animal Biosciences, 2 (2). p. 265. ISSN 2040-4719

Mulder, I., Schmidt, B., Lewis, M., Delday, M., Stokes, C., Bailey, M., Aminov, R., Gill, B., Pluske, J., Mayer, C.-D. and Kelly, D. (2011) Restricting microbial exposure in early life negates the immune benefits associated with gut colonization in environments of high microbial diversity. PLoS ONE, 6 (12). e28279. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0028279

O'Byrne, C.P. , Feehily, C. , Ham, R. and Karatzas, K.-A. G. (2011) A modified rapid enzymatic microtiter plate assay for the quantification of intracellular γ-aminobutyric acid and succinate semialdehyde in bacterial cells. Journal of Microbiological Methods, 84 (1). pp. 137-139. ISSN 0167-7012 doi: https://doi.org/10.1016/j.mimet.2010.10.017

Ogué-Bon, E., Khoo, C., Hoyles, L., McCartney, A. L., Gibson, G. R. and Rastall, R. A. (2011) In vitro fermentation of rice bran combined with Lactobacillus acidophilus 14 150B or Bifidobacterium longum 05 by the canine faecal microbiota. FEMS microbiology ecology, 75 (3). pp. 365-376. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2010.01014.x

Patil, S., Valdramidis, V. P., Karatzas, K. A. G., Cullen, P. J. and Bourke, P. (2011) Assessing the microbial oxidative stress mechanism of ozone treatment through the responses of Escherichia coli mutants. Journal of Applied Microbiology, 111 (1). pp. 136-144. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2011.05021.x

Pellikaan, W. F., Stringano, E., Leenaars, J., Bongers, D. J. G. M., Van Laar-Van Schuppen, S., Plant, J. and Mueller-Harvey, I. (2011) Evaluating the effects of tannins on the extent and rate of in vitro measured gas and methane production using the Automated Pressure Evaluation System (APES). Animal Feed Science and Technology, 166-167. pp. 377-390. ISSN 0377-8401 doi: https://doi.org/10.1016/j.anifeedsci.2011.04.072

Saunders, M. P., Wu, G., Abuoun, M., Pan, Z., Anjum, M. and Woodward, M. J. (2011) Optical genetic mapping defines regions of chromosomal variation in serovars of S. enterica subsp enterica of concern for human and animal health. Epidemiology and Infection, 139 (7). pp. 1065-1074. ISSN 0950-2688 doi: https://doi.org/10.1017/s0950268810002086

Schmidt, B., Mulder, I., Musk, C., Aminov, R., Lewis, M., Stokes, C., Bailey, M., Prosser, J., Gill, B., Plusk, J. and Kelly, D. (2011) Establishment of normal gut microbiota is compromised under excessive hygiene conditions. PLoS ONE, 6 (12). e28284. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0028284

Senior, N. J., Bagnall, M. C., Champion, O. L., Reynolds, S. E., La Ragione, R. M., Woodward, M. J., Salguero, F. J. and Titball, R. W. (2011) Galleria mellonella as an infection model for Campylobacter jejuni virulence. Journal of Medical Microbiology, 60 (5). pp. 661-669. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.026658-0

Shen, Q., Tuohy, K. M., Gibson, G. R. and Ward, R. E. (2011) In vitro measurement of the impact of human milk oligosaccharides on the faecal microbiota of weaned formula-fed infants compared to a mixture of prebiotic fructooligosaccharides and galactooligosaccharides. Letters in Applied Microbiology, 52 (4). pp. 337-343. ISSN 0266-8254 doi: https://doi.org/10.1111/j.1472-765X.2011.03005.x

Stringano, E., Cramer, R. ORCID: https://orcid.org/0000-0002-8037-2511, Hayes, W. ORCID: https://orcid.org/0000-0003-0047-2991, Smith, C., Gibson, T. and Mueller-Harvey, I. (2011) Deciphering the complexity of sainfoin (Onobrychis viciifolia) proanthocyanidins by MALDI-TOF mass spectrometry with a judicious choice of isotope patterns and matrixes. Analytical Chemistry, 83 (11). pp. 4147-4153. ISSN 0003-2700 doi: https://doi.org/10.1021/ac2003856

Stringano, E., Gea , A., Salminen, J.-P. and Mueller-Harvey, I. (2011) Simple solution for a complex problem: Proanthocyanidins, galloyl glucoses and ellagitannins fit on a single calibration curve in high performance-gel permeation chromatography. Journal of Chromatography A, 1218 (43). pp. 7804-7812. ISSN 0021-9673 doi: https://doi.org/10.1016/j.chroma.2011.08.082

Swann, J. R., Tuohy, K. M., Lindfors, P. , Brown , D. T., Gibson, G. R., Wilson, I. D., Sidaway, J., Nicholson, J. K. and Holmes, E. (2011) Variation in antibiotic-induced microbial recolonization impacts on the host metabolic phenotypes of rats. Journal of Proteome Research, 10 (8). pp. 3590-3603. ISSN 1535-3907 doi: https://doi.org/10.1021/pr200243t

Swann, J. R., Want, E. J., Geier, F. M., Spagou, K., Wilson, I. D. , Sidaway, J. E., Nicholson, J. K. and Holmes, E. (2011) Systemic gut microbial modulation of bile acid metabolism in host tissue compartments. Proceedings of the National Academy of Sciences, 108 (Supplement). pp. 4523-4530. ISSN 1091-6490 doi: https://doi.org/10.1073/pnas.1006734107 (Microbes and Health Sackler Colloquium)

Tree, J. J., Roe, A. J., Flockhart, A., McAteer, S. P., Xu, X. F., Shaw, D., Mahajan, A., Beatson, S. A., Best, A., Lotz, S., Woodward, M. J., La Ragione, R., Murphy, K. C., Leong, J. M. and Gally, D. L. (2011) Transcriptional regulators of the GAD acid stress island are carried by effector protein-encoding prophages and indirectly control type III secretion in enterohemorrhagic Escherichia coli O157:H7. Molecular Microbiology, 80 (5). pp. 1349-1365. ISSN 0950-382X doi: https://doi.org/10.1111/j.1365-2958.2011.07650.x

Tzounis, X., Rodriguez Mateos, A., Vulevic, J., Gibson, G. R., Kwik-Uribe, C. and Spencer, J. P. E. (2011) Prebiotic evaluation of cocoa-derived flavanols in healthy humans by using a randomized, controlled, double-blind, crossover intervention study. American Journal of Clinical Nutrition, 93 (1). pp. 62-72. ISSN 1938-3207 doi: https://doi.org/10.3945/ajcn.110.000075

Veereman-Wauters, G., Staelens, S., Van de Broek, H., Plaskie, K., Wesling, F., Roger, L. C., McCartney, A. L. and Assam, P. (2011) Physiological and bifidogenic effects of prebiotic supplements in infant formulae. Journal of Pediatric Gastroenterology and Nutrition, 52 (6). pp. 763-771. ISSN 0277-2116 doi: https://doi.org/10.1097/MPG.0b013e3182139f39

Wallace, T. C., Guarner, F., Madsen, K., Cabana, M., Gibson, G., Hentges, E. and Sanders, M. E. (2011) Human gut microbiota and its relationship to health and disease. Nutrition Reviews, 69 (7). pp. 392-403. ISSN 1753-4887 doi: https://doi.org/10.1111/j.1753-4887.2011.00402.x

2010

Abecia, L., Hoyles, L., Khoo, C., Frantz, N. and McCartney, A. L. (2010) Effects of a novel galactooligosaccharide on the faecal microbiota of healthy and inflammatory bowel disease cats during a randomized, double-blind, cross-over feeding study. International Journal of Probiotics and Prebiotics, 5 (2). pp. 61-68. ISSN 1555-1431

Abecia, L., McCartney, A. L. and Klinder, A. (2010) In vitro investigation of the effects of tryptophan fermentation products on immune response. Proceedings of the Nutrition Society, 69 (OCE3). E262. ISSN 0029-6651 doi: https://doi.org/10.1017/S0029665110000510

Beards, E., Tuohy, K. M. and Gibson, G. R. (2010) Bacterial, SCFA and gas profiles of a range of food ingredients following in vitro fermentation by human colonic microbiota. Anaerobe, 16 (4). pp. 420-425. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2010.05.006

Beards, E., Tuohy, K. M. and Gibson, G. R. (2010) A human volunteer study to assess the impact of confectionery sweeteners on the gut microbiota composition. British Journal of Nutrition, 104 (5). pp. 701-708. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114510001078

Bialonska, D., Ramnani, P., Kasimsetty, S. G., Muntha, K. R., Gibson, G. R. and Ferreira, D. (2010) The influence of pomegranate by-product and punicalagins on selected groups of human intestinal microbiota. International Journal of Food Microbiology, 140 (2-3). pp. 175-182. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2010.03.038

Champion, O. L., Karlyshev, A. V., Senior, N. J., Woodward, M. J., La Ragione, R., Howard, S. L., Wren, B. W. and Titball, R. W. (2010) Insect infection model for campylobacter jejuni reveals that O-methyl phosphoramidate has insecticidal activity. Journal of Infectious Diseases, 201 (5). pp. 776-782. ISSN 0022-1899 doi: https://doi.org/10.1086/650494

Coldham, N. G., Webber, M., Woodward, M. J. and Piddock, L. J. V. (2010) A 96-well plate fluorescence assay for assessment of cellular permeability and active efflux in Salmonella enterica serovar Typhimurium and Escherichia coli. Journal of Antimicrobial Chemotherapy, 65 (8). pp. 1655-1663. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkq169

Collins , J. W., Coldham , N. G., Salguero, F. J., Cooley, W. A., Newell, W. R., Rastall, R. A., Gibson, G. R., Woodward, M. J. and LaRagione, R. M. (2010) Response of porcine intestinal in vitro organ culture tissues following exposure to Lactobacillus plantarum JC1 and Salmonella Typhimurium SL1344. Applied and Environmental Microbiology, 76 (19). pp. 6645-6657. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.03115-09

Costabile, A., Kolida, S., Klinder, A., Gielt, E., Bäuerlein, M., Frohberg, C., Landschütze, V. and Gibson, G. R. (2010) A double-blind, placebo-controlled, cross-over study to establish the bifidogenic effect of a very-long-chain inulin extracted from globe artichoke (Cynara scolymus) in healthy human subjects. British Journal of Nutrition, 104 (7). pp. 1007-1017. ISSN 1475-2662 doi: https://doi.org/10.1017/S0007114510001571

Delsol, A. A., Halfhide, D. E., Bagnall, M. C., Randall, L. P., Enne, V. I., Woodward, M. J. and Roe, J. M. (2010) Persistence of a wild type Escherichia coli and its multiple antibiotic-resistant (MAR) derivatives in the abattoir and on chilled pig carcasses. International Journal of Food Microbiology, 140 (2-3). pp. 249-253. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2010.03.023

Devetyarov, D., Woodward, M. J., Coldham, N., Anjum, M. and Gammerman, A. (2010) A new bioinformatics tool for prediction with confidence. In: International Conference on Bioinformatics Computational Biology, BIOCOMP 2010, July 12-15, 2010, Las Vegas Nevada, USA.

Drakoularakou, A., Tzortzis, G., Rastall, R. A. and Gibson, G. R. (2010) A double-blind, placebo-controlled, randomized human study assessing the capacity of a novel galacto-oligosaccharide mixture in reducing travellers' diarrhoea. European Journal of Clinical Nutrition, 64. pp. 146-152. ISSN 1476-5640 doi: https://doi.org/10.1038/ejcn.2009.120

Fenner, J. S., Anjum, M. F., Randall, L. P., Pritchard, G. C., Wu, G., Errington, J., Dailey, C. G. and Woodward, M. J. (2010) Analysis of 16S rDNA sequences from pathogenic Leptospira serovars and use of single nucleotide polymorphisms for rapid speciation by D-HPLC. Research in Veterinary Science, 89 (1). pp. 48-57. ISSN 0034-5288 doi: https://doi.org/10.1016/j.rvsc.2009.12.014

Gibson, G. R., Scott, K. P., Rastall, R. A., Tuohy, K. M., Hotchkiss, A., Dubert-Ferrandon, A., Gareau, M., Murphy, E. F., Saulnier, D., Loh, G., Macfarlane , S., Delzenne, N., Ringel, Y., Kozianowski, G., Dickmann, R., Lenoir-Wijnkook, I., Walker, C. and Buddington, R. (2010) Dietary prebiotics: current status and new definition. Food Science and Technology Bulletin: Functional Foods, 7. pp. 1-19.

Gomez, E., Tuohy, K.M., Gibson, G.R., Klinder, A. and Costabile, A. (2010) In vitro evaluation of the fermentation properties and potential prebiotic activity of Agave fructans. Journal of Applied Microbiology, 108 (6). pp. 2114-2121. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2009.04617.x

Hoyles, L. and Wallace, R. J. (2010) Gastrointestinal tract: fat metabolism in the colon. In: Timmis, K. N. (ed.) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin, pp. 3111-3118. ISBN 9783540775843 doi: https://doi.org/10.1007/978-3-540-77587-4_233

Hoyles, L. and Wallace, R.J. (2010) Gastrointestinal tract: intestinal fatty acid metabolism and implications for health. In: Timmis, K. (ed.) Handbook of hydrocarbon and lipid microbiology. Springer, Berlin, pp. 3119-3132. ISBN 9783540775843 doi: https://doi.org/10.1007/978-3-540-77587-4_234

Huehn, S., La Ragione, R. M., Anjum, M., Saunders, M., Woodward, M. J., Bunge, C., Helmuth, R., Hauser, E., Guerra, B., Beutlich, J., Brisabois, A., Peters, T., Svensson, L., Madajczak, G., Litrup, E., Imre, A., Herrera-Leon, S., Mevius, D., Newell, D. G. and Malorny, B. (2010) Virulotyping and antimicrobial resistance typing of salmonella enterica serovars relevant to human health in Europe. Foodborne Pathogens and Disease, 7 (5). pp. 523-535. ISSN 1535-3141 doi: https://doi.org/10.1089/fpd.2009.0447

Inman, C., Singha, S., Lewis, M., Bradley, B., Stokes, C. and Bailey, M. (2010) Dendritic cells interact with CD4 T cells in intestinal mucosa. Journal of Leukocyte Biology, 88 (3). pp. 571-578. ISSN 1938-3673 doi: https://doi.org/10.1189/jlb.0310161

Jia, J., Frantz, N., Khoo, C., Gibson, G. R., Rastall, R. A. and McCartney, A. L. (2010) Investigation of the faecal microbiota associated with canine chronic diarrhoea. FEMS Microbiology Ecology, 71 (2). pp. 304-12. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2009.00812.x

Karatzas, K.-A. G., Breannan, O., Heavin, S., Morrisey, J. and O'Byrne, C. O. (2010) Intracellular accumulation of high levels of gamma-aminobutyrate by Listeria monocytogenes 10403S in response to low pH: uncoupling of gamma-aminobutyrate synthesis from efflux in a chemically defined medium. Applied and Environmental Microbiology, 76 (11). pp. 3529-3537. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.03063-09

Kauko, T., Haukka, K., AbuOun, M., Anjum, M. F., Woodward, M. J. and Siitonen, A. (2010) Phenotype MicroArray (TM) in the metabolic characterisation of Salmonella serotypes Agona, Enteritidis, Give, Hvittingfoss, Infantis, Newport and Typhimurium. European Journal of Clinical Microbiology & Infectious Diseases, 29 (3). pp. 311-317. ISSN 0934-9723 doi: https://doi.org/10.1007/s10096-009-0859-5

Keller, D., Farmer, S., McCartney, A. and Gibson, G. (2010) Bacillus coagulans as a probiotic. Food Science and Technology Bulletin: Functional Foods. ISSN 1476-2137

Klotz, B., Manas, P. and Mackey, B. M. (2010) The relationship between membrane damage, release of protein and loss of viability in Escherichia coli exposed to high hydrostatic pressure. International Journal of Food Microbiology, 137 (2-3). pp. 214-220. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2009.11.020

Lahtinen, S. J., Knoblock, K., Drakoularakou, A., Jacob, M., Stowell, J., Gibson, G. R. and Ouwehand, A. C. (2010) Effect of molecule branching and glycosidic linkage on the degradation of polydextrose by gut microbiota. Bioscience, Biotechnology, and Biochemisty , 74 (10). pp. 2016-2021. ISSN 1347-6947 doi: https://doi.org/10.1271/bbb.100251

Lewis, M., Inman, C. F. and Bailey, M. (2010) Postnatal development of the mucosal immune system and consequences on health in adulthood. Canadian Journal of Animal Science, 90 (2). pp. 129-136. ISSN 1918-1825 doi: https://doi.org/10.4141/CJAS09112

Maccaferri, S., Vitali, B., Klinder, A., Kolida, S., Ndagijimana, M., Laghi, L., Calanni, F., Brigidi, P., Gibson, G. R. and Costabile, A. (2010) Rifaximin modulates the colonic microbiota of patients with Crohn's disease: an in vitro approach using a continuous culture colonic model system. Journal of Antimicrobial Chemotherapy, 65 (12). pp. 2556-2565. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkq345

Mueller-Harvey, I., Botchway, S., Feucht, W., Polster, J., Burgos, P. and Parker, A. (2010) Fluorescence lifetime imaging microscopy (FLIM) to demonstrate the nuclear binding of flavanols and (--epigallocatechin gallate. Planta Medica, 76 (12). O_7. ISSN 1439-0221 doi: https://doi.org/10.1055/s-0030-1264193

Ogué-Bon, E., Khoo, C., McCartney, A. L., Gibson, G. R. and Rastall, R. A. (2010) In vitro effects of synbiotic fermentation on the canine faecal microbiota. FEMS microbiology ecology, 73 (3). pp. 587-600. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2010.00915.x

Parracho, H. M. R. T., Gibson, G. R., Knott, F. , Bosscher, D., Kleerebezem, M. and McCartney, A. L. (2010) A double-blind, placebo-controlled, crossover-designed probiotic feeding study in children diagnosed with autistic spectrum disorders. International Journal of Probiotics and Prebiotics, 5 (2). pp. 69-74. ISSN 1555-1431

Ramnani, P., Gaudier , E., Bingham , M., van Bruggen , P., Tuohy, K. M. and Gibson, G. R. (2010) Prebiotic effect of fruit and vegetable shots containing Jerusalem artichoke inulin : a human intervention study. British Journal of Nutrition, 104 (2). pp. 233-240. ISSN 1475-2662 doi: https://doi.org/10.1017/S000711451000036X

Ramnani, P., Jarvis, B. and Mackey, B. M. (2010) Comparison between pre-enrichment in single- or double-strength buffered peptone water for recovery of Salmonella enterica serovar Typhimurium DT104 from acidic marinade sauces containing spices. Food Control, 21 (9). pp. 1303-1306. ISSN 0956-7135 doi: https://doi.org/10.1016/j.foodcont.2010.03.005

Roberfroid, M., Gibson, G. R., Hoyles, L., McCartney, A. L., Rastall, R., Rowland, I., Wolvers, D., Watztl, B., Szajewska, H., Stahl, B., Guarner, F., Respondek, F., Whelan, K., Coxam, V., Davicco, M., Léotoing, L., Wittrant, Y., Delzenne, N., Cani, P., Neyrinck, A. and Meheust, A. (2010) Prebiotic effects: metabolic and health benefits. British Journal of Nutrition, 104 (S2). S1-S63. ISSN 0007-1145 doi: https://doi.org/10.1017/S0007114510003363

Roger, L. C. and McCartney, A. L. (2010) Longitudinal investigation of the faecal microbiota of healthy full-term infants using fluorescence in situ hybridization and denaturing gradient gel electrophoresis. Microbiology, 156 (11). pp. 3317-3328. ISSN 1465-2080 doi: https://doi.org/10.1099/mic.0.041913-0

Roger, L. C., Costabile, A., Holland, D. T., Hoyles, L. and McCartney, A. L. (2010) Examination of faecal Bifidobacterium populations in breast- and formula-fed infants during the first 18 months of life. Microbiology, 156 (11). pp. 3329-3341. ISSN 1465-2080 doi: https://doi.org/10.1099/mic.0.043224-0

Rooks, D. J., Smith, D. L., McDonald, J. E., Woodward, M. J., McCarthy, A. J. and Allison, H. E. (2010) 454-pyrosequencing: a molecular battiscope for freshwater viral ecology. Genes, 1 (2). pp. 210-226. ISSN 2073-4425 doi: https://doi.org/10.3390/genes1020210

Rooks, D. J., Yan, Y. X., McDonald, J. E., Woodward, M. J., McCarthy, A. J. and Allison, H. E. (2010) Development and validation of a qPCR-based method for quantifying Shiga toxin-encoding and other lambdoid bacteriophages. Environmental Microbiology, 12 (5). pp. 1194-1204. ISSN 1462-2912 doi: https://doi.org/10.1111/j.1462-2920.2010.02162.x

Sagarzazu, N., Cebrián, G., Condón, S., Mackey, B. M. and Mañas, P. (2010) High hydrostatic pressure resistance of Campylobacter jejuni after different sublethal stresses. Journal of Applied Microbiology, 109 (1). pp. 146-155. ISSN ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2009.04639.x

Sargeant, H. R., Shaw, M. A., AbuOun, M., Collins, J. W., Woodward, M. J., La Ragione, R. M. and Miller, H. M. (2010) The metabolic impact of zinc oxide on porcine intestinal cells and enterotoxigenic Escherichia coli K88. Livestock Science, 133 (1-3). pp. 45-48. ISSN 1871-1413 doi: https://doi.org/10.1016/j.livsci.2010.06.021

Saric, J., Li, J. V., Swann, J., Utzinger, J., Calvert, G., Nicholson, J. K., Dirnhofer, S., Dallman, M. J., Bictash, M. and Holmes, E. (2010) Integrated cytokine and metabolic analysis of pathological responses to parasite exposure in rodents. Journal of Proteome Research, 9 (5). pp. 2255-2264. ISSN 1535-3893 doi: https://doi.org/10.1021/pr901019z

Searle, L. E. J., Cooley, W. A., Jones, G., Nunez, A., Crudgington, B., Weyer, U., Dugdale, A. H., Tzortzis, G., Collins, J. W., Woodward, M. and La Ragione, R. M. (2010) Purified galactooligosaccharide, derived from a mixture produced by the enzymic activity of Bifidobacterium bifidum, reduces Salmonella enterica serovar Typhimurium adhesion and invasion in vitro and in vivo. Journal of Medical Microbiology, 59 (12). pp. 1428-1439. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.022780-0

Somolinos, M., García, D., Condón, S., Mackey, B. M. and Pagán, R. (2010) Inactivation of Escherichia coli by citral. Journal of Applied Microbiology, 108 (6). 1928-1939.. ISSN ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2009.04597.x

Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635 and Gibson, G. R. (2010) Gut microbiota, probiotics, prebiotics and colorectal cancer. In: Milner, J. A. and Romagnolo, D. F. (eds.) Bioactive compounds and cancer. Humana Press/Springer , pp. 181-193. doi: https://doi.org/10.1007/978-1-60761-627-6

Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Lim, Y., Ng, Y., Hannah, R. and Hunter, K. (2010) Prebiotics and probiotics: potential strategies for reducing travellers' diarrhoea in athletes competing abroad. Food Science and Technology Bulletin: Functional Foods, 6 (9). pp. 105-114. ISSN 1476-2137

Walton, G. E. ORCID: https://orcid.org/0000-0001-5426-5635, Rastall, R. A., Martini, M., Williams, C., Jeffries, R. and Gibson, G. R. (2010) A double-blind, placebo controlled human study investigating the effects of coffee derived manno-oligosaccharides on the faecal microbiota of a healthy adult population. International Journal of Probiotics and Prebiotics, 5 (2). pp. 75-84. ISSN 1555-1431

Wu, G. H., AbuOun, M., Hackl, E., La Ragione, R. M., Fookes, M., Fenner, J., Pan, Z. S., Wenzl, P., Anjum, M. F. and Woodward, M. J. (2010) Epidemic multidrug-resistant (MDR-AmpC) Salmonella enterica serovar Newport strains contain three phage regions and a MDR resistance plasmid. Environmental Microbiology Reports, 2 (2). pp. 228-235. ISSN 1758-2229 doi: https://doi.org/10.1111/j.1758-2229.2009.00095.x

Wu, G., Mafura, M., Carter, B., Lynch, K., Anjum, M. F., Woodward, M. J. and Pritchard, G. C. (2010) Genes associated with Escherichia coli isolates from calves with diarrhoea and/or septicaemia. Veterinary Record, 166 (22). pp. 691-692. ISSN 0042-4900 doi: https://doi.org/10.1136/vr.b4791

2009

AbuOun, M., Suthers, P. F., Jones, G. I., Carter, B. R., Saunders, M. P., Maranas, C. D., Woodward, M. J. and Anjum, M. F. (2009) Genome scale reconstruction of a Salmonella metabolic model comparison of similarity and differences with a commensal Escherichia coli strain. The Journal of Biological Chemistry, 284 (43). pp. 29480-29488. ISSN 1083-351X doi: https://doi.org/10.1074/jbc.M109.005868

Aktan, I., Woodward, M. and La Ragione, R. M. (2009) Interaction between attaching-effacing Escherichia coli O26:K60 and O157:H7 in young lambs. Research in Veterinary Science, 87 (1). pp. 13-15. ISSN 0034-5288 doi: https://doi.org/10.1016/j.rvsc.2008.11.006

Bailey, A. M., Constantinidou, C., Ivens, A., Garvey, M. I., Webber, M. A., Coldham, N., Hobman, J. L., Wain, J., Woodward, M. J. and Piddock, L. J. V. (2009) Exposure of Escherichia coli and Salmonella enterica serovar Typhimurium to triclosan induces a species-specific response, including drug detoxification. Journal of Antimicrobial Chemotherapy, 64 (5). pp. 973-985. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkp320

Best, A., Clifford, D., Crudgington, B., Cooley, W. A., Nunez, A., Carter, B., Weyer, U., Woodward, M. J. and La Ragione, R. M. (2009) Intermittent Escherichia coli O157:H7 colonisation at the terminal rectum mucosa of conventionally-reared lambs. Veterinary Research, 40 (1). 40:09. ISSN 0928-4249 doi: https://doi.org/10.1051/vetres:2008047

Blair, J. M. A., La Ragione, R. M., Woodward, M. J. and Piddock, L. J. V. (2009) Periplasmic adaptor protein AcrA has a distinct role in the antibiotic resistance and virulence of Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 64 (5). pp. 965-972. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkp311

Collins, J. W., La Ragione, R. M., Woodward, M. J. and Searle, L. E. J. (2009) Application of pre- and probiotics in livestock. In: Charalampopoulos, D. ORCID: https://orcid.org/0000-0003-1269-8402 and Rastall, R. A. (eds.) Prebiotics and Probiotics Science and Technology. Springer-Verlag, New York, pp. 57-88. ISBN 9780387790572

Cox, R., Woodward, M. J. and Clough, H. E. (2009) The epidemiology of antimicrobial resistance in incidents of nontyphoidal Salmonella isolates from livestock in the UK: trends, seasonality and changes. In: International Symposia on Veterinary Epidemiology and Economics.

Duarte, I. F., Legido-Quigley, C., Parker, D. A., Swann, J., Spraul, M., Braumann, U., Gil, A. M., Holmes, E., Nicholson, J. K., Murphy, G. M., Vilca-Melendez, H., Heaton, N. and Lindon, J. C. (2009) Identification of metabolites in human hepatic bile using 800 MHz 1H NMR spectroscopy, HPLC-NMR/MS and UPLC-MS. Molecular Biosystems, 5. pp. 180-190. ISSN 1742-206X doi: https://doi.org/10.1039/B814426E

Eveillard, A., Lasserre, F., de Tayrac, M., Polizzi, A., Claus, S., Canlet, C., Mselli-Lakhal, L., Gotardi, G., Paris, A., Guillou, H., Martin, P. G. P. and Pineau, T. (2009) Identification of potential mechanisms of toxicity after di-(2-ethylhexyl)-phthalate (DEHP) adult exposure in the liver using a systems biology approach. Toxicology and applied pharmacology, 236 (3). pp. 282-292. ISSN 0041-008X doi: https://doi.org/10.1016/j.taap.2009.02.008

Hoyles, L. (2009) In vitro examination of the effect of Orlistat on the ability of the faecal microbiota to utilize dietary lipids. PhD thesis, University of Reading.

Hoyles, L. and McCartney, A. L. (2009) What do we mean when we refer to Bacteroidetes populations in the human gastrointestinal microbiota? FEMS Microbiology Letters, 299 (2). pp. 175-183. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.2009.01741.x

La Ragione, R. M., Best, A., Woodward, M. J. and Wales, A. D. (2009) Escherichia coli O157:H7 colonization in small domestic ruminants. FEMS Microbiology Reviews, 33 (2). pp. 394-410. ISSN 1574-6976 doi: https://doi.org/10.1111/j.1574-6976.2008.00138.x

Mahajan, A., Currie, C. G., Mackie, S., Tree, J., McAteer, S., McKendrick, I., McNeilly, T. N., Roe, A., La Ragione, R. M., Woodward, M. J., Gally, D. L. and Smith, D. G. E. (2009) An investigation of the expression and adhesin function of H7 flagella in the interaction of Escherichia coli O157: H7 with bovine intestinal epithelium. Cellular Microbiology, 11 (1). pp. 121-137. ISSN 1462-5814 doi: https://doi.org/10.1111/j.1462-5822.2008.01244.x

Mulder, I., Schmidt, B., Stokes, C., Lewis, M. C.,, Bailey, M., Aminov, R., Prosser, J., Gill, B., Pluske, J., Mayer, C.-D., Musk, C. and Kelly, D. (2009) Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces. BMC Biology, 7 (79). ISSN 1741-7007 doi: https://doi.org/10.1186/1741-7007-7-79

Pan, Z. S., Carter, B., Nunez-Garcia, J., AbuOun, M., Fookes, M., Ivens, A., Woodward, M. J. and Anjum, M. F. (2009) Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport. Microbiology-Sgm, 155. pp. 3200-3213. ISSN 1350-0872 doi: https://doi.org/10.1099/mic.0.029405-0

Roger, L.C. and McCartney, A.L. (2009) The application of prebiotics and synbiotics in pediatrics. In: Michail, S. and Sherman, P.M. (eds.) Probiotics in pediatric medicine. Nutrition and health series. Humana, Totowa, New Jersey, pp. 307-322. ISBN 9781603272889 doi: https://doi.org/10.1007/978-1-60327-289-6

Salazar, N., Ruas-Madiedo, P., Kolida, S., Collins, M., Rastall, R., Gibson, G. and de los Reyes-Gavilan, C.G. (2009) Exopolysaccharides produced by Bifidobacterium longum IPLA E44 and Bifidobacterium animalis subsp lactis IPLA R1 modify the composition and metabolic activity of human faecal microbiota in pH-controlled batch cultures. International Journal of Food Microbiology, 135 (3). pp. 260-267. ISSN 0168-1605 doi: https://doi.org/10.1016/j.ijfoodmicro.2009.08.017

Searle, L. E. J., Best, A., Nunez, A., Salguero, F. J., Johnson, L., Weyer, U., Dugdale, A. H., Cooley, W. A., Carter, B., Jones, G., Tzortzis, G., Woodward, M. J. and La Ragione, R. M. (2009) A mixture containing galactoollgosaccharide, produced by the enzymic activity of Bifidobacterium bifidum, reduces Salmonella enterica serovar Typhimurium infection in mice. Journal of Medical Microbiology, 58 (1). pp. 37-48. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.004390-0

Simons, R., Brouwer, A., Hill, A. and Woodward, M. J. (2009) Assessing the effectiveness of GB cattle surveillance in detecting new epidemic strains of Salmonella. In: International Symposia on Veterinary Epidemiology and Economics.

Swann, J., Wang, Y., Abecia, L., Costabile, A., Tuohy, K., Gibson, G., Roberts, D., Sidaway, J., Jones, H., Wilson, I. D., Nicholson, J. and Holmes, E. (2009) Gut microbiome modulates the toxicity of hydrazine: a metabonomic study. Molecular Biosystems, 5. pp. 351-355. ISSN 1742-206X

Verner-Jeffreys, D. W., Welch, T. J., Schwarz, T., Pond, M. J., Woodward, M. J., Haig, S. J., Rimmer, G. S. E., Roberts, E., Morrison, V. and Baker-Austin, C. (2009) High prevalence of multidrug-tolerant bacteria and associated antimicrobial resistance genes isolated from ornamental fish and their carriage water. PLoS ONE, 4 (12). e8388. ISSN 1932-6203 doi: https://doi.org/10.1371/journal.pone.0008388

Waldram, A., Holmes, E., Wang, Y.L., Rantalainen, M., Wilson, I.D., Tuohy, K.M., McCartney, A.L., Gibson, G.R. and Nicholson, J.K. (2009) Top-down systems biology modeling of host metabotype-microbiome associations in obese rodents. Journal of Proteome Research, 8 (5). pp. 2361-2375. ISSN 1535-3893 doi: https://doi.org/10.1021/pr8009885

Wragg, P., La Ragione, R. M., Best, A., Relchel, R., Anjum, M. F., Mafura, A. and Woodward, M. J. (2009) Characterisation of Escherichia fergusonii isolates from farm animals using an Escherichia coli virulence gene array and tissue culture adherence assays. Research in Veterinary Science, 86 (1). pp. 27-35. ISSN 0034-5288 doi: https://doi.org/10.1016/j.rvsc.2008.05.014

2008

Abram, F., Starr, E., Karatzas, K.-A. G., Wasowska-Matlawska, K., Boyd, A., Wiedmann, M., Boor, K. J., Connally, D. and O'Bryne, C. P. (2008) Identification of components of the Sigma B Regulon in Listeria monocytogenes that contribute to acid and salt tolerance. Applied and Environmental Microbiology, 74 (22). pp. 6848-6858. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.00442-08

Abram, F., Su, W.-L. , Wiedmann, M., Boor, K. J., Coote, P., Botting, C. , Karatzas, K.-A. and O'Byrne, C. P. (2008) Proteomic analyses of a Listeria monocytogenes mutant lacking σB identify new components of the σB regulon and highlight a role for σB in the utilization of glycerol. Applied and Environmental Microbiology, 74 (3). pp. 594-604. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.01921-07

Batchelor, M., Hopkins, K. L., Liebana, E., Slickers, P., Ehricht, R., Mafura, M., Aarestrup, F., Mevius, D., Clifton-Hadley, F. A., Woodward, M. J., Davies, R. H., Threlfall, E. J. and Anjum, M. F. (2008) Development of a miniaturised microarray-based assay for the rapid identification of antimicrobial resistance genes in Gram-negative bacteria. International Journal of Antimicrobial Agents, 31 (5). pp. 440-451. ISSN 0924-8579 doi: https://doi.org/10.1016/j.ijantimicag.2007.11.017

Boyle, F.G., Lien, E.L., Wrenn, J.M., Marsh, B.B., Anderson, W.I., Angelosanto, F.A. and McCartney, A.L. (2008) Safety evaluation of oligofructose: 13 Week rat study and in vitro mutagenicity. Food and Chemical Toxicology, 46 (9). pp. 3132-3139. ISSN 0278-6915 doi: https://doi.org/10.1016/j.fct.2008.06.079

Carter, B., Wu, G. H., Woodward, M. J. and Anjum, M. F. (2008) A process for analysis of microarray comparative genomics hybridisation studies for bacterial genomes. Bmc Genomics, 9. ISSN 1471-2164 doi: https://doi.org/10.1186/1471-2164-9-53

Cartman, S. T., La Ragione, R. M. and Woodward, M. J. (2008) Bacillus subtilis spores germinate in the chicken gastrointestinal tract. Applied and Environmental Microbiology, 74 (16). pp. 5254-5258. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.00580-08

Claus, S. P., Tsang, T. M., Wang, Y., Cloarec, O., Skordi, E., Martin, F.-P., Rezzi, S., Ross, A., Kochhar, S., Holmes, E. and Nicholson, J. K. (2008) Systemic multicompartmental effects of the gut microbiome on mouse metabolic phenotypes. Molecular systems biology, 4 (219). ISSN 1744-4292 doi: https://doi.org/10.1038/msb.2008.56

Enne, V. I., Cassar, C., Sprigings, K., Woodward, M. J. and Bennett, P. M. (2008) A high prevalence of antimicrobial resistant Escherichia coli isolated from pigs and a low prevalence of antimicrobial resistant E-coli from cattle and sheep in Great Britain at slaughter. FEMS Microbiology Letters, 278 (2). pp. 193-199. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.2007.00991.x

Fearnley, C., Wakeley, P. R., Gallego-Beltran, J., Dalley, C., Williamson, S., Gaudie, C. and Woodward, M. J. (2008) The development of a real-time PCR to detect pathogenic Leptospira species in kidney tissue. Research in Veterinary Science, 85 (1). pp. 8-16. ISSN 0034-5288 doi: https://doi.org/10.1016/j.rvsc.2007.09.005

Foster, A. R., Otter, A., Barlow, A. M., Pearson, G. R., Woodward, M. J. and Higgins, R. J. (2008) Naturally occurring intestinal lesions in three alpacas (Vicugna pacos) caused by attaching and effacing Escherichia coli. Veterinary Record, 162 (10). pp. 318-320. ISSN 0042-4900

Girard, F., Frankel, G., Phillips, A. D., Cooley, W., Weyer, U., Dugdale, A. H. A., Woodward, M. J. and La Ragione, R. M. (2008) Interaction of enterohemorrhagic Escherichia coli O157 : H7 with mouse intestinal mucosa. FEMS Microbiology Letters, 283 (2). pp. 196-202. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.2008.01166.x

Gougoulias, C., Sandaradura, S., Meng, X., Perz, A. C., Leeds, A. R. and Thomas, L. V. (2008) Changes in the intestinal microbiota after a short period of dietary over-indulgence, representative of a holiday or festival season. Food Science and Technology Bulletin: Functional Foods, 5 (5). pp. 51-59. ISSN 1476-2137

Hemrajani, C., Marches, O., Wiles, S., Girard, F., Dennis, A., Dziva, F., Best, A., Phillips, A. D., Berger, C. N., Mousnier, A., Crepin, V. F., Kruidenier, L., Woodward, M. J., Stevens, M. P., La Ragione, R. M., MacDonald, T. T. and Frankel, G. (2008) Role of NleH, a Type III Secreted Effector from Attaching and Effacing Pathogens, in Colonization of the Bovine, Ovine, and Murine Gut. Infection and Immunity, 76 (11). pp. 4804-4813. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.00742-08

Karatzas, K.-A. and O’Byrne, C. P. (2008) The role of sigma B (sB) in the stress adaptations of listeria monocytogenes: overlaps between stress adaptation and virulence. In: Laskin , A. I., Gadd , G. M. and Sariaslani , S. (eds.) Advances in Applied Microbiology. Academic Press, Elsevier, pp. 116-141. ISBN 9780123744296

Karatzas, K.-A. G., Hocking, P. M., Jørgensen, F., Mattick, K., Leach, S. and Humphrey, T. J. (2008) Effects of repeated cycles of acid challenge and growth on the phenotype and virulence of Salmonella enterica. Journal of Applied Microbiology, 105 (5). pp. 1640-1648. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2008.03909.x

Karatzas, K.-A. G., Randall, L. P., Webber, M., Piddock, L. J. V., Humphrey, T. J., Woodward, M. J. and Coldham, N. G. (2008) Phenotypic and proteomic characterization of multiply antibiotic-resistant variants of Salmonella entetica serovar typhimurium selected following exposure to disinfectants. Applied and Environmental Microbiology, 74 (5). pp. 1508-1516. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.01931-07

Lewis, M., Tarlton, J. F. and Cose, S. (2008) Memory versus naive T-cell migration. Immunology & Cell biology, 86 (3). pp. 226-231. ISSN 1440-1711 doi: https://doi.org/10.1038/sj.icb.7100132

Parracho, H.M.R.T., Saulnier, D.M., McCartney, A.L. and Gibson, G.R. (2008) Introduction to prebiotics. In: Versalovic, J. and Wilson, M. (eds.) Therapeutic microbiology: probiotics and other strategies. American Society for Microbiology Press, Washington, pp. 119-130. ISBN 9781555814038

Randall, L. P., Bagnall, M. C., Karatzas, K.-A., Coldham, N. C., Piddock, L. J. V. and Woodward, M. J. (2008) Fitness and dissemination of disinfectant-selected multiple-antibiotic-resistant (MAR) strains of Salmonella enterica serovar Typhimurium in chickens. Journal of Antimicrobial Chemotherapy, 61 (1). pp. 156-162. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkm415

Reid, G., Gibson, G. R., Sanders, M. E., Guarner, F. and Versalovic, J. (2008) Probiotic prophylaxis in predicted severe acute pancreatitis. Lancet, 372 (9633). pp. 112-113. ISSN 0140-6736 doi: https://doi.org/10.1016/S0140-6736(08)61024-7

Webber, M. A., Coldham, N. G., Woodward, M. J. and Piddock, L. J. V. (2008) Proteomic analysis of triclosan resistance in Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 62 (1). pp. 92-97. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkn138

Webber, M. A., Randall, L. P., Cooles, S., Woodward, M. J. and Piddock, L. J. V. (2008) Triclosan resistance in Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 62 (1). pp. 83-91. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkn137

Wu, G. H., Carter, B., Mafura, M., Liebana, E., Woodward, M. J. and Anjum, M. F. (2008) Genetic diversity among Escherichia coli O157 : H7 isolates and identification of genes linked to human infections. Infection and Immunity, 76 (2). pp. 845-856. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.00956-07

2007

Aktan, I., Carter, B., Wilking, H., La Ragione, R. M., Wieler, L., Woodward, M. J. and Anjum, M. F. (2007) Influence of geographical origin, host animal and stx gene on the virulence characteristics of Escherichia coli O26 strains. Journal of Medical Microbiology, 56 (11). pp. 1431-1439. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.47311-0

Aktan, I., Carter, B., Wilking, H., La Ragione, R. M., Woodward, M. J., Wieler, L. H. and Anjum, M. F. (2007) Escherichia coli O26 strains: influence of geography, host animal and stx gene on virulence characteristics. International Journal of Medical Microbiology, 297. p. 54. ISSN 1438-4221

Aktan, I., La Ragione, R. M. and Woodward, M. J. (2007) Colonization, persistence, and tissue tropism of Escherichia coli O26 in conventionally reared weaned lambs. Applied and Environmental Microbiology, 73 (3). pp. 691-698. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.01879-06

Aktan, I., La Ragione, R. M., Pritchard, G. C. and Woodward, M. J. (2007) Prevalence of attaching and effacing Escherichia coli serogroup 0103 in orphan lambs on an open farm in eastern England. Veterinary Record, 161 (11). pp. 386-388. ISSN 0042-4900 doi: https://doi.org/10.1136/vr.161.11.386

Anium, M. F., Mafura, M., Slickers, P., Ballmer, K., Kuhnert, P., Woodward, M. J. and Ehricht, R. (2007) Pathotyping Escherichia coli by using miniaturized DNA microarrays. Applied and Environmental Microbiology, 73 (17). pp. 5692-5697. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.00419-07

Cani, P., Neyrinck, A., Tuohy, K. M., Fava, F., Gibson, G. R., Knauf, C., Burcelin, R. and Delzenne, N. (2007) Fermentable carbohydrates reduce obesity and diabetes in mice fed a high fat diet. Annals of Nutrition and Metabolism, 51 (Suppl. 1). pp. 352-353. ISSN 0250-6807 doi: https://doi.org/10.1159/000105122 (special issue 'European Nutrition Conference')

Drakoularakou, A., Wells, A., Robinson, R.K., Rastall, B., Gibson, G. and McCartney, A. (2007) Acid and bile tolerance, adhesion properties and anti-pathogenic effects of three potential probiotic strains. International Journal of Probiotics and Prebiotics, 2 (4). pp. 185-194. ISSN 1555-1431 (Unpublished)

Inness, V.L., McCartney, A.L., Khoo, C., Gross, K.L. and Gibson, G.R. (2007) Molecular characterisation of the gut microflora of healthy and inflammatory bowel disease cats using fluorescence in situ hybridisation with special reference to Desulfovibrio spp. Journal of Animal Physiology and Animal Nutrition, 91 (1-2). pp. 48-53. ISSN 0931-2439 doi: https://doi.org/10.1111/j.1439-0396.2006.00640.x

Karatzas, K. A. G., Webber, M. A., Jorgensen, F., Woodward, M. J., Piddock, L. J. V. and Humphrey, T. J. (2007) Prolonged treatment of Salmonella enterica serovar Typhimurium with commercial disinfectants selects for multiple antibiotic resistance, increased efflux and reduced invasiveness. Journal of Antimicrobial Chemotherapy, 60 (5). pp. 947-955. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkm314

Karatzas, K.-A., Zervos, A., Tassou, C. C., Mallidis, C. G. and Humphrey, T. J. (2007) Piezotolerant small-colony variants with increased thermotolerance, antibiotic susceptibility, and low invasiveness in a clonal Staphylococcus aureus population. Applied and Environmental Microbiology, 73 (6). pp. 1873-1881. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.01801-06

Parracho, H., McCartney, A.L. and Gibson, G.R. (2007) Probiotics and prebiotics in infant nutrition. Proceedings of the Nutrition Society, 66 (3). pp. 405-411. ISSN 0029-6651 doi: https://doi.org/10.1017/S0029665107005678

Pleydell, E. J., Brown, P. E., Woodward, M. J., Davies, R. H. and French, N. P. (2007) Sources of variation in the ampicillin-resistant Escherichia coli concentration in the feces of organic broiler chickens. Applied and Environmental Microbiology, 73 (1). pp. 203-210. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.01482-06

Randall, L. P., Cooles, S. W., Coldham, N. G., Penuela, E. G., Mott, A. C., Woodward, M. J., Piddock, L. J. V. and Webber, M. A. (2007) Commonly used farm disinfectants can select for mutant Salmonella enterica serovar Typhimurium with decreased susceptibility to biocides and antibiotics without compromising virulence. Journal of Antimicrobial Chemotherapy, 60 (6). pp. 1273-1280. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkm359

Sanders, M.E., Hamilton, J., Reid, G. and Gibson, G. R. (2007) A nonviable preparation of Lactobacillus acidophilus is not a probiotic. Clinical Infectious Diseases, 44 (6). p. 886. ISSN 1537-6591 doi: https://doi.org/10.1086/513887

Skordi, E., Yap, I. K.S., Claus, S. P., Martin, F.-P. J., Cloarec, O., Lindberg, J., Schuppe-Koistinen, I., Holmes, E. and Nicholson, J. K. (2007) Analysis of time-related metabolic fluctuations induced by ethionine in the rat. Journal of Proteome Research, 6 (12). pp. 4572-4581. ISSN 1535-3893 doi: https://doi.org/10.1021/pr070268q

Torres, A. G., Milflores-Flores, L., Garcia-Gallegos, J. G., Patel, S. D., Best, A., La Ragione, R. M., Martinez-Laguna, Y. and Woodward, M. J. (2007) Environmental regulation and colonization attributes of the long polar fimbriae (LPF) of Escherichia coli O157:H7. International Journal of Medical Microbiology, 297 (3). pp. 177-185. ISSN 1438-4221 doi: https://doi.org/10.1016/j.ijmm.2007.01.005

Tuohy, K.M., Pinart-Gilberga, M., Jones, M., Hoyles, L., McCartney, A.L. and Gibson, G.R. (2007) Survivability of a probiotic Lactobacillus casei in the gastrointestinal tract of healthy human volunteers and its impact on the faecal microflora. Journal of Applied Microbiology, 102 (4). pp. 1026-1032. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2006.03154.x

2006

Anjum, M. F., Tucker, J. D., Sprigings, K. A., Woodward, M. J. and Ehricht, R. (2006) Use of miniaturized protein arrays for Escherichia coli O serotyping. Clinical and Vaccine Immunology, 13 (5). pp. 561-567. ISSN 1556-679X doi: https://doi.org/10.1128/cvi.13.5.561-567.2006

Best, A., La Ragione, R. M., Clifford, D., Cooley, W. A., Sayers, A. R. and Woodward, M. J. (2006) A comparison of Shiga-toxin negative Escherichia coli O157 aflagellate and intimin deficient mutants in porcine in vitro and in vivo models of infection. Veterinary Microbiology, 113 (1-2). pp. 63-72. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2005.10.033

Buckley, A. M., Webber, M. A., Cooles, S., Randall, L. P., La Ragione, R. M., Woodward, M. J. and Piddock, L. J. V. (2006) The AcrAB-TolC efflux system of Salmonella enterica serovar Typhimurium plays a role in pathogenesis. Cellular Microbiology, 8 (5). pp. 847-856. ISSN 1462-5814 doi: https://doi.org/10.1111/j.1462-5822.2005.00671.x

Coldham, N. G., Randall, L. P., Piddock, L. J. V. and Woodward, M. J. (2006) Effect of fluoroquinolone exposure on the proteome of Salmonella enterica serovar Typhimurium. Journal of Antimicrobial Chemotherapy, 58 (6). pp. 1145-1153. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkl413

Hudspith, B.N., Rouzard, G., Gibson, G. R., Rayment, N., Petrovska, L., Bruce, K., Sanderson, J.D. and Brostoff, J. (2006) Probiotic bacteria inhibit epithelial cell IL-8 production: role of toll-like receptor engagement. Gut, 55 (Suppl 2). a38-a38. ISSN 1468-3288 (British Society of Gastroenterology Annual Meeting, Birmingham, 20 to 23 March, 2006)

Kolida, S., Saulnier, D.M. and Gibson, G. (2006) Gastrointestinal microflora: probiotics. In: Advances in Applied Microbiology. Advances in Applied Microbiology, 59. Elsevier Academic Press Inc, San Diego, pp. 187-219. ISBN 9780123747884 doi: https://doi.org/10.1016/s0065-2164(06)59007-0

La Ragione, R. M., Best, A., Clifford, D., Weyer, U., Johnson, L., Marshall, R. N., Marshall, J., Cooley, W. A., Farrelly, S., Pearson, G. R. and Woodward, M. J. (2006) Influence of colostrum deprivation and concurrent Cryptosporidium parvum infection on the colonization and persistence of Escherichia coli O157:H7 in young lambs. Journal of Medical Microbiology, 55 (7). pp. 819-828. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.46469-0

La Ragione, R. M., Patel, S., Maddison, B., Woodward, M. J., Best, A., Whitelam, G. C. and Gough, K. C. (2006) Recombinant anti-EspA antibodies block Escherichia coli O157:H7-induced attaching and effacing lesions in vitro. Microbes and Infection, 8 (2). pp. 426-433. ISSN 1286-4579 doi: https://doi.org/10.1016/j.micinf.2005.07.009

McCartney, A. (2006) Enumeration and identification of mixed probiotic and lactic acid bacteria starter cultures. In: Tamine, A.Y. (ed.) Probiotic Dairy Products. Society of Dairy Technology. Blackwell Publishing, Oxford, pp. 98-119. ISBN 9781405121248 doi: https://doi.org/10.1002/9780470995785.ch5

McCartney, A.L. and Gibson, G.R. (2006) The normal microbiota of the human gastrointestinal tract: history of analysis, succession and dietary influences. In: Ouwehand, A.C. and Vaughan, E.E. (eds.) Gastrointestinal microbiology. Taylor & Francis Group, New York, pp. 51-73. ISBN 9780824726416

Randall, L. P., Cooles, S. W., Coldham, N. C., Stapleton, K. S., Piddock, L. J. V. and Woodward, M. J. (2006) Modification of enrofloxacin treatment regimens for poultry experimentally infected with Salmonella enterica serovar Typhimurium DT104 to minimize selection of resistance. Antimicrobial Agents and Chemotherapy, 50 (12). pp. 4030-4037. ISSN 1098-6596 doi: https://doi.org/10.1128/aac.00525-06

Tuohy, K.M. and McCartney, A.L. (2006) Molecular microbial ecology of the human gut. In: Gibson, G.R. and Rastall, R.A. (eds.) Prebiotics: development and application. John Wiley & Sons Ltd, Chichester, pp. 135-155. ISBN 9780470023136

Vlisidou, I., Dziva, F., La Ragione, R. M., Best, A., Garmendia, J., Hawes, P., Monaghan, P., Cawthraw, S. A., Frankel, G., Woodward, M. J. and Stevens, M. P. (2006) Role of intimin-Tir interactions and the Tir-cytoskeleton coupling protein in the colonization of calves and lambs by Escherichia coli O157:H7. Infection and Immunity, 74 (1). pp. 758-764. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.74.1.758-764.2006

Webber, M., Buckley, A. M., Randall, L. P., Woodward, M. J. and Piddock, L. J. V. (2006) Overexpression of marA, soxS and acrB in veterinary isolates of Salmonella enterica rarely correlates with cyclohexane tolerance. Journal of Antimicrobial Chemotherapy, 57 (4). pp. 673-679. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkl025

2005

Anjum, M. F., Marooney, C., Fookes, M., Baker, S., Dougan, G., Ivens, A. and Woodward, M. J. (2005) Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray. Infection and Immunity, 73 (12). pp. 7894-7905. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.73.12.7894-7905.2005

Barbosa, T. M., Serra, C. R., La Ragione, R. M., Woodward, M. J. and Henriques, A. O. (2005) Screening for Bacillus isolates in the broiler gastrointestinal tract. Applied and Environmental Microbiology, 71 (2). pp. 968-978. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.71.2.968-978.2005

Best, A., La Ragione, R. M., Sayers, A. R. and Woodward, M. J. (2005) Role for flagella but not intimin in the persistent infection of the gastrointestinal tissues of specific-pathogen-free chicks by Shiga toxin-negative Escherichia coli O157:H7. Infection and Immunity, 73 (3). pp. 1836-1846. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.73.3.1836-1846.2005

Dahan, S., Wiles, S., La Ragione, R. M., Best, A., Woodward, M. J., Stevens, M. P., Shaw, R. K., Chong, Y., Knutton, S., Phillips, A. and Frankel, G. (2005) EspJ is a prophage-carried type III effector protein of attaching and effacing pathogens that modulates infection dynamics. Infection and Immunity, 73 (2). pp. 679-686. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.73.2.679-686.2005

Delsol, A. A., Randall, L., Cooles, S., Woodward, M. J., Sunderland, J. and Roe, J. M. (2005) Effect of the growth promoter avilamycin on emergence and persistence of antimicrobial resistance in enteric bacteria in the pig. Journal of Applied Microbiology, 98 (3). pp. 564-571. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2004.02461.x

Edwards, A. M., Jenkinson, H. F., Woodward, M. J. and Dymock, D. (2005) Binding properties and adhesion-mediating regions of the major sheath protein of Treponema denticola ATCC 35405. Infection and Immunity, 73 (5). pp. 2891-2898. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.73.5.2891-2898.2005

Gibson, G.R., McCartney, A.L. and Rastall, R.A. (2005) Prebiotics and resistance to gastrointestinal infections. British Journal of Nutrition, 93 (S1). S31-S34. ISSN 0007-1145 doi: https://doi.org/10.1079/bjn20041343

Howells, L. C., Whelan, A. O., Woodward, M. J. and Coldham, N. G. (2005) Simple and effective technical procedures for the packing and application of nanospray PicoFrit HPLC columns for proteomic analyses. Proteomics, 5 (15). pp. 3864-3867. ISSN 1615-9853 doi: https://doi.org/10.1002/pmic.200401259

Karatzas, K. A. G., Valdramidis, V. P. and Wells-Bennik, M. H. J. (2005) Contingency locus in ctsR of Listeria monocytogenes Scott A: a strategy for occurrence of abundant piezotolerant isolates within clonal populations. Applied and Environmental Microbiology, 71 (12). pp. 8390-8396. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.71.12.8390-8396.2005

La Ragione, R. M., Ahmed, N. M. Y., Best, A., Clifford, D., Weyer, U. and Woodward, M. J. (2005) Failure to detect transmission of Escherichia coli O157:H7 from orally dosed nannies to sucking kids at foot. Veterinary Record, 157 (21). pp. 659-661. ISSN 0042-4900

La Ragione, R. M., Ahmed, N. M. Y., Best, A., Clifford, D., Weyer, U., Cooley, W. A., Johnson, L., Pearson, G. R. and Woodward, M. J. (2005) Colonization of 8-week-old conventionally reared goats by Escherichia coli O157:H7 after oral inoculation. Journal of Medical Microbiology, 54 (5). pp. 485-492. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.45897-0

La Ragione, R. M., Best, A., Sprigings, K., Liebana, E., Woodward, G. R., Sayers, A. R. and Woodward, M. J. (2005) Variable and strain dependent colonisation of chickens by Escherichia coli O157. Veterinary Microbiology, 107 (1-2). pp. 103-113. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2005.01.005

Marches, O., Wiles, S., Dziva, F., La Ragione, R. M., Schuller, S., Best, A., Phillips, A. D., Hartland, E. L., Woodward, M. J., Stevens, M. P. and Frankel, G. (2005) Characterization of two non-locus of enterocyte effacement-encoded type III-translocated effectors, NleC and NleD, in attaching and effacing pathogens. Infection and Immunity, 73 (12). pp. 8411-8417. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.73.12.8411-8417.2005

Moore, L. J., Woodward, M. J. and Grogono-Thomas, R. (2005) The occurrence of treponemes in contagious ovine digital dermatitis and the characterisation of associated Dichelobacter nodosus. Veterinary Microbiology, 111 (3-4). pp. 199-209. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2005.10.016

O'Grady, B. and Gibson, G. R. (2005) Microbiata of the human gut. In: Tamine, A. (ed.) Probiotic Dairy Products. Blackwell Publishing, Oxford, pp. 1-15. ISBN 9781405121248

Parracho, H.M.R.T., Bingham, M.O., Gibson, G.R. and McCartney, A.L. (2005) Differences between the gut microflora of children with autistic spectrum disorders and that of healthy children. Journal of Medical Microbiology, 54 (10). pp. 987-991. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.46101-0

Pumbwe, L., Randall, L. P., Woodward, M. J. and Piddock, L. J. V. (2005) Evidence for multiple-antibiotic resistance in Campylobacter jejuni not mediated by CmeB or CmeF. Antimicrobial Agents and Chemotherapy, 49 (4). pp. 1289-1293. ISSN 1098-6596 doi: https://doi.org/10.1128/aac.49.4.1289-1293.2005

Randall, L. P., Clouting, C. S., Gradel, K. O., Clifton-Hadley, F. A., Davies, R. D. and Woodward, M. J. (2005) Farm disinfectants select for cyclohexane resistance, a marker of multiple antibiotic resistance, in Escherichia coli. Journal of Applied Microbiology, 98 (3). pp. 556-563. ISSN 1364-5072 doi: https://doi.org/10.1111/j.1365-2672.2004.02488.x

Randall, L. P., Coldham, N. G. and Woodward, M. J. (2005) Detection of mutations in Salmonella enterica gyrA, gyrB, parC and parE genes by denaturing high performance liquid chromatography (DHPLC) using standard HPLC instrumentation. Journal of Antimicrobial Chemotherapy, 56 (4). pp. 619-623. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dki293

Randall, L. P., Eaves, D. J., Cooles, S. W., Ricci, V., Buckley, A., Woodward, M. J. and Piddock, L. J. V. (2005) Fluoroquinolone treatment of experimental Salmonella enterica serovar Typhimurium DT104 infections in chickens selects for both gyrA mutations and changes in efflux pump gene expression. Journal of Antimicrobial Chemotherapy, 56 (2). pp. 297-306. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dki189

Roger, L. C. and McCartney, A. (2005) Prebiotics and the infant microflora. In: Tannock, G. W. (ed.) Probiotics and prebiotics: scientific aspects. Caister Academic Press, Wymondham, pp. 195-216. ISBN 1904455018

Wales, A. D., Pearson, G. R., Best, A., Cookson, A. L., La Ragione, R. M., Roe, J. M., Hayes, C. M. and Woodward, M. J. (2005) Naturally acquired attaching and effacing Escherichia coli in sheep. Research in Veterinary Science, 78 (2). pp. 109-115. ISSN 0034-5288 doi: https://doi.org/10.1016/j.rvsc.2004.07.002

Wales, A. D., Pearson, G. R., Roe, J. M., Hayes, C. M., La Ragione, R. M. and Woodward, M. J. (2005) Attaching-effacing lesions associated with Escherichia coli O157:H7 and other bacteria in experimentally infected conventional neonatal goats. Journal of Comparative Pathology, 132 (2-3). pp. 185-194. ISSN 0021-9975 doi: https://doi.org/10.1016/j.jcpa.2004.09.010

Wales, A. D., Woodward, M. J. and Pearson, G. R. (2005) Attaching-effacing bacteria in animals. Journal of Comparative Pathology, 132 (1). pp. 1-26. ISSN 0021-9975 doi: https://doi.org/10.1016/j.jcpa.2004.09.005

2004

Aktan, I., Sprigings, K. A., La Ragione, R. M., Faulkner, L. M., Paiba, G. A. and Woodward, M. J. (2004) Characterisation of attaching-effacing Escherichia coli isolated from animals at slaughter in England and Wales. Veterinary Microbiology, 102 (1-2). pp. 43-53. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2004.04.013

Barlow, A. M., Wales, A. D., Burch, A. A., La Ragione, R. M., Woodward, M. J. and Pearson, G. R. (2004) Attaching and effacing lesions in the intestines of an adult goat associated with natural infection with Escherichia coli O145. Veterinary Record, 155 (25). pp. 807-808. ISSN 0042-4900

Carroll, P., La Ragione, R. M., Sayers, A. R. and Woodward, M. J. (2004) The O-antigen of Salmonella enterica serotype Enteritidis PT4: a significant factor in gastrointestinal colonisation of young but not newly hatched chicks. Veterinary Microbiology, 102 (1-2). pp. 73-85. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2004.05.003

Cassar, C. A., Ottaway, M., Paiba, G. A., Futter, R., Newbould, S. and Woodward, M. J. (2004) Absence of enteroaggregative Escherichia coli in farmed animals in Great Britain. Veterinary Record, 154 (8). pp. 237-239. ISSN 0042-4900

Cogan, T. A., Jorgensen, F., Lappin-Scott, H. M., Benson, C. E., Woodward, M. J. and Humphrey, T. J. (2004) Flagella and curli fimbriae are important for the growth of Salmonella enterica serovars in hen eggs. Microbiology, 150 (4). pp. 1063-1071. ISSN 1465-2080 doi: https://doi.org/10.1099/mic.0.26791-0

Coldham, N. G. and Woodward, M. J. (2004) Characterization of the Salmonella typhimurium proteome by semi-automated two dimensional HPLC-mass spectrometry: detection of proteins implicated in multiple antibiotic resistance. Journal of Proteome Research, 3 (3). pp. 595-603. ISSN 1535-3893 doi: https://doi.org/10.1021/pr034129u

Delsol, A. A., Sunderland, J., Woodward, M. J., Pumbwe, L., Piddock, L. J. V. and Roe, J. M. (2004) Emergence of fluoroquinolone resistance in the native Campylobacter coli population of pigs exposed to enrofloxacin. Journal of Antimicrobial Chemotherapy, 53 (5). pp. 872-874. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkh150

Delsol, A. A., Woodward, M. J. and Roe, J. M. (2004) Comment on 'Effect of a 5 day enrofloxacin treatment on Salmonella enterica serotype Typhimurium DT104 in the pig': reply. Journal of Antimicrobial Chemotherapy, 54 (3). pp. 693-694. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkh400

Delsol, A. A., Woodward, M. J. and Roe, J. M. (2004) Effect of a 5 day enrofloxacin treatment on Salmonella enterica serotype Typhimurium DT104 in the pig. Journal of Antimicrobial Chemotherapy, 53 (2). pp. 396-398. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkh038

Drakoularakou, A., McCartney, A., Rastall, R. and Gibson, G.R. (2004) Established and emerging prebiotics and their effects on the gut microflora. Agro Food Industry Hi-Tech, 15 (5). pp. 18-20. ISSN 1722-6996

Eaves, D. J., Randall, L., Gray, D. T., Buckley, A., Woodward, M. J., White, A. P. and Piddock, L. J. V. (2004) Prevalence of mutations within the quinolone resistance-determining region of gyrA, gyrB, parC, and parE and association with antibiotic resistance in quinolone-resistant Salmonella enterica. Antimicrobial Agents and Chemotherapy, 48 (10). pp. 4012-4015. ISSN 1098-6596 doi: https://doi.org/10.1128/aac.48.10.4012-4015.2004

Hoyles, L., Collins, M.D., Falsenz, E., Nikolaitchouk, N. and McCartney, A.L. (2004) Transfer of members of the genus Falcivibrio to the genus Mobiluncus, and emended description of the genus Mobiluncus. Systematic and Applied Microbiology, 27 (1). pp. 72-83. ISSN 0723-2020 doi: https://doi.org/10.1078/0723-2020-00260

Humphreys, S., Rowley, G., Stevenson, A., Anjum, M. F., Woodward, M. J., Gilbert, S., Kormanec, J. and Roberts, M. (2004) Role of the two-component regulator CpxAR in the virulence of Salmonella entetica serotype typhimurium. Infection and Immunity, 72 (8). pp. 4654-4661. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.72.8.4654-4661.2004

Kuhne, S. A., Hawes, W. S., La Ragione, R. M., Woodward, M. J., Whitelam, G. C. and Gough, K. C. (2004) Isolation of recombinant antibodies against EspA and intimin of Escherichia coli O157:H7. Journal of Clinical Microbiology, 42 (7). pp. 2966-2976. ISSN 0095-1137 doi: https://doi.org/10.1128/jcm.42.7.2966-2976.2004

La Ragione, R. M., Best, A., Sprigings, K. A., Cooley, W. A., Jepson, M. A. and Woodward, M. J. (2004) Interaction between attaching and effacing Escherichia coli serotypes O157:H7 and O26:K60 in cell culture. Veterinary Microbiology, 104 (1-2). pp. 119-124. ISSN 0378-1135 doi: https://doi.org/10.1016/j.vetmic.2004.08.002

La Ragione, R. M., Narbad, A., Gasson, M. J. and Woodward, M. J. (2004) In vivo characterization of Lactobacillus johnsonii FI9785 for use as a defined competitive exclusion agent against bacterial pathogens in poultry. Letters in Applied Microbiology, 38 (3). pp. 197-205. ISSN 0266-8254 doi: https://doi.org/10.1111/j.1472-765X.2004.01474.x

Manning, T. and Gibson, G. R. (2004) Prebiotics and lactic acid bacteria. In: Salminen, S. (ed.) Lactic Acid Bacteria. Marcel Dekker, New York.

Pumbwe, L., Randall, L. P., Woodward, M. J. and Piddock, L. J. V. (2004) Expression of the efflux pump genes cmeB, cmeF and the porin gene porA in multiple-antibiotic-resistant Campylobacter jejuni. Journal of Antimicrobial Chemotherapy, 54 (2). pp. 341-347. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkh331

Randall, L. P., Cooles, S. W., Osborn, M. K., Piddock, L. J. V. and Woodward, M. J. (2004) Antibiotic resistance genes, integrons and multiple antibiotic resistance in thirty-five serotypes of Salmonella enterica isolated from humans and animals in the UK. Journal of Antimicrobial Chemotherapy, 53 (2). pp. 208-216. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkh070

Randall, L. P., Cooles, S. W., Piddock, L. J. V. and Woodward, M. J. (2004) Effect of triclosan or a phenolic farm disinfectant on the selection of antibiotic-resistant Salmonella enterica. Journal of Antimicrobial Chemotherapy, 54 (3). pp. 621-627. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkh376

Randall, L. P., Cooles, S. W., Piddock, L. J. V. and Woodward, M. J. (2004) Mutant prevention concentrations of ciprofloxacin and enrofloxacin for Salmonella enterica. Journal of Antimicrobial Chemotherapy, 54 (3). pp. 688-691. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkh360

Roe, A. J., Naylor, S. W., Spears, K. J., Yull, H. M., Dransfield, T. A., Oxford, M., McKendrick, I. J., Porter, M., Woodward, M. J., Smith, D. G. E. and Gally, D. L. (2004) Co-ordinate single-cell expression of LEE4- and LEE5-encoded proteins of Escherichia coli O157:H7. Molecular Microbiology, 54 (2). pp. 337-352. ISSN 0950-382X doi: https://doi.org/10.1111/j.1365-2958.2004.04277.x

Rouzard, G.C.M. and Gibson, G. R. (2004) Probiotics, prebiotics and synbiotics: functional ingredients for microbial management strategies. In: Biliarderis , C.G. and Izydorczyk, M. (eds.) Functional Food Carbohydrates. Functional Foods and Nutraceuticals. CRC Press, London, pp. 479-510. ISBN 9780849318221

Salminen, S., Gibson, G., McCartney, A. and Isolauri, E. (2004) Influence of mode of delivery on gut microbiota composition in seven year old children. Gut, 53 (9). pp. 1388-1389. ISSN 1468-3288 doi: https://doi.org/10.1136/gut.2004.041640

Stevens, M. P., Roe, A. J., Vlisidou, I., van Diemen, P. M., La Ragione, R. M., Best, A., Woodward, M. J., Gally, D. L. and Wallis, T. S. (2004) Mutation of toxB and a truncated version of the efa-1 gene in Escherichia coli O157 : H7 influences the expression and secretion of locus of enterocyte effacement-encoded proteins but not intestinal colonization in calves or sheep. Infection and Immunity, 72 (9). pp. 5402-5411. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.72.9.5402-5411.2004

Thomson, N., Baker, S., Pickard, D., Fookes, M., Anjum, M., Hamlin, N., Wain, J., House, D., Bhutta, Z., Chan, K., Falkow, S., Parkhill, J., Woodward, M. J., Ivens, A. and Dougan, G. (2004) The role of prophage-like elements in the diversity of Salmonella enterica serovars. Journal of Molecular Biology, 339 (2). pp. 279-300. ISSN 0022-2836 doi: https://doi.org/10.1016/j.jmb.2004.03.058

Vulevic, J., McCartney, A.L., Gee, J.M., Johnson, I.T. and Gibson, G.R. (2004) Microbial species involved in production of 1,2-sn-diacylglycerol and effects of phosphatidylcholine on human fecal microbiota. Applied and Environmental Microbiology, 70 (9). pp. 5659-5666. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.70.9.5659-5666.2004

Wynne, A.G., McCartney, A.L., Brostoff, J., Hudspith, B.N. and Gibson, G.R. (2004) An in vitro assessment of the effects of broad-spectrum antibiotics on the human gut microflora and concomitant isolation of a Lactobacillus plantarum with anti-Candida activities. Anaerobe, 10 (3). pp. 165-169. ISSN 1075-9964 doi: https://doi.org/10.1016/j.anaerobe.2004.03.002

2003

Abdallah, A. I., Commander, N. J., Woodward, M. J., Spencer, S., Hart, C. A. and Winstanley, C. (2003) Type III secretion homologs are present in Brucella melitensis, B-ovis, and B-suis biovars 1, 2, and 3. Current Microbiology, 46 (4). pp. 241-245. ISSN 0343-8651 doi: https://doi.org/10.1007/s00284-002-3789-3

Anjum, M. F., Lucchini, S., Thompson, A., Hinton, J. C. D. and Woodward, M. J. (2003) Comparative genomic indexing reveals the phylogenomics of Escherichia coli pathogens. Infection and Immunity, 71 (8). pp. 4674-4683. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.71.8.4674-4683.2003

Best, A., La Ragione, R. M., Cooley, W. A., O'Connor, C. D., Velge, P. and Woodward, M. J. (2003) Interaction with avian cells and colonisation of specific pathogen free chicks by Shiga-toxin negative Escherichia coli O157:H7 (NCTC 12900). Veterinary Microbiology, 93 (3). pp. 207-222. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(03)00031-2

Burriel, A. R., Dalley, C. and Woodward, M. J. (2003) Prevalence of Leptospira species among farmed and domestic animals in Greece. Veterinary Record, 153 (5). pp. 146-148. ISSN 0042-4900 doi: https://doi.org/10.1136/vr.153.5.146

Cookson, A. L. and Woodward, M. J. (2003) The role of intimin in the adherence of enterohaemorrhagic Escherichia coli (EHEC) O157:H7 to HEp-2 tissue culture cells and to bovine gut explant tissues. International Journal of Medical Microbiology, 292 (7-8). pp. 547-553. ISSN 1438-4221 doi: https://doi.org/10.1078/1438-4221-00235

D'Altero, G. L., Bazeley, K. J., Pearson, G. R., Jones, J. R., Jose, M. and Woodward, M. J. (2003) Meningitis associated with Salmonella Newport in a neonatal alpaca (Lama pacos) in the United Kingdom. Veterinary Record, 152 (2). pp. 56-57. ISSN 0042-4900

Delsol, A. A., Anjum, M., Woodward, M. J., Sunderland, J. and Roe, J. M. (2003) The effect of chlortetracycline treatment and its subsequent withdrawal on multi-resistant Salmonella enterica serovar Typhimurium DT104 and commensal Escherichia coli in the pig. Journal of Applied Microbiology, 95 (6). pp. 1226-1234. ISSN 1364-5072 doi: https://doi.org/10.1046/j.1365-2672.2003.02088.x

Edwards, A. M., Dymock, D., Woodward, M. J. and Jenkinson, H. F. (2003) Genetic relatedness and phenotypic characteristics of Treponema associated with human periodontal tissues and ruminant foot disease. Microbiology, 149. pp. 1083-1093. ISSN 1465-2080 doi: https://doi.org/10.1099/mic.0.26111-0

Gibson, G. and Rastall, B. (2003) Gastrointestinal pathogenesis and the protective role of probiotics and prebiotics. Food Science and Technology Bulletin: Functional Foods, 1 (2). pp. 1-17. ISSN 1476-2137

Gibson, G. R. (2003) Probiotics and prebiotics for improved gut health. In: Carr, T. and Descheemaeker, K. (eds.) Nutrition and Health: Current Topics. Garant, Antwerp, Belgium, pp. 131-134. ISBN 904411493X

Gibson, G. R., Rastall, R. A. and Fuller, R. (2003) Health benefits of probiotics and prebiotics. In: Fuller, R. and Perdigon, G. (eds.) Gut flora, nutrition, immunity and health. Blackwell Publishing, Oxford, pp. 52-76. ISBN 9781405100007

Grant, A. J., Farris, M., Alefounder, P., Williams, P. H., Woodward, M. J. and O'Connor, C. D. (2003) Co-ordination of pathogenicity island expression by the BipA GTPase in enteropathogenic Escherichia coli (EPEC). Molecular Microbiology, 48 (2). pp. 507-521. ISSN 0950-382X doi: https://doi.org/10.1046/j.1365-2958.2003.t01-1-03447.x

Hamilton-Miller, J.M., Gibson, G. R. and Bruck, W.M. (2003) Some insights into the derivation and early uses of the word ‘probiotic'. British Journal of Nutrition, 90 (4). p. 845. ISSN 0007-1145 doi: https://doi.org/10.1079/BJN2003954

Karatzas, K.-A., Wouters, J. A., Gahan, C. G. M. , Hill, C. , Tjakko, A. and Bennik, M. H. J. (2003) The CtsR regulator of Listeria monocytogenes contains a variant glycine repeat region that affects piezotolerance, stress resistance, motility and virulence. Molecular Microbiology, 49 (5). pp. 1227-1238. ISSN 0950-382X doi: https://doi.org/10.1046/j.1365-2958.2003.03636.x

La Ragione, R. M. and Woodward, M. J. (2003) Competitive exclusion by Bacillus subtilis spores of Salmonella enterica serotype Enteritidis and Clostridium perfringens in young chickens. Veterinary Microbiology, 94 (3). pp. 245-256. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(03)00077-4

La Ragione, R. M., Cooley, W. A., Velge, P., Jepson, M. A. and Woodward, M. J. (2003) Membrane ruffling and invasion of human and avian cell lines is reduced for aflagellate mutants of Salmonella enterica serotype Enteritidis. International Journal of Medical Microbiology, 293 (4). pp. 261-272. ISSN 1438-4221 doi: https://doi.org/10.1078/1438-4221-00263

McCartney, A.L. (2003) Bifidobacteria In foods. In: Caballero, B., Trugo, L. and Finglas, P.M. (eds.) Encyclopedia of food sciences and nutrition. Academic Press, London, pp. 463-470. ISBN 9780122270550

Mueller-Harvey, I. (2003) Review of modern analytical techniques in feed analysis. In: Assessing Quality and Safety of Animal Feeds. FAO Animal Production and Health Papers (160). FAO, pp. 1-39. ISBN 9789251050460

Pereira, D.I.A., McCartney, A.L. and Gibson, G.R. (2003) An in vitro study of the probiotic potential of a bile-salt-hydrolyzing Lactobacillus fermentum strain, and determination of its cholesterol-lowering properties. Applied and Environmental Microbiology, 69 (8). pp. 4743-4752. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.69.8.4743-4752.2003

Randall, L. P., Ridley, A. M., Cooles, S. W., Sharma, M., Sayers, A. R., Pumbwe, L., Newell, D. G., Piddock, L. J. V. and Woodward, M. J. (2003) Prevalence of multiple antibiotic resistance in 443 Campylobacter spp. isolated from humans and animals. Journal of Antimicrobial Chemotherapy, 52 (3). pp. 507-510. ISSN 0305-7453 doi: https://doi.org/10.1093/jac/dkg379

Robertson, J. M. C., McKenzie, N. H., Duncan, M., Allen-Vercoe, E., Woodward, M. J., Flint, H. J. and Grant, G. (2003) Lack of flagella disadvantages Salmonella enterica serovar Enteritidis during the early stages of infection in the rat. Journal of Medical Microbiology, 52 (1). pp. 91-99. ISSN 0022-2615 doi: https://doi.org/10.1099/jmm.0.04901-0

Roe, A. J., Yull, H., Naylor, S. W., Woodward, M. J., Smith, D. G. E. and Gally, D. L. (2003) Heterogeneous surface expression of EspA translocon filaments by Escherichia coli O157:H7 is controlled at the posttranscriptional level. Infection and Immunity, 71 (10). pp. 5900-5909. ISSN 0019-9567 doi: https://doi.org/10.1128/iai.71.10.5900-5909.2003

Smejkal, C., Kolida, S., Bingham, M., Gibson, G. and McCartney, A. (2003) Probiotics and prebiotics in female health. Menopause International, 9 (2). pp. 69-74. ISSN 1754-0453 doi: https://doi.org/10.1258/136218003100322224

Woodward, M. J., Best, A., Sprigings, K. A., Pearson, G. R., Skuse, A. M., Wales, A., Hayes, C. M., Roe, J. M., Low, J. C. and La Ragione, R. M. (2003) Non-toxigenic Escherichia coli O157:H7 strain NCTC12900 causes attaching-effacing lesions and eae-dependent persistence in weaned sheep. International Journal of Medical Microbiology, 293 (4). pp. 299-308. ISSN 1438-4221 doi: https://doi.org/10.1078/1438-4221-00264

2002

Avery, S. M., Liebana, E., Reid, C. A., Woodward, M. J. and Buncic, S. (2002) Combined use of two genetic fingerprinting methods, pulsed-field gel electrophoresis and ribotyping, for characterization of Escherichia coli O157 isolates from food animals, retail meats, and cases of human disease. Journal of Clinical Microbiology, 40 (8). pp. 2806-2812. ISSN 0095-1137 doi: https://doi.org/10.1128/jcm.40.8.2806-2812.2002

Bingham, M. and Gibson, G. (2002) A gut feeling about autism. The Autism File, 10. pp. 25-28.

Bonnet, R., Suau, A., Dore, J., Gibson, G. R. and Collins, M.D. (2002) Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs. International Journal of Systematic and Evolutionary Microbiology, 52. pp. 757-763. ISSN 1466-5034 doi: https://doi.org/10.1099/ijs.0.01755-0

Brück, W.M., Graverholt, G. and Gibson, G. (2002) Use of batch culture and a two-stage continuous culture system to study the effect of supplemental a-lactalbumin and glycomacropeptide on mixed populations of human gut bacteria. FEMS Microbiology Ecology, 41 (3). pp. 231-237. ISSN 1574-6941 doi: https://doi.org/10.1016/S0168-6496(02)00296-9

Brück, W.M., Kelleher, S.L., Lönnerdal, B., Nielsen, K.E., Chatterton, D. and Gibson, G. (2002) Fermentation studies on selected infant milk components using in vitro models of the human gut and rhesus monkeys. Journal of Paediatric Research, 37. pp. 273-280.

Clifton-Hadley, F. A., Breslin, M., Venables, L. M., Sprigings, K. A., Cooles, S. W., Houghton, S. and Woodward, M. J. (2002) A laboratory study of an inactivated bivalent iron restricted Salmonella enterica serovars Enteritidis and Typhimurium dual vaccine against Typhimurium challenge in chickens. Veterinary Microbiology, 89 (2-3). pp. 167-179. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(02)00169-4

Collins, M. D., Hoyles, L., Foster, G., Falsen, E. and Weiss, N. (2002) Arthrobacter nasiphocae sp. nov., from the common seal (Phoca vitulina). International Journal of Systematic and Evolutionary Microbiology, 52 (2). pp. 569-571. ISSN 1466-5034

Cookson, A. L., Cooley, W. A. and Woodward, M. J. (2002) The role of type 1 and curli fimbriae of Shiga toxin-producing Escherichia coli in adherence to abiotic surfaces. International Journal of Medical Microbiology, 292 (3-4). pp. 195-205. ISSN 1438-4221 doi: https://doi.org/10.1078/1438-4221-00203

Cookson, A. L., Hayes, C. M., Pearson, G. R., Roe, J. M., Wales, A. D. and Woodward, M. J. (2002) Isolation from a sheep of an attaching and effacing Escherichia coli O115:H- with a novel combination of virulence factors. Journal of Medical Microbiology, 51 (12). pp. 1041-1049. ISSN 0022-2615

Cookson, A. L., Wales, A. D., Roe, J. M., Hayes, C. M., Pearson, G. R. and Woodward, M. J. (2002) Variation in the persistence of Escherichia coli O157:H7 in experimentally inoculated 6-week-old conventional lambs. Journal of Medical Microbiology, 51 (12). pp. 1032-1040. ISSN 0022-2615

Eaves, D. J., Liebana, E., Woodward, M. J. and Piddock, L. J. V. (2002) Detection of gyrA mutations in quinolone-resistant Salmonella enterica by denaturing high-performance liquid chromatography. Journal of Clinical Microbiology, 40 (11). pp. 4121-4125. ISSN 0095-1137 doi: https://doi.org/10.1128/jcm.40.11.4121-4125.2002

Fooks, L.J. and Gibson, G. R. (2002) In vitro investigations of the effect of selected probiotics and prebiotics on human intestinal pathogens. FEMS Microbiology Ecology, 39 (1). pp. 67-75. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2002.tb00907.x

Fooks, L.J. and Gibson, G. R. (2002) Probiotics as modulators of the gut flora. British Journal of Nutrition, 88. S39-S49. ISSN 0007-1145 doi: https://doi.org/10.1079/BJN2002628 (supplement 1)

Gibson, G. (2002) Human microbiology: the end of the food chain or the start of good health? SGM Microbiology Today, 29. pp. 4-6.

Gibson, G. (2002) Intestinal flora research for the 21st century. Bioscience Microflora, 20. pp. 131-134.

Gibson, G. (2002) Management of the human gut flora for improved health. In: Carr, T. and Descheemaeker, K. (eds.) Nutrition and Health. Blackwell Science, Oxford, pp. 117-120.

Gibson, G., Rabiu, B., Rycroft, C.E. and Rastall, R.A. (2002) Trans-galactooligosaccharides as prebiotics. In: Shortt, C. and O’Brien, J. (eds.) Handbook of Functional Dairy Products. CRC Press, Boca Raton, pp. 91-108.

Greetham, H. L., Giffard, C., Hutson, R.A., Collins, M.D. and Gibson, G. R. (2002) Bacteriology of the Labrador dog gut: a cultural and genotypic approach. Journal of Applied Microbiology, 93 (4). pp. 640-646. ISSN 1364-5072 doi: https://doi.org/10.1046/j.1365-2672.2002.01724.x

Hoyles, L., Falsen, E., Foster, G. and Collins, M. D. (2002) Actinomyces coleocanis sp. nov., from the vagina of a dog. International Journal of Systematic and Evolutionary Microbiology, 52 (4). pp. 1201-1203. ISSN 1466-5034 doi: https://doi.org/10.1099/ijs.0.01934-0

Hoyles, L., Falsen, E., Foster, G., Rogerson, F. and Collins, M. D. (2002) Arcanobacterium hippocoleae sp. nov., from the vagina of a horse. International Journal of Systematic and Evolutionary Microbiology, 52 (2). pp. 617-619. ISSN 1466-5034

Hoyles, L., Inganäs, E., Falsen, E., Drancourt, M., Weiss, N., McCartney, A. L. and Collins, M. D. (2002) Bifidobacterium scardovii sp. nov., from human sources. International Journal of Systematic and Evolutionary Microbiology, 52 (3). pp. 995-999. ISSN 1466-5034 doi: https://doi.org/10.1099/ijs.0.02065-0

Karatzas, K. A. G. and Bennik, M. H. J. (2002) Characterization of a Listeria monocytogenes Scott A isolate with high tolerance towards high hydrostatic pressure. Applied and Environmental Microbiology, 68 (7). pp. 3183-3189. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.68.7.3183–3189.2002

Kilian, S., Kritzinger, S., Rycroft, C., Gibson, G. and James, d. P. (2002) The effect of the novel bifidogenic trisaccharide, neokestose, on the human colonic microbiota. World Journal of Microbiology and Biotechnology, 18 (7). pp. 637-644. ISSN 0959-3993 doi: https://doi.org/10.1023/A:1016808015630

Kolida, S., Tuohy, K. and Gibson, G. R. (2002) Prebiotic effects of inulin and oligofructose. British Journal of Nutrition, 87. S193-S197. ISSN 0007-1145 doi: https://doi.org/10.1079/BJN/2002537 (supplement S2)

La Ragione, R. M. and Woodward, M. J. (2002) Virulence factors of Escherichia coli serotypes associated with avian colisepticaemia. Research in Veterinary Science, 73 (1). pp. 27-35. ISSN 0034-5288 doi: https://doi.org/10.1016/s0034-5288(02)00075-9

La Ragione, R. M., McLaren, I. M., Foster, G., Cooley, W. A. and Woodward, M. J. (2002) Phenotypic and genotypic characterization of avian Escherichia coli O86:K61 isolates possessing a gamma-like intimin. Applied and Environmental Microbiology, 68 (10). pp. 4932-4942. ISSN 0099-2240 doi: https://doi.org/10.1128/aem.68.10.4932-4942.2002

Mattila-Sandholm, T., Blaut, M., Daly, C., De Vuyst, L., Gibson, G., Goosens, H., Knorr, D., Lucas, J., Lahteenmaki, L., Mercenier, A., Saarela, M., Shanahan, F. and de Vos, W.M. (2002) Food, GI-tract functionality and human health cluster: ProEUHealth. Microbial Ecology in Health and Disease, 14 (2). pp. 65-74. ISSN 1651-2235 doi: https://doi.org/10.1080/08910600260081702

McCartney, A. L. (2002) Application of molecular biological methods for studying probiotics and the gut flora. British Journal of Nutrition, 88. s29-s37. ISSN 1475-2662 doi: https://doi.org/10.1079/BJN2002627

Mountzouris, K. C., McCartney, A. L. and Gibson, G. R. (2002) Intestinal microflora of human infants and current trends for its nutritional modulation. British Journal of Nutrition, 87 (5). pp. 405-420. ISSN 1475-2662 doi: https://doi.org/10.1079/BJN2002563

Olano-Martin, E., Gibson, G. R. and Rastall, R.A. (2002) Comparison of the in vitro bifidogenic properties of pectins and pectic-oligosaccharides. Journal of Applied Microbiology, 93 (3). pp. 505-511. ISSN 1364-5072 doi: https://doi.org/10.1046/j.1365-2672.2002.01719.x

Pereira, D.I. and Gibson, G. R. (2002) Cholesterol assimilation by lactic acid bacteria and bifidobacteria isolated from the human gut. Applied and Environmental Microbiology, 68 (9). pp. 4689-4693. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.68.9.4689-4693.2002

Pereira, D.I. and Gibson, G. R. (2002) Effect of consumption of probiotics and prebiotics on serum lipid levels in humans. Critical Reviews in Biochemistry and Molecular Biology, 37 (4). pp. 259-281. ISSN 1040-9238 doi: https://doi.org/10.1080/10409230290771519

Probert, H.M. and Gibson, G. R. (2002) Investigating the prebiotic and gas-generating effects of selected carbohydrates on the human colonic microflora. Letters in Applied Microbiology, 35 (6). pp. 473-480. ISSN 0266-8254 doi: https://doi.org/10.1046/j.1472-765X.2002.01223.x

Rabiu, B. A. and Gibson, G. R. (2002) Carbohydrates: a limit on bacterial diversity within the colon. Biological Reviews, 77 (3). pp. 443-453. doi: https://doi.org/10.1017/S1464793102005961

Randall, L. P. and Woodward, M. J. (2002) The multiple antibiotic resistance (mar) locus and its significance. Research in Veterinary Science, 72 (2). pp. 87-93. ISSN 0034-5288 doi: https://doi.org/10.1053/rvsc.2001.0537

Rastall, B. and Gibson, G. (2002) Prebiotic oligosaccharides: evaluation of biological activities and potential future developments. In: Tannock, G. W. (ed.) Probiotics and Prebiotics. Caister Academic Press, Wymondham, Norfolk, pp. 107-148. ISBN 9780954246419

Steer, T.E. and Gibson, G. (2002) The microbiology of phytic acid metabolism by gut bacteria and relevance for bowel cancer. International Journal of Food Science and Technology, 37 (7). pp. 783-790. ISSN 1365-2621 doi: https://doi.org/10.1046/j.1365-2621.2002.00616.x

Tuohy, K.M., Ziemer, C.J., Klinder, A., Knobel, Y., Pool-Zobel, B.L. and Gibson, G. R. (2002) A human volunteer study to determine the prebiotic effects of lactulose powder on human colonic microbiota. Microbial Ecology in Health and Disease, 14 (3). pp. 165-173. ISSN 1651-2235 doi: https://doi.org/10.1080/089106002320644357

Wales, A.D., Clifton-Hadley, F.A., Cookson, A.L., Dibb-Fuller, M.P., Laragione, R.M., Pearson, G.R. and Woodward, M.J. (2002) Production of attaching-effacing lesions in ligated large intestine loops of 6-month-old sheep by Escherichia coli O157:H7. Journal of Medical Microbiology, 51 (9). pp. 755-763. ISSN 0022-2615

Wemekamp-Kamphuis, H. H., Karatzas, A. K., Wouters, J. A. and Abee, T. (2002) Enhanced levels of cold shock proteins in Listeria monocytogenes LO28 upon exposure to low temperature and high hydrostatic pressure. Applied and Environmental Microbiology, 68 (2). pp. 456-463. ISSN 0099-2240 doi: https://doi.org/10.1128/​AEM.68.2.456-463.2002

Woodward, M. J., Gettinby, G., Breslin, M. F., Corkish, J. D. and Houghton, S. (2002) The efficacy of Salenvac, a Salmonella enterica subsp. Enterica serotype Enteritidis iron-restricted bacterin vaccine, in laying chickens. Avian Pathology, 31 (4). pp. 383-392. ISSN 0307-9457 doi: https://doi.org/10.1080/03079450220141660

2001

Apostolou, E., Pelto, L., Kirjavainen, P.V., Isolauri, E., Salminen, S.J. and Gibson, G. R. (2001) Differences in the gut bacterial flora of healthy and milk-hypersensitive adults, as measured by fluorescence in situ hybridization. FEMS Immunology and Medical Microbiology, 30 (3). pp. 217-221. ISSN 0928-8244 doi: https://doi.org/10.1016/S0928-8244(01)00222-X

Cogan, T. A., Domingue, G., Lappin-Scott, H. M., Benson, C. E., Woodward, M. J. and Humphrey, T. J. (2001) Growth of Salmonella enteritidis in artificially contaminated eggs: the effects of inoculum size and suspending media. International Journal of Food Microbiology, 70 (1-2). pp. 131-141. ISSN 0168-1605 doi: https://doi.org/10.1016/s0168-1605(01)00540-2

Collighan, R. J. and Woodward, M. J. (2001) The SEF14 fimbrial antigen of Salmonella enterica serovar Enteritidis is encoded within a pathogenicity islet. Veterinary Microbiology, 80 (3). pp. 235-245. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(01)00309-1

Collins, M. D., Hoyles, L., Foster, G., Sjödén, B. and Falsen, E. (2001) Corynebacterium capitovis sp. nov., from a sheep. International Journal of Systematic and Evolutionary Microbiology, 51 (3). pp. 857-860. ISSN 1466-5034

Collins, M. D., Hoyles, L., Hutson, R. A., Foster, G. and Falsen, E. (2001) Corynebacterium testudinoris sp. nov., from a tortoise, and Corynebacterium felinum sp. nov., from a Scottish wild cat. International Journal of Systematic and Evolutionary Microbiology, 51 (4). pp. 1349-1352. ISSN 1466-5034

Collins, M. D., Hoyles, L., Tornqvist, E., von Essen, R. and Falsen, E. (2001) Characterization of some strains from human clinical sources which resemble “Leptotrichia sanguinegens”: description of Sneathia sanguinegens sp. nov., gen. nov. Systematic and Applied Microbiology, 24 (3). pp. 358-361. ISSN 0723-2020 doi: https://doi.org/10.1078/0723-2020-00047

Collins, M. D., Hutson, R. A., Hoyles, L., Falsen, E., Nikolaitchouk, N. and Foster, G. (2001) Streptococcus ovis sp. nov., isolated from sheep. International Journal of Systematic and Evolutionary Microbiology, 51 (3). pp. 1147-1150. ISSN 1466-5034

Couteau, D., McCartney, A. L., Gibson, G. R., Williamson, G. and Faulds, C. B. (2001) Isolation and characterization of human colonic bacteria able to hydrolyse chlorogenic acid. Journal of Applied Microbiology, 90 (6). pp. 873-881. ISSN 1365-2672 doi: https://doi.org/10.1046/j.1365-2672.2001.01316.x

Cutler, S. J. and Woodward, M. J. (2001) Lyme borreliosis in the UK: ecology and risks to domestic animals and man. Reviews in Medical Microbiology, 12 (4). pp. 199-209. ISSN 0954-139X

Dibb-Fuller, M. P., Best, A., Stagg, D. A., Cooley, W. A. and Woodward, M. J. (2001) An in-vitro model for studying the interaction of Escherichia coli O157:H7 and other enteropathogens with bovine primary cell cultures. Journal of Medical Microbiology, 50 (9). pp. 759-769. ISSN 0022-2615

Gibson, G. (2001) Nutritional modulation of the gut flora using prebiotics. In: Roy, D. (ed.) Probiotics and Health, The Intestinal Microflora. Bibliotheque Nationale du Quebec, pp. 36-42.

Gunning, R. E., Wales, A. D., Pearson, G. R., Done, E., Cookson, A. L. and Woodward, M. J. (2001) Attaching and effacing lesions in the intestines of two calves associated with natural infection with Escherichia coli O26:H11. Veterinary Record, 148 (25). pp. 780-782. ISSN 0042-4900 doi: https://doi.org/10.1136/vr.148.25.780

Hoyles, L., Falsen, E., Holmström, G., Persson, A., Sjödén, B. and Collins, M. D. (2001) Actinomyces suimastitidis sp. nov., isolated from pig mastitis. International Journal of Systematic and Evolutionary Microbiology, 51 (4). pp. 1323-1326. ISSN 1466-5034

Hoyles, L., Falsen, E., Pascual, C., Sjödén, B., Foster, G., Henderson, D. and Collins, M. D. (2001) Actinomyces catuli sp. nov., from dogs. International Journal of Systematic and Evolutionary Microbiology, 51 (2). pp. 679-682. ISSN 1466-5034

Hoyles, L., Foster, G., Falsen, E., Thomson, L. F. and Collins, M. D. (2001) Facklamia miroungae sp. nov., from a juvenile southern elephant seal (Mirounga leonina). International Journal of Systematic and Evolutionary Microbiology, 51 (4). pp. 1401-1403. ISSN 1466-5034

Hoyles, L., Pascual, C., Falsen, E., Foster, G., Grainger, J. M. and Collins, M. D. (2001) Actinomyces marimammalium sp. nov., from marine mammals. International Journal of Systematic and Evolutionary Microbiology, 51 (1). pp. 151-156. ISSN 1466-5034

Karatzas, A.K., Kets, E.P.W., Smid, E.J. and Bennik, M.H.J. (2001) The combined action of carvacrol and high hydrostatic pressure on Listeria monocytogenes Scott A. Journal of Applied Microbiology, 90 (3). pp. 463-469. ISSN 1365-2672 doi: https://doi.org/10.1046/j.1365-2672.2001.01266.x

Kirjavainen, P.V., Apostolou, E., Arvola, T., Salminen, S.J., Gibson, G. R. and Isolauri, E. (2001) Characterizing the composition of intestinal microflora as a prospective treatment target in infant allergic disease. FEMS Immunology and Medical Microbiology, 32 (1). pp. 1-7. ISSN 0928-8244 doi: https://doi.org/10.1016/S0928-8244(01)00272-3

La Ragione, R.M., Casula, G., Cutting, S.M. and Woodward, M.J. (2001) Bacillus subtilis spores competitively exclude Escherichia coli O78:K80 in poultry. Veterinary Microbiology, 79 (2). pp. 133-142. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(00)00350-3

La Ragione, R.M., Coles, K.E., Jorgensen, F., Humphrey, T.J. and Woodward, M.J. (2001) Virulence in the chick model and stress tolerance of Salmonella enterica serovar Orion var. 15+. International Journal of Medical Microbiology, 290 (8). pp. 707-718. ISSN 1438-4221 doi: https://doi.org/10.1016/S1438-4221(01)80011-4

Liebana, E., Garcia-Migura, L., Breslin, M.F., Davies, R.H. and Woodward, M.J. (2001) Diversity of strains of Salmonella enterica serotype Enteritidis from English poultry farms assessed by multiple genetic fingerprinting. Journal of Clinical Microbiology, 39 (1). pp. 154-161. ISSN 0095-1137 doi: https://doi.org/10.1128/jcm.39.1.154-161.2001

Liebana, E., Guns, D., Garcia-Migura, L., Woodward, M.J., Clifton-Hadley, F.A. and Davies, R.H. (2001) Molecular typing of Salmonella serotypes prevalent in animals in England: assessment of methodology. Journal of Clinical Microbiology, 39 (10). pp. 3609-3616. ISSN 0095-1137 doi: https://doi.org/10.1128/jcm.39.10.3609-3616.2001

Naughton, P. J., Grant, G., Bardocz, S., Allen-Vercoe, E., Woodward, M. J. and Pusztai, A. (2001) Expression of type 1 fimbriae (SEF 21) of Salmonella enterica serotype Enteritidis in the early colonisation of the rat intestine. Journal of Medical Microbiology, 50 (2). pp. 191-197. ISSN 0022-2615

Olano-Martin, E., Mountzouris, K.C., Gibson, G. R. and Rastall, R.A. (2001) Continuous production of pectic oligosaccharides in an enzyme membrane reactor. Food Engineering and Physical Production, 66 (7). pp. 966-971. ISSN 0022-1147 doi: https://doi.org/10.1111/j.1365-2621.2001.tb08220.x

Rabui, B. A., Jay, A.J., Gibson, G. R. and Rastall, R.A. (2001) Synthesis and fermentation profiles of novel galacto-oligosaccharides by-galactosidases from Bifidobacterium species. Applied and Environmental Microbiology, 67 (6). pp. 2526-2530. ISSN 0099-2240 doi: https://doi.org/10.1128/AEM.67.6.2526-2530.2001

Randall, L. P. and Woodward, M. J. (2001) Multiple antibiotic resistance (mar) locus in Salmonella enterica serovar typhimurium DT104. Applied and Environmental Microbiology, 67 (3). pp. 1190-1197. ISSN 1098-5336 doi: https://doi.org/10.1128/aem.67.3.1190-1197.2001

Randall, L. P. and Woodward, M. J. (2001) Role of the mar locus in virulence of Salmonella enterica serovar Typhimurium DT104 in chickens. Journal of Medical Microbiology, 50 (9). pp. 770-779. ISSN 0022-2615

Randall, L. P., Cooles, S. W., Sayers, A. R. and Woodward, M. J. (2001) Association between cyclohexane resistance in Salmonella of different serovars and increased, resistance to multiple antibiotics, disinfectants and dyes. Journal of Medical Microbiology, 50 (10). pp. 919-924. ISSN 0022-2615

Robertson, J.A., Ryden, P., Botham, R.L., Reading, S., Gibson, G. and Ring, S.G. (2001) Structural properties of diet-derived polysaccharides and their influence on butyrate production during fermentation. LWT-Food Science and Technology, 34 (8). pp. 567-573. ISSN 0023-6438 doi: https://doi.org/10.1006/fstl.2001.0816

Rycroft, C. E., Jones, M.R., Gibson, G. R. and Rastall, R.A. (2001) Fermentation properties of gentio-oligosaccharides. Letters in Applied Microbiology, 32 (3). pp. 156-161. ISSN 0266-8254 doi: https://doi.org/10.1046/j.1472-765x.2001.00875.x

Rycroft, C. E., Jones, M.R., Gibson, G. R. and Rastall, R.A. (2001) A comparative in vitro evaluation of the fermentation properties of prebiotic oligosaccharides. Journal of Applied Microbiology, 91 (5). pp. 878-887. ISSN 1364-5072 doi: https://doi.org/10.1046/j.1365-2672.2001.01446.x

Sojka, M., Sayers, A. R. and Woodward, M. J. (2001) Analysis of expression of flagella by Salmonella enterica serotype Typhimurium by monoclonal antibodies recognising both phase specific and common epitopes. Veterinary Microbiology, 78 (1). pp. 61-77. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(00)00291-1

Steer, T., Collins, M.D., Gibson, G. R., Hippe, H. and Lawson, P.A. (2001) Clostridium hathewayi sp. nov., from human faeces. Systematic and Applied Microbiology, 24 (3). pp. 353-357. ISSN 0723-2020 doi: https://doi.org/10.1078/0723-2020-00044

Tuohy, K. M., Finlay, R. K., Wynne, A. G. and Gibson, G. R. (2001) A human volunteer study on the prebiotic effects of HP-Inulin – gut bacteria enumerated using fluorescent in situ hybridisation (FISH). Anaerobe, 7 (3). pp. 113-118. ISSN 1075-9964 doi: https://doi.org/10.1006/anae.2001.0368

Tuohy, K.M., Kolida, S., Lustenberger, A. M. and Gibson, G. R. (2001) The prebiotic effects of biscuits containing partially hydrolyzed guar gum and fructooligosaccharides – A human volunteer study. British Journal of Nutrition, 86 (3). pp. 341-348. ISSN 0007-1145 doi: https://doi.org/10.1079/BJN2001394

Wales, A. D., Clifton-Hadley, F. A., Cookson, A. L., Dibb-Fuller, M. P., La Ragione, R. M., Sprigings, K. A., Pearson, G. R. and Woodward, M. J. (2001) Experimental infection of six-month-old sheep with Escherichia coli O157:H7. Veterinary Record, 148 (20). pp. 630-631. ISSN 0042-4900 doi: https://doi.org/10.1136/vr.148.20.630

Wales, A. D., Pearson, G. R., Skuse, A. M., Roe, J. M., Hayes, C. M., Cookson, A. L. and Woodward, M. J. (2001) Attaching and effacing lesions caused by Escherichia coli O157:H7 in experimentally inoculated neonatal lambs. Journal of Medical Microbiology, 50 (9). pp. 752-758. ISSN 0022-2615

Walker, R. A., Lindsay, E., Woodward, M. J., Ward, L. R. and Threlfall, E. J. (2001) Variation in clonality and antibiotic-resistance genes among multiresistant Salmonella enterica serotype typhimurium phage-type U302 (MR U302) from humans, animals, and foods. Microbial Drug Resistance-Mechanisms Epidemiology and Disease, 7 (1). pp. 13-21. ISSN 1076-6294 doi: https://doi.org/10.1089/107662901750152701

Walker, R. A., Saunders, N., Lawson, A. J., Lindsay, E. A., Dassama, M., Ward, L. R., Woodward, M. J., Davies, R. H., Liebana, E. and Threlfall, E. J. (2001) Use of a LightCycler gyrA mutation assay for rapid identification of mutations conferring decreased susceptibility to ciprofloxacin in multiresistant Salmonella enterica serotype typhimurium DT104 isolates. Journal of Clinical Microbiology, 39 (4). pp. 1443-1448. ISSN 0095-1137 doi: https://doi.org/10.1128/jcm.39.4.1443-1448.2001

Whelan, K., Gibson, G., Judd, P.A. and Taylor, M.A. (2001) The role of probiotics and prebiotics in the management of diarrhoea associated with enteral tube feeding. Journal of Human Nutrition and Dietetics, 14 (6). pp. 423-433. ISSN 0952-3871 doi: https://doi.org/10.1046/j.1365-277X.2001.00322.x

Wynne, A.G., Ames, J.M. and Gibson, G. (2001) An in vitro assessment of the fate of Maillard reaction products in the human gastrointestinal tract. In: Ames, J.M. (ed.) Melanoidins in Food Health. Proceedings Cost Action 919. European Communities, Luxembourg, pp. 93-100.

2000

Ames, J.M., Gibson, G., Bailey, R.G. and Wynne, A. (2000) Chemistry and possible physiological function of selected components of a glucose-lysine model system. In: Ames, J.M. and Hofmann, T.F. (eds.) Chemistry and Physiology of Selected Food Colorants. American Chemical Society, Washington, pp. 152-167.

Attwood, R. and Gibson, G. (2000) Aspects of probiotic use in preventative medicine. Chemist and Druggist, August. pp. 18-20.

Chart, H., Smith, H. R., La Ragione, R. M. and Woodward, M. J. (2000) An investigation into the pathogenic properties of Escherichia coli strains BLR, BL21, DH5 alpha and EQ1. Journal of Applied Microbiology, 89 (6). pp. 1048-1058. ISSN 1364-5072 doi: https://doi.org/10.1046/j.1365-2672.2000.01211.x

Collighan, R. J., Naylor, R. D., Martin, P. K., Cooley, B. A., Buller, N. and Woodward, M. J. (2000) A spirochete isolated from a case of severe virulent ovine foot disease is closely related to a Treponeme isolated from human periodontitis and bovine digital dermatitis. Veterinary Microbiology, 74 (3). pp. 249-257. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(00)00190-5

Collighan, R. J., Walker, S. L. and Woodward, M. J. (2000) Sequence analysis and distribution in Salmonella enterica serovars of IS3-like elements. International Journal of Medical Microbiology, 290 (7). pp. 619-626. ISSN 1438-4221 doi: https://doi.org/10.1016/S1438-4221(00)80011-9

Collins, M. D., Hoyles, L., Kalfas, S., Sundquist, G., Monsen, T., Nikolaitchouk, N. and Falsen, E. (2000) Characterization of Actinomyces isolates from infected root canals of teeth: description of Actinomyces radicidentis sp. nov. Journal of Clinical Microbiology, 38 (9). pp. 3399-3403. ISSN 0095-1137

Dibb-Fuller, M. P. and Woodward, M. J. (2000) Contribution of fimbriae and flagella of Salmonella enteritidis to colonization and invasion of chicks. Avian Pathology, 29 (4). pp. 295-304. ISSN 0307-9457 doi: https://doi.org/10.1080/03079450050118412

Fooks, L., Gibson, G. and Rabiu, B. (2000) Current concepts in probiotics. Current Medical Literature, Clinical Nutrition (9). pp. 29-40.

Fuller, R. and Gibson, G. (2000) Aspects of in vitro and in vivo research approaches directed towards identifying probiotics and prebiotics for human use. Journal of Nutrition (130). 391S-395S. ISSN 1541-6100

Gibson, G. (2000) Probiotics and prebiotics: an introduction. In: Gibson, G. and Angus, F. (eds.) Leatherhead Ingredients Handbook: Prebiotics and Probiotics. Leatherhead Food Research Association, i-xii.

Gibson, G. and Angus, F., eds. (2000) Leatherhead ingredients handbook: prebiotics and probiotics. Leatherhead Food Research Association.

Hoyles, L., Falsen, E., Foster, G., Pascual, C., Greko, C. and Collins, M. D. (2000) Actinomyces canis sp. nov., isolated from dogs. International Journal of Systematic and Evolutionary Microbiology, 50 (4). pp. 1547-1551. ISSN 1466-5026

Hoyles, L., Foster, G., Falsen, E. and Collins, M. D. (2000) Characterization of a Gemella-like organism isolated from an abscess of a rabbit: description of Gemella cunicula sp. nov. International Journal of Systematic and Evolutionary Microbiology, 50 (6). pp. 2037-2041. ISSN 1466-5026

Hoyles, L., Lawson, P. A., Foster, G., Falsen, E., Ohlén, M., Grainger, J. M. and Collins, M. D. (2000) Vagococcus fessus sp. nov., isolated from a seal and a harbour porpoise. International Journal of Systematic and Evolutionary Microbiology, 50 (3). pp. 1151-1154. ISSN 1466-5026

Jauregi, P., Mitchell, G.R. and Varley, J. (2000) Colloidal gas aphrons (CGA): dispersion and structural features. AIChE Journal, 46 (1). pp. 24-36. ISSN 0001-1541 doi: https://doi.org/10.1002/aic.690460105

Karatzas, K.-A., Bennik, M. H. J., Smid, E. J. and Kets, E. P. W. (2000) Combined action of S-carvone and mild heat treatment on Listeria monocytogenes Scott A. Journal of Applied Microbiology, 89 (2). pp. 296-301. ISSN 1364-5072 doi: https://doi.org/10.1046/j.1365-2672.2000.01110.x

Kolida, S., Tuohy, K.M. and Gibson, G. (2000) The human gut flora in nutrition and approaches for its dietary modulation. BNF Nutrition Foundation Nutrition Bulletins, 25. pp. 223-231.

La Ragione, R. M., Cooley, W. A. and Woodward, M. J. (2000) The role of fimbriae and flagella in the adherence of avian strains of Escherichia coli O78:K80 to tissue culture cells and tracheal and gut explants. Journal of Medical Microbiology, 49 (4). pp. 327-338. ISSN 0022-2615

La Ragione, R. M., Sayers, A. R. and Woodward, M. J. (2000) The role of fimbriae and flagella in the colonization, invasion and persistence of Escherichia coli O78 : K80 in the day-old-chick model. Epidemiology and Infection, 124 (3). pp. 351-363. ISSN 1469-4409 doi: https://doi.org/10.1017/s0950268899004045

Morse, R., Gibson, G. and Collins, M.D. (2000) Secondary structure analysis of the dissimilatory sulphite reductase in Desulfovibrio desulfuricans. Letters in Applied Microbiology, 30 (5). pp. 375-378. ISSN 0266-8254 doi: https://doi.org/10.1046/j.1472-765x.2000.00659.x

Nikolaitchouk, N., Hoyles, L., Falsen, E., Grainger, J. M. and Collins, M. D. (2000) Characterization of Actinomyces isolates from samples from the human urogenital tract: description of Actinomyces urogenitalis sp. nov. International Journal of Systematic and Evolutionary Microbiology, 50 (4). pp. 1649-1654. ISSN 1466-5026

Olano-Martin, E., Mountzouris, K.C., Gibson, G. and Rastall, R.A. (2000) In vitro fermentability of dextran, oligodextran and maltodextran by human gut bacteria. British Journal of Nutrition (83). pp. 247-255.

Palframan, R., McCartney, A.L. and Gibson, G. (2000) Gut feeling about good health. Chemistry and Industry (22). pp. 739-741.

Parham, N.J. and Gibson, G. R. (2000) Microbes involved in dissimilatory nitrate reduction in the human large intestine. FEMS microbiology ecology, 31 (1). pp. 21-28. ISSN 1574-6941 doi: https://doi.org/10.1111/j.1574-6941.2000.tb00667.x

Rabiu, B.A., McCartney, A.L., Macfarlane, G.T. and Gibson, G. (2000) Catabolite inhibition: an intrinsic role for fructooligosaccharides. In: Buttriss, J. and Saltmarsh, M. (eds.) Functional Foods II: Claims and Evidence. Royal Society of Chemistry, Cambridge, pp. 91-96.

Rastall, R.A., Fuller, R., Gaskins, H.R. and Gibson, G. (2000) Colonic functional foods. In: Gibson, G. and Williams, C.M. (eds.) Functional Foods: Concept to Product. Woodhead Publishing Limited, Cambridge, pp. 72-95.

Robertson, J. M. C., Grant, G., Allen-Vercoe, E., Woodward, M. J., Pusztai, A. and Flint, H. J. (2000) Adhesion of Salmonella enterica var Enteritidis strains lacking fimbriae and flagella to rat ileal explants cultured at the air interface or submerged in tissue culture medium. Journal of Medical Microbiology, 49 (8). pp. 691-696. ISSN 0022-2615

Steer, T., Carpenter, H., Tuohy, K. and Gibson, G. (2000) Perspectives on the role of the human gut microbiota and its modulation by pro- and prebiotics. Nutrition Research Reviews (13). pp. 229-254.

Woodward, M. J., Sojka, M., Sprigings, K. A. and Humphrey, T. J. (2000) The role of SEF14 and SEF17 fimbriae in the adherence of Salmonella enterica serotype Enteritidis to inanimate surfaces. Journal of Medical Microbiology, 49 (5). pp. 481-487. ISSN 0022-2615

1999

Allen-Vercoe, E. and Woodward, M. J. (1999) Colonisation of the chicken caecum by afimbriate and aflagellate derivatives of Salmonella enterica serotype Enteritidis. Veterinary Microbiology, 69 (4). pp. 265-275. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(99)00114-5

Allen-Vercoe, E. and Woodward, M. J. (1999) The role of flagella, but not fimbriae, in the adherence of Salmonella enterica serotype Enteritidis to chick gut explant. Journal of Medical Microbiology, 48 (8). pp. 771-780. ISSN 0022-2615

Allen-Vercoe, E., Sayers, A. R. and Woodward, M. J. (1999) Virulence of Salmonella enterica serotype Enteritidis aflagellate and afimbriate mutants in a day-old chick model. Epidemiology and Infection, 122 (3). pp. 395-402. ISSN 0950-2688 doi: https://doi.org/10.1017/s0950268899002460

Ames, J.M., Wynne, A., Hofman, A., Plos, S. and Gibson, G. (1999) The effect of a model melanoidin mixture in faecal bacterial populations in vitro. British Journal of Nutrition (82). pp. 489-495.

Bell, S.A., Steer, T.E. and Gibson, G. (1999) Diet, bacteria and bowel cancer. Nutrition and Food Science (4). pp. 187-191.

Collins, M. D., Hoyles, L., Lawson, P. A., Falsen, E., Robson, R. L. and Foster, G. (1999) Phenotypic and phylogenetic characterization of a new Corynebacterium species from dogs: description of Corynebacterium auriscanis sp. nov. Journal of Clinical Microbiology, 37 (11). pp. 3443-3447. ISSN 0095-1137

Collins, M.D. and Gibson, G. (1999) Probiotics, prebiotics and synbiotics: Dietary approaches for the modulation of microbial ecology. American Journal of Clinical Nutrition (69). pp. 1052-1057.

Dibb-Fuller, M. P., Allen-Vercoe, E., Thorns, C. J. and Woodward, M. J. (1999) Fimbriae- and flagella-mediated association with and invasion of cultured epithelial cells by Salmonella enteritidis. Microbiology-Uk, 145. pp. 1023-1031. ISSN 1350-0872

Fooks, L.J., Fuller, R. and Gibson, G. (1999) Prebiotics, probiotics and human gut microbiology. International Dairy Journal (9). pp. 53-61.

Fuller, R. and Gibson, G. R. (1999) Probiotics and prebiotics. Definition and role. In: Sadler, M., Caballero, B. and Strain, S. (eds.) Encyclopedia of Human Nutrition. Academic Press, London, pp. 1633-1639.

Gibson, G. (1999) Dietary modulation of the human gut microflora using the prebiotics oligofructose and inulin. Journal of Nutrition (129). pp. 1438-1441.

Gibson, G. (1999) Evaluating the efficacy of pro- and prebiotics. In: Functional Foods and Practical and Scientific Considerations of Conducting Food Efficacy Trials to Support Health Claims. IBC library series. IBC Business Publishing, London, pp. 149-152. ISBN 9781852716080

Gibson, G. and Collins, M.D. (1999) Concept of balanced colonic microbiota, prebiotics and synbiotics. In: Hanson, L.A. and Yolken, R.H. (eds.) Probiotics, other Nutritional Factors and Intestinal Microflora. Nestle Nutrition Workshop Series, 42. Nestec Ltd. Vevey/Lippincott-Raven Publishers, Philadelphia, pp. 139-156.

Gibson, G. R., Wynne, A. and Bird, A. (1999) Microflora of the intestine: role and effects. In: Sadler, M., Caballero, B. and Strain, S. (eds.) Encyclopedia of Human Nutrition. Academic Press, London, pp. 1282-1289.

Gibson, G. R. and Roberfroid, M. B., eds. (1999) Colonic microbiota, nutrition and health. Kluwer Academic Publishers, Dodrecht. ISBN 9780412798801

Gibson, G. R., Rastall, R.A. and Roberfroid, M.B. (1999) Prebiotics. In: Gibson, G. and Roberfroid, M.B. (eds.) Colonic Microbiota, Nutrition and Health. Kluwer Academic Publishers, pp. 101-124. ISBN 9789401710794

Hamilton-Miller, J. and Gibson, G. (1999) Efficacy studies of probiotics: a call for guidelines. British Journal of Nutrition (82). pp. 73-75.

Harmsen, H.J.M., Gibson, G., Elfferich, P., Raangs, G.C., Wideboer-Veloo, A.C.M., Argaiz, A., Roberfroid, M.B. and Welling, G.W. (1999) Comparison of viable cell counts and fluorescent in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria. FEMS Microbiology Ecology (183). pp. 125-129.

Kirjavainen, P. and Gibson, G. (1999) Healthy gut microflora and allergy: factors influencing the development of the microflora. Annals of Medicine (31). pp. 288-292.

La Ragione, R. M., Collighan, R. J. and Woodward, M. J. (1999) Non-curliation of Escherichia coli O78 : K80 isolates associated with IS1 insertion in csgB and reduced persistence in poultry infection. Fems Microbiology Letters, 175 (2). pp. 247-253. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.1999.tb13627.x

Pearson, G. R., Bazeley, K. J., Jones, J. R., Gunning, R. F., Green, M. J., Cookson, A. and Woodward, M. J. (1999) Attaching and effacing lesions in the large intestine of an eight-month-old heifer associated with Escherichia coli O26 infection in a group of animals with dysentery. Veterinary Record, 145 (13). pp. 370-373. ISSN 0042-4900

Petrovska, L., Hewinson, R. G., Dougan, G., Maskell, D. J. and Woodward, M. J. (1999) Brucella melitensis 16M: characterisation of the galE gene and mouse immunisation studies with a galE deficient mutant. Veterinary Microbiology, 65 (1). pp. 21-36. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(98)00281-8

Rycroft, C.E., Fooks, L.J. and Gibson, G. (1999) Methods for assessing the potential of prebiotics and probiotics. Current Opinion in Clinical Nutrition and Metabolic Care, 2 (6). pp. 481-484. ISSN 1363-1950 doi: https://doi.org/10.1097/00075197-199911000-00008

Suau, A., Bonnet, R., Sutren, M., Godon, J.J., Gibson, G., Collins, M.D. and Dore, J. (1999) Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Applied and Environment Microbiology (65). pp. 4799-4807.

Walker, S. L., Sojka, M., Dibb-Fuller, M. and Woodward, M. J. (1999) Effect of pH, temperature and surface contact on the elaboration of fimbriae and flagella by Salmonella serotype Enteritidis. Journal of Medical Microbiology, 48 (3). pp. 253-261. ISSN 0022-2615

Willis, C.L. and Gibson, G. (1999) The natural microflora of humans. In: Robinson, R., Batt, C. and Patel, P. (eds.) Encyclopedia of Food Microbiology. Academic Press, London.

Willis, C.L., Gibson, G., Holt, J., Atherton, S. and Allison, C. (1999) Negative correlation between oral malodour and numbers and activities of sulphate-reducing bacteria in the human mouth. Archives of Oral Biology (44). pp. 665-670.

Woodward, M. J., Gavier-Widen, D., McLaren, I. M., Wray, C., Sozmen, M. and Pearson, G. R. (1999) Infection of gnotobiotic calves with Escherichia coli O157 : H7 strain A84. Veterinary Record, 144 (17). pp. 466-470. ISSN 0042-4900

1998

Allen-Vercoe, E., Collighan, R. and Woodward, M. J. (1998) The variant rpoS allele of S-enteritidis strain 27655R does not affect virulence in a chick model nor constitutive curliation but does generate a cold-sensitive phenotype. Fems Microbiology Letters, 167 (2). pp. 245-253. ISSN 0378-1097 doi: https://doi.org/10.1016/s0378-1097(98)00396-6

Demirkan, I., Carter, S. D., Murray, R. D., Blowey, R. W. and Woodward, M. J. (1998) The frequent detection of a treponeme in bovine digital dermatitis by immunocytochemistry and polymerase chain reaction. Veterinary Microbiology, 60 (2-4). pp. 285-292. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(98)00146-1

Fuller, R. and Gibson, G. (1998) Probiotics and prebiotics: microflora management for improved gut health. Clinical Microbiology and Infection (4). pp. 477-480.

Gibson, G. (1998) Prebiotics as microflora management tools. Gastroenterology International (11). pp. 20-21.

Gibson, G. and Fuller, R. (1998) Effect of oligofructoses on intestinal microenvironment and faecal flora. In: Rutgeers, P. and Ghoos, Y. (eds.) Proceedings of Symposium on Nutrition and the Gastrointestinal Microenvironment. Nutricia, Belgium, pp. 25-41.

Gibson, G. and Fuller, R. (1998) Probiotics and prebiotics: Microbes on the menu. CHO, The Sugar Bureau 9 (3). pp. 1-3.

Gibson, G. and Fuller, R. (1998) The role of probiotics and prebiotics in the functional food concept. In: Sadler, M.J. and Saltmarsh, M. (eds.) Functional Foods, The Consumer, the Products and the Evidence. The Royal Society of Chemistry, Cambridge, pp. 3-14.

Gibson, G. and McCartney, A.L. (1998) Modification of gut flora by dietary means. Biochemical Society Transactions (26). pp. 222-228.

Gibson, G. R. (1998) Dietary modulation of the human gut microflora using prebiotics. British Journal of Nutrition, 80 (4). S209-S212. ISSN 0007-1145

Macfarlane, G.T., Macfarlane, S. and Gibson, G. (1998) Validation of a three-stage compound continuous culture system for investigating the effect of retention time on the ecology and metabolism of bacteria in the human colonic microbiota. Microbial Ecology (35). pp. 180-187.

McCartney, A.L. and Gibson, G. (1998) The application of prebiotics in human health and nutrition. In: Proceeding Lactic 97. Which Strains? For Which Products? Adria Normandie, pp. 59-73.

Nash, A. and Gibson, G. (1998) Probiotics and prebiotics: potential for health promotion. Food Technology International. pp. 17-19.

Roberfroid, M.B., Van Loo, J. and Gibson, G. (1998) The bifidogenic nature of chicory inulin and its hydrolysis products. Journal of Nutrition (128). pp. 11-18.

Salminen, S., Bouley, C., Boutron-Ruault, M.-C., Cummings, J.H., Franck, A., Gibson, G., Isolauri, E., Moreau, M.C., Roberfroid, M.B. and Rowland, I.R. (1998) Functional food science and gastrointestinal physiology and function. British Journal of Nutrition (80). S147-S171. ISSN 0007-1145

Ziemer, C.J. and Gibson, G. R. (1998) An overview of probiotics, prebiotics and synbiotics in the functional food concept: perspectives and future strategies. International Dairy Journal, 8 (5-6). pp. 473-479. ISSN 0958-6946 doi: https://doi.org/10.1016/S0958-6946(98)00071-5

1997

Allen-Vercoe, E., Dibb-Fuller, M., Thorns, C. J. and Woodward, M. J. (1997) SEF17 fimbriae are essential for the convoluted colonial morphology of Salmonella enteritidis. Fems Microbiology Letters, 153 (1). pp. 33-42. ISSN 0378-1097 doi: https://doi.org/10.1016/s0378-1097(97)00219-x

Collighan, R. J. and Woodward, M. J. (1997) Sequence analysis and distribution of an IS3-like insertion element isolated from Salmonella enteritidis. Fems Microbiology Letters, 154 (2). pp. 207-213. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.1997.tb12645.x

Collighan, R. J. and Woodward, M. J. (1997) Spirochaetes and other bacterial species associated with bovine digital dermatitis. Fems Microbiology Letters, 156 (1). pp. 37-41. ISSN 0378-1097 doi: https://doi.org/10.1111/j.1574-6968.1997.tb12702.x

Dibb-Fuller, M., Allen-Vercoe, E., Woodward, M. J. and Thorns, C. J. (1997) Expression of SEF17 fimbriae by Salmonella enteritidis. Letters in Applied Microbiology, 25 (6). pp. 447-452. ISSN 0266-8254 doi: https://doi.org/10.1111/j.1472-765X.1997.tb00015.x

Fuller, R. and Gibson, G. (1997) Modification of the intestinal microflora using probiotics and prebiotics. Scandinavian Journal of Gastroenterology (32). pp. 28-31.

Gibson, G., Saavedra, J.M., Macfarlane, S. and Macfarlane, G.T. (1997) Gastrointestinal microbial disease. In: Fuller, R. (ed.) Probiotics 2: Application and Practical Aspects. Chapman and Hall, Andover, pp. 10-39.

Hewinson, R. G., Griffiths, P. C., Bevan, B. J., Kirwan, S. E. S., Field, M. E., Woodward, M. J. and Dawson, M. (1997) Detection of Chlamydia psittaci DNA in avian clinical samples by polymerase chain reaction. Veterinary Microbiology, 54 (2). pp. 155-166. ISSN 0378-1135 doi: https://doi.org/10.1016/s0378-1135(96)01268-0

Mackey, B.M. and Gibson, G. (1997) Escherichia coli 0157 - from farm to fork and beyond. Society for General Microbiology Quarterly. pp. 55-57.

Rijpkema, S. G. T., David, G. P., Hughes, S. L. and Woodward, M. J. (1997) Partial identification of spirochaetes from two dairy cows with digital dermatitis by polymerase chain reaction analysis of the 16S ribosomal RNA gene. Veterinary Record, 140 (10). pp. 257-259. ISSN 0042-4900

Willis, C.L., Cummings, J.H., Neale, G. and Gibson, G. (1997) Nutritional aspects of dissimilatory sulphate reduction in the human large intestine. Current Microbiology (35). pp. 294-298.

Woodward, M. J., Swallow, C., Kitching, A., Dalley, C. and Sayers, A. R. (1997) Leptospira hardjo serodiagnosis: a comparison of MAT, ELISA and immunocomb. Veterinary Record, 141 (23). pp. 603-604. ISSN 0042-4900

Woolford, A. J., Hewinson, R. G., Woodward, M. and Dale, J. W. (1997) Sequence heterogeneity of an mpb70 gene analogue in Mycobacterium kansasii. Fems Microbiology Letters, 148 (1). pp. 43-48. ISSN 0378-1097 doi: https://doi.org/10.1016/s0378-1097(97)00010-4

1996

Ayling, R. D., Woodward, M. J., Evans, S. and Newell, D. G. (1996) Restriction fragment length polymorphism of polymerase chain reaction products applied to the differentiation of poultry campylobacters for epidemiological investigations. Research in Veterinary Science, 60 (2). pp. 168-172. ISSN 0034-5288 doi: https://doi.org/10.1016/s0034-5288(96)90013-2

Bernalier, A., Lelait, M., Rochet, V., Grivet, J.P., Gibson, G. and Durand, M. (1996) Acetogenesis from H2 and CO2 by methane and non-methane producing human colonic bacteria. FEMS Microbiology Ecology (19). pp. 193-202.

Cummings, J.H., Milojevic, S., Newton, J.M., Harding, M., Coward, W.A., Gibson, G., Botham, R.L., Ring, S.G., Wraight, A.P., Stockham, M.A. and Allwood, M.A. (1996) In vivo studies of amylose coated microspheres for drug delivery to the colon. Journal of Controlled Release (40). pp. 123-131.

Edwards, C.A., Gibson, G., Macfarlane, G.T., Champ, M., Jensen, B.B., Mathers, J., Nagengast, F., Rumney, C. and Quehl, A. (1996) In vitro method for quantification of the fermentation of starch by human faecal bacteria. Journal of Science and Food Agriculture (71). pp. 209-217.

Gibson, G. (1996) Oligosaccharides and prebiotics. In: Petfood Forum 96. Watt Publishing Co., Illinois, USA, pp. 42-49.

Gibson, G. (1996) Prebiotics and probiotics: their functional use. In: Shaw, S. (ed.) Functional food, nutraceutical or pharmaceutical? IBC Technical Services, London, pp. 85-97.

Gibson, G. (1996) The concept of prebiotics as applied to fructooligosaccharides and inulin. In: Fuchs, A. (ed.) Proceedings 5th Research Meeting on Inulin. Carbohydrate Research Foundation, Akzo Nobel, The Netherlands, pp. 81-91.

Gibson, G. (1996) An overview of the composition and activities of the human colonic microflora. In: Malkki, Y. and Cummings, J.H. (eds.) Cost Action 92; Dietary fibre and fermentation in the colon. Office for Official Publications of the European Communities, Luxembourg, pp. 11-23.

Gibson, G. and Beaumont, A. (1996) An overview of human colonic bacteriology in health and disease. In: Leeds, A.R. and Rowland, I.R. (eds.) Gut flora and health - past, present and future. Royal Society of Medicine Press, London, pp. 3-11.

Gibson, G., Willems, A., Reading, S. and Collins, M.D. (1996) Fermentation of non-digestible oligosaccharides by human colonic bacteria. Proceedings of the Nutrition Society, 55. pp. 899-912. ISSN 0029-6651

Macfarlane, G.T. and Gibson, G. (1996) Carbohydrate fermentation, energy transduction and gas metabolism in the human large intestine. In: Mackie, R.I. and White, B.A. (eds.) Ecology and Physiology of Gastrointestinal Microbes. Volume 1. Chapman and Hall, London, pp. 269-318.

Milojevic, S., Newton, J.M., Cummings, J.H., Gibson, G., Botham, R.L., Ring, S., Stockham, M. and Allwood, M.C. (1996) Amylose as a coating for drug delivery to the colon: Preparation and in vitro evaluation using 5-aminosalicylic acid pellets. Journal of Controlled Release (38). pp. 75-84.

Milojevic, S., Newton, J.M., Cummings, J.H., Gibson, G., Botham, R.L., Ring, S., Stockham, M. and Allwood, M.C. (1996) Amylose as a coating for drug delivery to the colon: Preparation and in vitro evaluation using glucose pellets. Journal of Controlled Release (38). pp. 85-94.

Redstone, J. S. and Woodward, M. J. (1996) The development of a ligase mediated PCR with potential for the differentiation of serovars within Leptospira interrogans. Veterinary Microbiology, 51 (3-4). pp. 351-362. ISSN 0378-1135 doi: https://doi.org/10.1016/0378-1135(96)00053-3

Thorns, C. J., Turcotte, C., Gemmell, C. G. and Woodward, M. J. (1996) Studies into the role of the SEF14 fimbrial antigen in the pathogenesis of Salmonella enteritidis. Microbial Pathogenesis, 20 (4). pp. 235-246. ISSN 0882-4010 doi: https://doi.org/10.1006/mpat.1996.0022

Willis, C.L., Cummings, J.H., Neale, G. and Gibson, G. (1996) In vitro effects of mucin fermentation on the growth of human colonic sulphate-reducing bacteria. Anaerobe (2). pp. 117-122.

Woodward, M. J. and Kirwan, S. E. S. (1996) Detection of Salmonella enteritidis in eggs by the polymerase chain reaction. Veterinary Record, 138 (17). pp. 411-413. ISSN 0042-4900

Woodward, M. J., AllenVercoe, E. and Redstone, J. S. (1996) Distribution, gene sequence and expression in vivo of the plasmid encoded fimbrial antigen of Salmonella serotype Enteritidis. Epidemiology and Infection, 117 (1). pp. 17-28. ISSN 0950-2688

1995

Gibson, G. (1995) In vitro and in vivo effects of oligofructose and inulin on the colonic microbiota. In: 1st Orafti Research Conference, pp. 30-64.

Gibson, G. and Macfarlane, G.T. (1995) Mechanisms and clinical consequences of H2 disposal in the human colon. In: Duerden, B.I., Wade, W.G., Brazier, J.S., Eley, A., Wren, B. and Hudson, M.J. (eds.) Medical and Dental Aspects of Anaerobes. Science Reviews, Middlesex, pp. 121-135. ISBN 9780905927596

Gibson, G. and Roberfroid, M.B. (1995) Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics. Journal of Nutrition (125). pp. 1401-1412.

Gibson, G., Beatty, E.R., Wang, X. and Cummings, J.H. (1995) Selective stimulation of bifidobacteria in the human colon by oligofructose and inulin. Gastroenterology (108). pp. 975-982.

Gibson, G., Macfarlane, S. and Macfarlane, G.T. (1995) Methodology for the isolation of Helicobacter pylori from human feces. Journal of Microbiological Methods (23). pp. 321-328.

Gibson, G. R. and Macfarlane, G. T., eds. (1995) Human colonic bacteria: role in nutrition, physiology and pathology. CRC Press. ISBN 9780849345241

Levitt, M.D., Gibson, G. and Christl, S.U. (1995) Gas metabolism in the large intestine. In: Gibson, G. and Macfarlane, G.T. (eds.) Human colonic bacteria: role in nutrition, physiology and pathology. CRC Press, Boca Raton, pp. 131-154. ISBN 9780849345241

Macfarlane, G. T. and Gibson, G. (1995) Microbiological aspects of short chain fatty acid production in the large bowel. In: Cummings, J. H., Rombeau, J. L. and Sakata, T. (eds.) Physiological and Clinical Aspects of Short Chain Fatty Acid Metabolism. Cambridge University Press, Cambridge, pp. 87-105. ISBN 9780521440486

Macfarlane, G.T. and Gibson, G. (1995) Bacterial infections of the colon. In: Gibson, G. and Macfarlane, G.T. (eds.) Human colonic bacteria: role in nutrition, physiology and pathology. CRC Press, Boca Raton, pp. 201-226. ISBN 9780849345241

Macfarlane, G.T., Gibson, G., Drasar, B. and Cummings, J.H. (1995) Metabolic significance of the colonic microflora. In: Whitehead, R. (ed.) Gastrointestinal and Oesophageal Physiology. Livingstone Churchill, Edinburgh, pp. 195-238.

Macfarlane, G.T., Macfarlane, S. and Gibson, G. (1995) Co-culture of Bifidobacterium adolescentis and Bacteroides thetaiotaomicron in arabinogalactan-limited chemostats: effects of dilution rate and pH. Anaerobe (1). pp. 275-281.

Milojevic, S., Newton, J.M., Cummings, J.H., Gibson, G., Botham, R.L., Ring, S., Allwood, M.C. and Stockham, M. (1995) Amylose, the new perspective in oral drug delivery to the human large intestine. STP Pharma Sciences (5). pp. 47-53.

Willis, C.L., Gibson, G., Allison, C., Macfarlane, S. and Holt, J. (1995) Growth, incidence and activities of dissimilatory sulphate-reducing bacteria in the human oral cavity. FEMS Microbiology Letters (129). pp. 267-272.

1994

Gibson, G. and Wang, X. (1994) Bifidogenic properties of different types of fructo-oligosaccharides. Food Microbiology (11). pp. 491-498.

Gibson, G. and Wang, X. (1994) Regulatory effects of bifidobacteria on the growth of other colonic bacteria. Journal of Applied Bacteriology (77). pp. 412-420.

Gibson, G. and Wang, X. (1994) Selective enrichment of bifidobacteria from human gut contents by oligofructose using continuous culture. FEMS Microbiology Letters (118). pp. 121-128.

Gibson, G. (1994) Gas metabolism by human colonic bacteria and consequences for the host. Journal of Applied Bacteriology. pp. 25-29. ISSN 1365-2672 (special issue:The W.H. Pierce Memorial Symposium)

Gibson, G., Willis, C.L. and Van Loo, J. (1994) Non digestible oligosaccharides and bifidobacteria: implications for health. International Sugar Journal (96). pp. 381-387. ISSN 0020-8841

Gibson, G. R. and Macfarlane, G.T. (1994) Intestinal bacteria and disease. In: Gibson., S.A.W. (ed.) Human Health - The Contribution of Microorganisms. Springer-Verlag, London, pp. 53-62.

Kelly, S.M., Pitcher, M.C.L., Farmery, S.M. and Gibson, G. (1994) Isolation of Helicobacter pylori from feces of patients with dyspepsia in the United Kingdom. Gastroenterology (107). pp. 1671-1674.

Macfarlane, G.T. and Gibson, G. R. (1994) Metabolic activities of the normal colonic flora. In: Gibson, S.A.W. (ed.) Human Health - The Contribution of Microorganisms. Springer-Verlag, London, pp. 17-52.

Macfarlane, G.T., Gibson, G. and Macfarlane, S. (1994) Short chain fatty acid and lactate production by human intestinal bacteria grown in batch and continuous culture. In: Cummings, J.H., Binder, H.J. and Soergel, K. (eds.) Short Chain Fatty Acids. Kluwer Publishing, London, pp. 44-60. ISBN 9780792388494

1993

Christl, S.U., Gibson, G. and Cummings, J.H. (1993) Methanogenesis in the human large intestine. Gut (34). pp. 573-574.

Christl, S.U., Gibson, G., Murgatroyd, P.R., Sheppach, W. and Cummings, J.H. (1993) Impaired hydrogen metabolism in pneumatosis coli. Gastroenterology (104). pp. 392-397.

Gibson, G., Macfarlane, G.T. and Cummings, J.H. (1993) Leading article: Sulphate-reducing bacteria and hydrogen metabolism in the human large intestine. Gut (34). pp. 437-439.

Gibson, G., Macfarlane, S. and Macfarlane, G.T. (1993) Degradative activities of gut anaerobes studied in a 3-stage continuous culture model of the colon. Clinical Infectious Diseases (16). S420-S421.

Gibson, G., Macfarlane, S. and Macfarlane, G.T. (1993) Metabolic interactions involving sulphate-reducing and methanogenic bacteria in the human large intestine. FEMS Microbiology Ecology (12). pp. 117-125.

Macfarlane, G.T. and Gibson, G. (1993) Characteristics of protease synthesis in Bacteroides splanchnicus NCTC 10825. Applied Microbiology and Biotechnology (39). pp. 506-511.

Macfarlane, G.T., Macfarlane, S. and Gibson, G. (1993) Physiology and biochemistry of glycyl-prolyl aminopeptidase formation in Bacteroides splanchnicus. Clinical Infectious Diseases (16). S408.

Milojevic, S., Newton, J.M., Cummings, J.H., Gibson, G., Botham, L., Ring, S., Allwood, M. and Stockham, M. (1993) In vitro and in vivo evaluation of amylose coated pellets for colon specific drug delivery. Proceedings International Symposium on Controlled Release of Bioactive Material. pp. 288-289.

Parkes, R.J., Dowling, N.J.E., White, D.C., Herbert, R.A. and Gibson, G. (1993) Characterization of sulphate-reducing bacterial populations within marine and estuarine sediments with different rates of sulphate reduction. FEMS Microbiology Ecology (102). pp. 235-250.

Roberfroid, M., Gibson, G. R. and Delzenne, N. (1993) Biochemistry of oligofructose, a nondigestible fiber - an approach to calculate its caloric value. Nutrition Reviews, 51 (5). pp. 137-146. ISSN 0029-6643

Wang, X. and Gibson, G. (1993) Effects of the in vitro fermentation of oligofructose and inulin by bacteria growing in the human large intestine. Journal of Applied Bacteriology (75). pp. 373-380.

1992

Christl, S.U., Gibson, G. and Cummings, J.H. (1992) Role of dietary sulphate in the regulation of methanogenesis in the human large intestine. Gut (33). pp. 1234-1238.

Christl, S.U., Murgatroyd, P.R., Gibson, G. and Cummings, J.H. (1992) Production, excretion and metabolism of hydrogen in the large intestine. Gastroenterology (102). pp. 1269-1277.

Macfarlane, G.T., Gibson, G. and Cummings, J.H. (1992) Comparison of fermentation reactions in different regions of the human colon. Journal of Applied Bacteriology (72). pp. 56-62.

Macfarlane, G.T., Gibson, G., Beatty, E. and Cummings, J.H. (1992) Estimation of short chain fatty acid production from protein by human intestinal bacteria¬ based on branched chain fatty acid production. FEMS Microbiology Ecology (101). pp. 81-88.

Macfarlane, G.T., Gibson, S.A.W. and Gibson, G. (1992) Proteolytic activities of the fragilis group of Bacteroides spp. In: Duerden, B.I., Brazier, J.S., Seddon, S.V. and Wade, W.G. (eds.) Medical and Environmental Aspects of Anaerobes. Wrightson Biomedical Publications Ltd., Petersfield, pp. 130-143.

Macfarlane, G.T., Macfarlane, S. and Gibson, G. (1992) Synthesis and release of proteases by Bacteroides fragilis. Current Microbiology (24). pp. 55-59. ISSN 0343-8651

Thomas, J.E., Gibson, G., Dabou, M.K., Dale, A. and Weaver, L. (1992) Isolation of Helicobacter pylori from human faeces. Lancet (340). pp. 1194-1195.

Tsai, H.H., Sunderland, D., Gibson, G., Hart, C.A. and Rhodes, J.M. (1992) A novel mucin sulphatase from human faeces: its identification, purification and characterization. Clinical Science (82). pp. 447-454.

1991

Florin, T.H.J., Neale, G., Gibson, G., Christl, S.U. and Cummings, J.H. (1991) Metabolism of dietary sulphate: absorption and excretion in humans. Gut (32). pp. 766-773.

Gibson, G., Cummings, J.H. and Macfarlane, G.T. (1991) Growth and activities of sulphate-reducing bacteria in gut contents from healthy subjects and patients with ulcerative colitis. FEMS Microbiology Ecology (86). pp. 103-112.

Gibson, G., Macfarlane, S. and Cummings, J.H. (1991) Comparison of the fermentability of polysaccharides by mixed human faecal bacteria in relation to their suitability as bulk forming laxatives. Letters in Applied Microbiology (11). pp. 251-254.

Macfarlane, G.T. and Gibson, G. (1991) Co-utilization of polymerized carbon sources by Bacteroides ovatus grown in a 2-stage continuous culture system. Applied and Environmental Microbiology (57). pp. 1-6.

Macfarlane, G.T. and Gibson, G. (1991) Sulphate-reducing bacteria. In: Levett, P.N. (ed.) Anaerobic Microbiology - A Practical Approach. Oxford University Press, Oxford, pp. 201-221.

Macfarlane, G.T. and Gibson, G. R. (1991) Formation of glycoprotein degrading enzymes by Bacteroides fragilis. FEMS Microbiology Letters (77). pp. 289-294.

Macfarlane, G.T., Gibson, G. R. and Cummings, J.H. (1991) Extracellular and cell-associated glycosidase activities in different regions of the human large intestine. Letters in Applied Microbiology (12). pp. 3-7.

1990

Gibson, G., Cummings, J.H. and Macfarlane, G.T. (1990) Factors affecting hydrogen uptake by bacteria growing in the human large intestine. In: Belaich, J.P., Bruschi, M. and Garcia, J.L. (eds.) The Microbiology and Biochemistry of Strict Anaerobes Involved in Interspecific Hydrogen Transfer. Federation of European Microbiological Societies Symposium Series, 54. Springer, New York, pp. 191-202. ISBN 9781461306139 doi: https://doi.org/10.1007/978-1-4613-0613-9_17

Gibson, G., Cummings, J.H., Macfarlane, G.T., Allison, C., Segal, I., Vorster, H.H. and Walker, A.R.P. (1990) Alternative pathways for hydrogen disposal during fermentation in the human colon. Gut (31). pp. 679-683.

Gibson, G. (1990) A review - The physiology and ecology of sulphate-reducing bacteria. Journal of Applied Bacteriology, 69 (6). pp. 769-797. doi: https://doi.org/10.1111/j.1365-2672.1990.tb01575.x

Macfarlane, G.T., Hay, S., Macfarlane, S. and Gibson, G. (1990) Effect of different carbohydrates on growth, polysaccharidase and glycosidase production by Bacteroides ovatus, in batch and continuous culture. Journal of Applied Bacteriology (68). pp. 179-187.

1989

Cummings, J.H., Gibson, G. and Macfarlane, G.T. (1989) Quantitative estimates of fermentation in the hind gut of man. Acta Veterinaria Scandanavica (86). pp. 76-82.

Gibson, G., Parkes, R.J. and Herbert, R.A. (1989) Biological availability and turnover rate of acetate in marine and estuarine sediments and the relationship to dissimilatory sulphate reduction. FEMS Microbiology Ecology (62). pp. 303-306.

Macfarlane, G.T., Cummings, J.H., Macfarlane, S. and Gibson, G. (1989) Influence of retention time on degradation of pancreatic enzymes by human colonic bacteria grown in a 3-stage continuous culture system. Journal of Applied Bacteriology (67). pp. 521-527.

Macfarlane, G.T., Hay, S. and Gibson, G. (1989) Influence of mucin on glycosidase, protease and arylamidase activities of human gut bacteria grown in a 3-stage continuous culture system. Journal of Applied Bacteriology (66). pp. 407-417.

Parkes, R.J., Gibson, G., Mueller-Harvey, I., Buckingham, W.J. and Herbert, R.A. (1989) Determination of the substrates for sulphate-reducing bacteria within marine and estuarine sediments with different rates of sulphate reduction. Journal of General Microbiology (135). 175 -187.

1988

Gibson, G. and Macfarlane, G.T. (1988) Chemostat enrichment of sulphate-reducing bacteria from the large gut. Letters in Applied Microbiology (7). pp. 127-133.

Gibson, G., Cummings, J.H. and Macfarlane, G.T. (1988) Competition for hydrogen between sulphate-reducing and methanogenic bacteria from the human large intestine. Journal of Applied Bacteriology (65). pp. 241-247.

Gibson, G., Cummings, J.H. and Macfarlane, G.T. (1988) Use of a 3-stage continuous culture system to study the effect of mucin on dissimilatory sulfate reduction and methanogenesis by mixed populations of human gut bacteria. Applied and Environmental Microbiology (54). pp. 2750-2755.

Gibson, G., Macfarlane, G.T. and Cummings, J.H. (1988) Occurrence of sulphate-reducing bacteria in human faeces and the relationship of dissimilatory sulphate reduction to methanogenesis in the large gut. Journal of Applied Bacteriology (65). pp. 103-110.

Gibson, S.A.W. and Gibson, G. (1988) A rapid method for determination of sulphate-reducing bacteria in human faeces. Letters in Applied Microbiology (7). pp. 33-35.

Macfarlane, G.T., Allison, C. and Gibson, G. (1988) Effect of pH on large gut proteolysis. Letters in Applied Microbiology (7). pp. 161-164.

1987

Gibson, G., Parkes, R. and Herbert, R. (1987) Evaluation of viable counting procedures for the enumeration of sulphate-reducing bacteria in estuarine sediments. Journal of Microbiological Methods, 7. pp. 101-110. ISSN 0167-7012

This list was generated on Tue Mar 19 04:28:09 2024 UTC.

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